Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C028750.2 Cucumis melo HOM05D003854 ORTHO05D004415 2.1e-85 318.9 153 100.0
MELO3C002788.2 Cucumis melo HOM05D003854 ORTHO05D004415 9.1e-65 250.4 133 91.0
CsaV3_7G000470 Cucumis sativus L. HOM05D003854 ORTHO05D004415 5.9e-64 247.7 133 91.0
ClCG02G004480 Citrullus lanatus HOM05D003854 ORTHO05D004415 2.6e-59 232.3 133 85.0
Sed0011434 Sechium edule HOM05D003854 ORTHO05D004415 9.4e-54 213.8 133 77.4
Haze_02230 Corylus avellana HOM05D003854 ORTHO05D004415 2.4e-41 172.6 131 63.4
Eucgr.H01470 Eucalyptus grandis HOM05D003854 ORTHO05D004415 2.4e-41 172.6 147 58.5
CANSAT11G1548 Cannabis sativa HOM05D003854 ORTHO05D004415 9.2e-41 170.6 133 60.9
MD05G1054700 Malus domestica HOM05D003854 ORTHO05D004415 9.2e-41 170.6 131 63.4
CiPaw.06G127600 Carya illinoinensis HOM05D003854 ORTHO05D004415 1.6e-40 169.9 131 63.4
QL11p046566 Quercus lobata HOM05D003854 ORTHO05D004415 3.5e-40 168.7 132 61.4
Nn5g29249 Nelumbo nucifera HOM05D003854 ORTHO05D004415 1.7e-39 166.4 131 61.8
Eucgr.G01738 Eucalyptus grandis HOM05D003854 ORTHO05D004415 8.6e-39 164.1 132 60.6
MD10G1062200 Malus domestica HOM05D003854 ORTHO05D004415 1.1e-38 163.7 137 59.9
Prupe.8G083500 Prunus persica HOM05D003854 ORTHO05D004415 1.1e-38 163.7 133 60.9
AUR62016846 Chenopodium quinoa HOM05D003854 ORTHO05D004415 1.9e-38 162.9 132 58.3
GSVIVG01024163001 Vitis vinifera HOM05D003854 ORTHO05D004415 3.3e-38 162.2 132 60.6
Aqoxy6G02342 Aquilegia oxysepala HOM05D003854 ORTHO05D004415 3.6e-37 158.7 131 60.3
RcHm_v2.0_Chr6g0268341 Rosa chinensis HOM05D003854 ORTHO05D004415 8.0e-37 157.5 132 58.3
TAR376G0190 Trochodendron aralioides HOM05D003854 ORTHO05D004415 8.0e-37 157.5 131 61.1
Dinv41992 Davidia involucrata HOM05D003854 ORTHO05D004415 1.0e-36 157.1 131 58.8
PSO541G5287 Papaver somniferum HOM05D003854 ORTHO05D004415 2.3e-36 156.0 134 59.0
PSO675G2881 Papaver somniferum HOM05D003854 ORTHO05D004415 2.3e-36 156.0 134 58.2
Lalb_Chr01g0002121 Lupinus albus HOM05D003854 ORTHO05D004415 3.0e-36 155.6 131 61.1
COL.COLO4_10619 Corchorus olitorius HOM05D003854 ORTHO05D004415 4.0e-36 155.2 131 58.0
EL10Ac9g21623 Beta vulgaris HOM05D003854 ORTHO05D004415 5.2e-36 154.8 132 56.8
FvH4_2g10640 Fragaria vesca HOM05D003854 ORTHO05D004415 5.2e-36 154.8 133 57.1
FAN15G1017 Fragaria x ananassa HOM05D003854 ORTHO05D004415 6.8e-36 154.5 133 57.1
Atru.chr5.3170 Acer truncatum HOM05D003854 ORTHO05D004415 1.2e-35 153.7 131 55.7
Hma1.2p1_0066F.1_g035740 Hydrangea macrophylla HOM05D003854 ORTHO05D004415 1.2e-35 153.7 149 52.3
FAN24G1697 Fragaria x ananassa HOM05D003854 ORTHO05D004415 2.0e-35 152.9 133 56.4
Hma1.2p1_0218F.1_g092290 Hydrangea macrophylla HOM05D003854 ORTHO05D004415 2.6e-35 152.5 150 50.7
Ciclev10028796m.g Citrus clementina HOM05D003854 ORTHO05D004415 4.4e-35 151.8 146 53.4
Gohir.A02G169600 Gossypium hirsutum HOM05D003854 ORTHO05D004415 4.4e-35 151.8 131 57.3
PGR042G3425 Punica granatum HOM05D003854 ORTHO05D004415 4.4e-35 151.8 130 57.7
Ah.01g018700 Amaranthus hybridus HOM05D003854 ORTHO05D004415 2.2e-34 149.4 132 53.0
C07p07190 Brassica napus HOM05D003854 ORTHO05D004415 2.2e-34 149.4 131 58.0
BolC7t41138H Brassica oleracea HOM05D003854 ORTHO05D004415 2.2e-34 149.4 131 58.0
Duzib248G1248 Durio zibethinus HOM05D003854 ORTHO05D004415 2.2e-34 149.4 131 54.2
FAN27G2026 Fragaria x ananassa HOM05D003854 ORTHO05D004415 2.9e-34 149.1 133 54.9
Gohir.D03G010400 Gossypium hirsutum HOM05D003854 ORTHO05D004415 2.9e-34 149.1 131 56.5
Psat7g139560 Pisum sativum HOM05D003854 ORTHO05D004415 3.7e-34 148.7 131 55.7
vmacro17417 Vaccinium macrocarpon HOM05D003854 ORTHO05D004415 3.7e-34 148.7 132 56.1
arahy.Tifrunner.gnm1.ann1.29MT7J Arachis hypogaea HOM05D003854 ORTHO05D004415 4.9e-34 148.3 109 64.2
arahy.Tifrunner.gnm1.ann1.JJ9I6U Arachis hypogaea HOM05D003854 ORTHO05D004415 4.9e-34 148.3 109 64.2
Gorai.003G010800 Gossypium raimondii HOM05D003854 ORTHO05D004415 4.9e-34 148.3 131 56.5
Potri.004G163600 Populus trichocarpa HOM05D003854 ORTHO05D004415 4.9e-34 148.3 131 55.7
Lj5A188T38 Lonicera japonica HOM05D003854 ORTHO05D004415 8.3e-34 147.5 132 58.3
arahy.Tifrunner.gnm1.ann1.3VNM1Z Arachis hypogaea HOM05D003854 ORTHO05D004415 1.1e-33 147.1 109 64.2
TPR.G28160 Trifolium pratense HOM05D003854 ORTHO05D004415 1.1e-33 147.1 131 55.7
Medtr4g072070 Medicago truncatula HOM05D003854 ORTHO05D004415 1.4e-33 146.7 131 55.7
Glyma.12G036600 Glycine max HOM05D003854 ORTHO05D004415 2.4e-33 146.0 131 53.4
Oeu060416.1 Olea europaea HOM05D003854 ORTHO05D004415 2.4e-33 146.0 131 52.7
Thecc.02G073800 Theobroma cacao HOM05D003854 ORTHO05D004415 2.4e-33 146.0 131 54.2
Glyma.11G110300 Glycine max HOM05D003854 ORTHO05D004415 3.2e-33 145.6 131 53.4
THA.LOC104807290 Tarenaya hassleriana HOM05D003854 ORTHO05D004415 4.1e-33 145.2 132 55.3
Ca_20939_v3 Cicer arietinum L. HOM05D003854 ORTHO05D004415 9.2e-33 144.1 132 54.5
Manes.04G064400 Manihot esculenta HOM05D003854 ORTHO05D004415 9.2e-33 144.1 132 54.5
Zm00001eb428540 Zea mays HOM05D003854 ORTHO05D004415 9.2e-33 144.1 132 53.8
MSTRG.16879 Avicennia marina HOM05D003854 ORTHO05D004415 1.2e-32 143.7 131 55.7
Lj3g0001283 Lotus japonicus HOM05D003854 ORTHO05D004415 1.2e-32 143.7 131 54.2
Rhsim05G0067900 Rhododendron simsii HOM05D003854 ORTHO05D004415 1.2e-32 143.7 135 54.8
Nitab4.5_0008276g0050 Nicotiana tabacum HOM05D003854 ORTHO05D004415 2.0e-32 142.9 131 58.0
Potri.009G125200 Populus trichocarpa HOM05D003854 ORTHO05D004415 2.0e-32 142.9 131 54.2
Aa31LG10G12850 Aethionema arabicum HOM05D003854 ORTHO05D004415 2.7e-32 142.5 131 56.5
Duzib147G1035 Durio zibethinus HOM05D003854 ORTHO05D004415 2.7e-32 142.5 131 53.4
Gohir.D10G253300 Gossypium hirsutum HOM05D003854 ORTHO05D004415 2.7e-32 142.5 131 55.0
MBI19_g04330_MAGBIO Magnolia biondii HOM05D003854 ORTHO05D004415 2.7e-32 142.5 131 53.4
Sp3g29800 Schrenkiella parvula HOM05D003854 ORTHO05D004415 2.7e-32 142.5 131 55.7
Thecc.01G021700 Theobroma cacao HOM05D003854 ORTHO05D004415 2.7e-32 142.5 131 53.4
arahy.Tifrunner.gnm1.ann1.QESS4Q Arachis hypogaea HOM05D003854 ORTHO05D004415 3.5e-32 142.1 109 61.5
HanXRQChr15g0478351 Helianthus annuus HOM05D003854 ORTHO05D004415 3.5e-32 142.1 132 57.6
Lsat_1_v5_gn_3_44581 Lactuca sativa HOM05D003854 ORTHO05D004415 3.5e-32 142.1 131 57.3
Nitab4.5_0005266g0010 Nicotiana tabacum HOM05D003854 ORTHO05D004415 3.5e-32 142.1 131 57.3
BcaB03g16370 Brassica carinata HOM05D003854 ORTHO05D004415 5.9e-32 141.4 132 53.8
Gorai.011G293600 Gossypium raimondii HOM05D003854 ORTHO05D004415 5.9e-32 141.4 131 54.2
RcHm_v2.0_Chr6g0268321 Rosa chinensis HOM05D003854 ORTHO05D004415 5.9e-32 141.4 127 56.7
Hund00176 Selenicereus undatus HOM05D003854 ORTHO05D004415 5.9e-32 141.4 132 50.0
VMungo1127G2166 Vigna mungo HOM05D003854 ORTHO05D004415 5.9e-32 141.4 131 51.9
Gohir.A10G241100 Gossypium hirsutum HOM05D003854 ORTHO05D004415 7.8e-32 141.0 131 53.4
Os04g0576800 Oryza sativa ssp. japonica HOM05D003854 ORTHO05D004415 7.8e-32 141.0 128 53.9
GSVIVG01018810001 Vitis vinifera HOM05D003854 ORTHO05D004415 7.8e-32 141.0 131 51.9
Cc02_g16850 Coffea canephora HOM05D003854 ORTHO05D004415 1.0e-31 140.6 131 55.7
Zm00001eb073390 Zea mays HOM05D003854 ORTHO05D004415 1.0e-31 140.6 147 49.7
CiPaw.05G074000 Carya illinoinensis HOM05D003854 ORTHO05D004415 1.3e-31 140.2 96 68.8
Solyc01g110460.4 Solanum lycopersicum HOM05D003854 ORTHO05D004415 1.3e-31 140.2 132 55.3
Sopen01g052590 Solanum pennellii HOM05D003854 ORTHO05D004415 1.3e-31 140.2 132 55.3
Actinidia20473 Actinidia chinensis HOM05D003854 ORTHO05D004415 1.7e-31 139.8 133 53.4
Carub.0003s3031 Capsella rubella HOM05D003854 ORTHO05D004415 1.7e-31 139.8 131 53.4
Duzib187G0007 Durio zibethinus HOM05D003854 ORTHO05D004415 1.7e-31 139.8 131 54.2
Phvul.011G038300 Phaseolus vulgaris HOM05D003854 ORTHO05D004415 1.7e-31 139.8 131 51.1
Hund00184 Selenicereus undatus HOM05D003854 ORTHO05D004415 1.7e-31 139.8 132 49.2
Thhalv10022773m.g Eutrema salsugineum HOM05D003854 ORTHO05D004415 2.3e-31 139.4 131 56.5
SalBow3G0187 Salvia bowleyana HOM05D003854 ORTHO05D004415 2.3e-31 139.4 132 54.5
CAN.G170.108 Capsicum annuum HOM05D003854 ORTHO05D004415 3.9e-31 138.7 131 55.0
AL6G49210 Arabidopsis lyrata HOM05D003854 ORTHO05D004415 5.0e-31 138.3 131 52.7
HPP92_014428 Vanilla planifolia HOM05D003854 ORTHO05D004415 5.0e-31 138.3 140 52.1
AT2G16530 Arabidopsis thaliana HOM05D003854 ORTHO05D004415 8.6e-31 137.5 131 53.4
Migut.H02258 Erythranthe guttata HOM05D003854 ORTHO05D004415 8.6e-31 137.5 132 54.5
COL.COLO4_21950 Corchorus olitorius HOM05D003854 ORTHO05D004415 1.1e-30 137.1 131 53.4
ECA246G0289 Erigeron canadensis HOM05D003854 ORTHO05D004415 1.1e-30 137.1 132 55.3
Aa31LG8G13840 Aethionema arabicum HOM05D003854 ORTHO05D004415 1.5e-30 136.7 131 54.2
ECA248G3380 Erigeron canadensis HOM05D003854 ORTHO05D004415 1.5e-30 136.7 132 54.5
AL3G49110 Arabidopsis lyrata HOM05D003854 ORTHO05D004415 1.9e-30 136.3 131 52.7
Sabra09G0096200 Salix brachista HOM05D003854 ORTHO05D004415 1.9e-30 136.3 131 52.7
SGA_v2.0_scaffold2G00942 Striga asiatica HOM05D003854 ORTHO05D004415 1.9e-30 136.3 152 50.0
ATR0149G029 Amborella trichopoda HOM05D003854 ORTHO05D004415 2.5e-30 136.0 131 52.7
arahy.Tifrunner.gnm1.ann1.E6R97N Arachis hypogaea HOM05D003854 ORTHO05D004415 2.5e-30 136.0 109 58.7
FvH4_2g10631 Fragaria vesca HOM05D003854 ORTHO05D004415 7.3e-30 134.4 139 51.1
CARHR106750 Cardamine hirsuta HOM05D003854 ORTHO05D004415 1.2e-29 133.7 131 55.7
Sp3g29790 Schrenkiella parvula HOM05D003854 ORTHO05D004415 2.1e-29 132.9 131 54.2
arahy.Tifrunner.gnm1.ann1.VP2AIV Arachis hypogaea HOM05D003854 ORTHO05D004415 4.7e-29 131.7 108 57.4
BraA07t28241Z Brassica rapa HOM05D003854 ORTHO05D004415 6.2e-29 131.3 131 53.4
Sp3g29780 Schrenkiella parvula HOM05D003854 ORTHO05D004415 6.2e-29 131.3 131 55.0
Aqoxy3G00105 Aquilegia oxysepala HOM05D003854 ORTHO05D004415 1.4e-28 130.2 110 58.2
Os07g0493400 Oryza sativa ssp. japonica HOM05D003854 ORTHO05D004415 4.0e-28 128.6 128 51.6
Thhalv10000231m.g Eutrema salsugineum HOM05D003854 ORTHO05D004415 2.0e-27 126.3 131 52.7
Sc18g0005420 Simmondsia chinensis HOM05D003854 ORTHO05D004415 9.8e-27 124.0 131 47.3
SEGI_09637 Sequoiadendron giganteum HOM05D003854 ORTHO05D004415 1.7e-26 123.2 131 46.6
AT1G72590 Arabidopsis thaliana HOM05D003854 ORTHO05D004415 2.2e-26 122.9 138 48.6
Cpa.g.sc150.10 Carica papaya HOM05D003854 ORTHO05D004415 2.2e-26 122.9 132 50.0
TWI38G0305 Tripterygium wilfordii HOM05D003854 ORTHO05D004415 4.9e-26 121.7 131 49.6
BcaC06g36152 Brassica carinata HOM05D003854 ORTHO05D004415 6.4e-26 121.3 131 50.4
BcaC04g23013 Brassica carinata HOM05D003854 ORTHO05D004415 3.5e-24 115.5 114 57.0
BcaC04g23014 Brassica carinata HOM05D003854 ORTHO05D004415 3.5e-24 115.5 114 57.0
C09p13040 Brassica napus HOM05D003854 ORTHO05D004415 3.5e-24 115.5 114 57.0
BolC9t54197H Brassica oleracea HOM05D003854 ORTHO05D004415 4.6e-24 115.2 115 58.3
CSS0003544 Camellia sinensis var. sinensis HOM05D003854 ORTHO05D004415 6.0e-24 114.8 99 58.6
A09p11030 Brassica napus HOM05D003854 ORTHO05D004415 7.8e-24 114.4 112 56.2
Lsat_1_v5_gn_3_44301 Lactuca sativa HOM05D003854 ORTHO05D004415 3.0e-23 112.5 115 51.3
BraA09t36743Z Brassica rapa HOM05D003854 ORTHO05D004415 5.0e-23 111.7 108 56.5
A03p45880 Brassica napus HOM05D003854 ORTHO05D004415 1.1e-22 110.5 116 50.9
Thecc.10G037600 Theobroma cacao HOM05D003854 ORTHO05D004415 1.1e-22 110.5 136 45.6
BraA03t13718Z Brassica rapa HOM05D003854 ORTHO05D004415 2.1e-21 106.3 116 48.3
BcaC01g03007 Brassica carinata HOM05D003854 ORTHO05D004415 4.7e-21 105.1 113 52.2
C03p57250 Brassica napus HOM05D003854 ORTHO05D004415 4.7e-21 105.1 113 52.2
BcaC01g03005 Brassica carinata HOM05D003854 ORTHO05D004415 3.1e-20 102.4 116 50.9
BcaB08g34654 Brassica carinata HOM05D003854 ORTHO05D004415 4.0e-20 102.1 110 50.0
A03p45890 Brassica napus HOM05D003854 ORTHO05D004415 4.0e-20 102.1 116 50.0
Gohir.D13G096525 Gossypium hirsutum HOM05D003854 ORTHO05D004415 1.2e-19 100.5 118 45.8
Gohir.A13G086490 Gossypium hirsutum HOM05D003854 ORTHO05D004415 2.6e-19 99.4 123 43.9
Gorai.001G243600 Gossypium raimondii HOM05D003854 ORTHO05D004415 3.4e-19 99.0 118 44.9
Lsat_1_v5_gn_3_44541 Lactuca sativa HOM05D003854 ORTHO05D004415 3.4e-19 99.0 117 50.4
CDE04G0582 Ceratophyllum demersum HOM05D003854 ORTHO05D004415 1.9e-17 93.2 108 47.2
arahy.Tifrunner.gnm1.ann1.EIL6RR Arachis hypogaea HOM05D003854 ORTHO05D004415 5.4e-17 91.7 76 59.2
Atru.chr5.3158 Acer truncatum HOM05D003854 ORTHO05D004415 2.7e-16 89.4 66 60.6
arahy.Tifrunner.gnm1.ann1.DJ2H3Y Arachis hypogaea HOM05D003854 ORTHO05D004415 1.0e-15 87.4 129 41.9
C03p57260 Brassica napus HOM05D003854 ORTHO05D004415 3.0e-15 85.9 69 65.2
BolC3t18002H Brassica oleracea HOM05D003854 ORTHO05D004415 3.0e-15 85.9 69 65.2
A07p04500 Brassica napus HOM05D003854 ORTHO05D004415 5.1e-15 85.1 66 62.1
SMO367G0753 Selaginella moellendorffii HOM05D003854 ORTHO05D004415 1.1e-14 84.0 114 43.9
HanXRQChr17g0544071 Helianthus annuus HOM05D003854 ORTHO05D004415 1.5e-14 83.6 77 50.6
FAN15G1606 Fragaria x ananassa HOM05D003854 ORTHO05D004415 1.9e-14 83.2 61 63.9
Peaxi162Scf00016g00041 Petunia axillaris HOM05D003854 ORTHO05D004415 2.5e-14 82.8 108 49.1
FAN20G2911 Fragaria x ananassa HOM05D003854 ORTHO05D004415 5.6e-14 81.6 66 59.1
DCAR_029109 Daucus carota HOM05D003854 ORTHO05D004415 1.5e-11 73.6 81 51.9
AUR62010373 Chenopodium quinoa HOM05D003854 ORTHO05D004415 2.6e-11 72.8 62 54.8
SEGI_30689 Sequoiadendron giganteum HOM05D003854 ORTHO05D004415 4.4e-11 72.0 66 53.0
Atru.chr5.3157 Acer truncatum HOM05D003854 ORTHO05D004415 1.4e-09 67.0 72 45.8
Pp3c2_14820 Physcomitrium patens HOM05D003854 ORTHO05D004415 3.2e-09 65.9 116 34.5
Mapoly0130s0019 Marchantia polymorpha HOM05D003854 ORTHO05D004415 1.2e-08 63.9 117 36.8
BolC3t18001H Brassica oleracea HOM05D003854 ORTHO05D004415 4.6e-08 62.0 49 67.3
BraA03t13719Z Brassica rapa HOM05D003854 ORTHO05D004415 7.8e-08 61.2 112 40.2
CBR_g38102 Chara braunii HOM05D003854 ORTHO05D004415 5.1e-07 58.5 51 51.0
MELO3C035508.2 Cucumis melo HOM05D003854 ORTHO05D004415 1.1e-06 57.4 30 83.3


User provided reference genes

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