Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 3.2e-102 375.2 198 100.0
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 1.3e-84 316.6 198 84.3
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 2.4e-81 305.8 186 85.5
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 2.0e-80 302.8 199 80.4
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 1.5e-72 276.6 194 77.8
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.9e-67 259.6 198 74.7
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 9.6e-67 257.3 198 70.2
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 5.5e-46 188.3 192 54.2
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 1.2e-45 187.2 192 55.7
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.2e-45 187.2 160 63.8
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 7.9e-45 184.5 185 54.1
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 3.0e-44 182.6 197 52.3
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.1e-43 180.6 196 50.5
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 1.1e-43 180.6 157 61.8
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 1.5e-43 180.3 151 60.3
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 1.5e-43 180.3 151 60.3
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 9.7e-43 177.6 151 60.9
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 1.3e-42 177.2 155 58.1
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 6.9e-41 171.4 164 53.0
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 6.9e-41 171.4 189 48.7
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 2.9e-39 166.0 164 53.0
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 3.8e-39 165.6 156 55.1
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 7.2e-38 161.4 136 58.8
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 2.3e-36 156.4 173 49.7
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 2.0e-35 153.3 140 55.7
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 4.4e-35 152.1 167 49.7
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 6.3e-34 148.3 140 54.3
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 1.1e-33 147.5 166 47.6
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 1.1e-33 147.5 166 47.6
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 1.8e-33 146.7 139 50.4
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 5.3e-33 145.2 149 49.7
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 5.3e-33 145.2 148 52.0
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 7.0e-33 144.8 160 49.4
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 1.6e-32 143.7 154 49.4
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 4.5e-32 142.1 168 45.8
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 5.9e-32 141.7 161 44.7
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 5.9e-32 141.7 169 45.6
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 5.9e-32 141.7 169 45.6
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 7.7e-32 141.4 164 47.6
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.3e-31 140.6 168 44.6
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 5.0e-31 138.7 153 47.7
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 8.5e-31 137.9 155 48.4
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 8.5e-31 137.9 150 48.7
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 1.9e-30 136.7 185 43.8
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 1.9e-30 136.7 156 48.1
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 5.5e-30 135.2 173 44.5
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 5.5e-30 135.2 185 43.2
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 5.5e-30 135.2 185 43.2
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 5.5e-30 135.2 173 44.5
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 5.5e-30 135.2 157 47.1
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 9.4e-30 134.4 158 46.8
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 9.4e-30 134.4 151 49.0
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 1.6e-29 133.7 173 43.4
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.0e-28 129.0 129 49.6
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 4.0e-28 129.0 139 44.6
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.1e-27 127.5 154 46.1
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 2.6e-27 126.3 154 44.2
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 4.4e-27 125.6 139 44.6
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 7.5e-27 124.8 137 51.8
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.3e-26 124.0 152 46.1
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.7e-26 123.6 142 42.3
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 1.7e-26 123.6 154 43.5
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 2.8e-26 122.9 169 39.6
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 1.8e-25 120.2 106 62.3
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 2.4e-25 119.8 143 42.0
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 2.4e-25 119.8 143 42.0
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 4.5e-24 115.5 115 49.6
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 5.9e-24 115.2 93 57.0
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 2.2e-23 113.2 140 42.9
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 2.2e-23 113.2 117 48.7
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 3.8e-23 112.5 129 48.1
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 8.5e-23 111.3 164 38.4
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 1.9e-22 110.2 177 38.4
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 7.2e-22 108.2 129 43.4
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 2.1e-21 106.7 161 37.3
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 3.6e-21 105.9 151 39.1
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 3.6e-21 105.9 151 37.1
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 4.7e-21 105.5 129 45.0
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 6.1e-21 105.1 147 39.5
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 8.0e-21 104.8 129 41.1
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 8.0e-21 104.8 129 41.1
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 8.0e-21 104.8 153 40.5
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 1.0e-20 104.4 148 38.5
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 1.8e-20 103.6 130 43.8
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 1.8e-20 103.6 138 42.8
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 2.3e-20 103.2 150 38.0
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 2.3e-20 103.2 150 36.7
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 3.0e-20 102.8 156 39.1
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 4.0e-20 102.4 149 36.9
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 5.2e-20 102.1 159 39.0
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 5.2e-20 102.1 149 36.9
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 6.8e-20 101.7 129 40.3
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 8.8e-20 101.3 147 38.1
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 8.8e-20 101.3 149 38.9
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 1.5e-19 100.5 151 39.1
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 2.0e-19 100.1 145 40.7
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 2.6e-19 99.8 117 45.3
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 3.4e-19 99.4 155 36.1
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 3.4e-19 99.4 94 51.1
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 4.4e-19 99.0 152 36.8
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 5.7e-19 98.6 114 46.5
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 7.5e-19 98.2 162 37.0
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 7.5e-19 98.2 147 35.4
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 7.5e-19 98.2 182 33.5
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 1.3e-18 97.4 155 33.5
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 1.3e-18 97.4 196 32.7
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 1.3e-18 97.4 146 36.3
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 1.3e-18 97.4 128 42.2
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 1.7e-18 97.1 152 36.2
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.7e-18 97.1 97 44.3
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 2.2e-18 96.7 175 36.0
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 2.8e-18 96.3 116 45.7
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 2.8e-18 96.3 171 33.9
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 2.8e-18 96.3 153 34.0
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 2.8e-18 96.3 177 33.9
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 2.8e-18 96.3 154 36.4
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 4.8e-18 95.5 158 34.8
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 6.3e-18 95.1 148 41.2
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 8.3e-18 94.7 153 38.6
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 1.1e-17 94.4 156 36.5
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.1e-17 94.4 168 33.9
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 1.4e-17 94.0 149 38.9
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.8e-17 93.6 148 33.8
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 3.1e-17 92.8 129 38.0
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 3.1e-17 92.8 161 37.9
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 4.1e-17 92.4 140 36.4
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 4.1e-17 92.4 172 32.6
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 5.4e-17 92.0 131 37.4
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 7.0e-17 91.7 157 35.7
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 7.0e-17 91.7 141 38.3
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 7.0e-17 91.7 130 37.7
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 9.1e-17 91.3 148 37.2
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 9.1e-17 91.3 188 34.0
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 9.1e-17 91.3 163 36.8
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.2e-16 90.9 151 38.4
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 1.2e-16 90.9 193 32.1
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 1.6e-16 90.5 131 37.4
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 1.6e-16 90.5 144 36.8
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 2.0e-16 90.1 132 37.9
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 2.0e-16 90.1 132 37.9
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 3.5e-16 89.4 151 32.5
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 3.5e-16 89.4 144 37.5
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 4.5e-16 89.0 193 31.6
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 7.7e-16 88.2 145 36.6
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 7.7e-16 88.2 160 32.5
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.3e-15 87.4 153 35.3
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 1.7e-15 87.0 186 33.9
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 1.7e-15 87.0 150 35.3
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 2.2e-15 86.7 122 39.3
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 2.9e-15 86.3 130 35.4
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 6.5e-15 85.1 170 33.5
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 1.1e-14 84.3 158 34.8
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 2.1e-13 80.1 143 34.3
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 2.3e-12 76.6 130 33.8
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 2.2e-10 70.1 95 37.9
FAN02G2952 Fragaria x ananassa HOM05D000062 ORTHO05D000043 6.3e-10 68.6 62 61.3
FAN05G2299 Fragaria x ananassa HOM05D003663 ORTHO05D005327 1.0e-07 61.2 67 56.7
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 2.3e-07 60.1 85 31.8
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 5.0e-07 58.9 103 37.9
BcaC03g17870 Brassica carinata HOM05D011290 ORTHO05D010021 1.1e-06 57.8 76 43.4
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 2.5e-06 56.6 57 42.1


User provided reference genes

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