Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C028527.2 Cucumis melo HOM05D005049 ORTHO05D006032 4.5e-82 307.8 144 100.0
MELO3C032284.2 Cucumis melo HOM05D005049 ORTHO05D006032 1.1e-43 180.3 126 73.0
MELO3C034539.2 Cucumis melo HOM05D005049 ORTHO05D006032 7.8e-34 147.5 74 90.5
MELO3C032147.2 Cucumis melo HOM05D005049 ORTHO05D006032 4.3e-32 141.7 78 85.9
MELO3C009957.2 Cucumis melo HOM05D005049 ORTHO05D006032 3.1e-30 135.6 66 92.4
CsaV3_3G042430 Cucumis sativus L. HOM05D005049 ORTHO05D006032 1.5e-29 133.3 65 92.3
MELO3C035028.2 Cucumis melo HOM05D005049 ORTHO05D006032 5.8e-29 131.3 67 86.6
MELO3C033934.2 Cucumis melo HOM05D005049 ORTHO05D006032 1.7e-28 129.8 63 90.5
Sed0008163 Sechium edule HOM05D005049 ORTHO05D006032 1.5e-24 116.7 66 81.8
ClCG10G014210 Citrullus lanatus HOM05D005049 ORTHO05D006032 9.0e-22 107.5 65 75.4
Dinv35060 Davidia involucrata HOM05D005049 ORTHO05D006032 3.6e-15 85.5 61 65.6
vmacro05822 Vaccinium macrocarpon HOM05D005049 ORTHO05D006032 1.8e-14 83.2 73 58.9
Cfa007428 Carpinus fangiana HOM05D005049 ORTHO05D006032 3.1e-14 82.4 61 59.0
MBI16_g40725_MAGBIO Magnolia biondii HOM05D005049 ORTHO05D006032 5.3e-14 81.6 57 63.2
CANSAT64G0408 Cannabis sativa HOM05D005049 ORTHO05D006032 6.9e-14 81.3 51 72.5
TPR.G25677 Trifolium pratense HOM05D005049 ORTHO05D006032 9.0e-14 80.9 63 65.1
Medtr6g007165 Medicago truncatula HOM05D005049 ORTHO05D006032 1.2e-13 80.5 50 74.0
Psat1g056840 Pisum sativum HOM05D005049 ORTHO05D006032 1.5e-13 80.1 50 74.0
Actinidia35742 Actinidia chinensis HOM05D005049 ORTHO05D006032 2.0e-13 79.7 73 57.5
Manes.17G121600 Manihot esculenta HOM05D005049 ORTHO05D006032 2.6e-13 79.3 61 63.9
Oeu004708.3 Olea europaea HOM05D005049 ORTHO05D006032 2.6e-13 79.3 47 70.2
TPR.G2274 Trifolium pratense HOM05D005049 ORTHO05D006032 2.6e-13 79.3 63 63.5
Actinidia36083 Actinidia chinensis HOM05D005049 ORTHO05D006032 3.4e-13 79.0 68 58.8
Migut.H00120 Erythranthe guttata HOM05D005049 ORTHO05D006032 3.4e-13 79.0 47 72.3
Thecc.04G008900 Theobroma cacao HOM05D005049 ORTHO05D006032 3.4e-13 79.0 49 75.5
Prupe.3G284100 Prunus persica HOM05D005049 ORTHO05D006032 4.5e-13 78.6 68 58.8
Ca_04197_v3 Cicer arietinum L. HOM05D005049 ORTHO05D006032 5.8e-13 78.2 47 78.7
Glyma.13G168600 Glycine max HOM05D005049 ORTHO05D006032 7.6e-13 77.8 47 76.6
Hma1.2p1_0858F.1_g229450 Hydrangea macrophylla HOM05D005049 ORTHO05D006032 7.6e-13 77.8 49 71.4
Lalb_Chr02g0160341 Lupinus albus HOM05D005049 ORTHO05D006032 7.6e-13 77.8 50 70.0
Haze_14669 Corylus avellana HOM05D005049 ORTHO05D006032 9.9e-13 77.4 64 56.2
PSO017G6025 Papaver somniferum HOM05D005049 ORTHO05D006032 9.9e-13 77.4 56 64.3
Potri.017G073200 Populus trichocarpa HOM05D005049 ORTHO05D006032 9.9e-13 77.4 66 57.6
Phvul.004G014500 Phaseolus vulgaris HOM05D005049 ORTHO05D006032 1.3e-12 77.0 47 74.5
VMungo0464G1607 Vigna mungo HOM05D005049 ORTHO05D006032 1.3e-12 77.0 72 55.6
MSTRG.3171 Avicennia marina HOM05D005049 ORTHO05D006032 1.7e-12 76.6 47 68.1
DCAR_015040 Daucus carota HOM05D005049 ORTHO05D006032 1.7e-12 76.6 48 70.8
Glyma.06G185500 Glycine max HOM05D005049 ORTHO05D006032 1.7e-12 76.6 69 55.1
Lj2g0009991 Lotus japonicus HOM05D005049 ORTHO05D006032 1.7e-12 76.6 50 68.0
PSO478G2829 Papaver somniferum HOM05D005049 ORTHO05D006032 1.7e-12 76.6 56 64.3
PGR142G2968 Punica granatum HOM05D005049 ORTHO05D006032 1.7e-12 76.6 39 82.1
Ah.11g045070 Amaranthus hybridus HOM05D005049 ORTHO05D006032 2.2e-12 76.3 63 61.9
RcHm_v2.0_Chr2g0171441 Rosa chinensis HOM05D005049 ORTHO05D006032 2.2e-12 76.3 51 68.6
SGA_v2.0_scaffold205G41694 Striga asiatica HOM05D005049 ORTHO05D006032 2.2e-12 76.3 47 66.0
SGA_v2.0_scaffold66G22479 Striga asiatica HOM05D005049 ORTHO05D006032 2.2e-12 76.3 47 66.0
Eucgr.I01812 Eucalyptus grandis HOM05D005049 ORTHO05D006032 2.9e-12 75.9 40 80.0
MD17G1034700 Malus domestica HOM05D005049 ORTHO05D006032 2.9e-12 75.9 47 70.2
MD09G1034200 Malus domestica HOM05D005049 ORTHO05D006032 3.8e-12 75.5 46 73.9
Manes.17G121264 Manihot esculenta HOM05D005049 ORTHO05D006032 3.8e-12 75.5 62 62.9
HPP92_021346 Vanilla planifolia HOM05D005049 ORTHO05D006032 4.9e-12 75.1 51 66.7
HPP92_021351 Vanilla planifolia HOM05D005049 ORTHO05D006032 4.9e-12 75.1 51 66.7
CiPaw.03G037900 Carya illinoinensis HOM05D005049 ORTHO05D006032 8.4e-12 74.3 68 51.5
Prupe.6G347800 Prunus persica HOM05D005049 ORTHO05D006032 8.4e-12 74.3 60 60.0
RcHm_v2.0_Chr2g0150791 Rosa chinensis HOM05D005049 ORTHO05D006032 1.1e-11 73.9 51 66.7
ATR0730G137 Amborella trichopoda HOM05D005049 ORTHO05D006032 1.4e-11 73.6 47 70.2
Aqoxy3G01017 Aquilegia oxysepala HOM05D005049 ORTHO05D006032 1.4e-11 73.6 40 77.5
GSVIVG01032478001 Vitis vinifera HOM05D005049 ORTHO05D006032 1.4e-11 73.6 47 70.2
arahy.Tifrunner.gnm1.ann1.41NV30 Arachis hypogaea HOM05D005049 ORTHO05D006032 1.9e-11 73.2 50 66.0
arahy.Tifrunner.gnm1.ann1.B7LRKU Arachis hypogaea HOM05D005049 ORTHO05D006032 1.9e-11 73.2 50 66.0
arahy.Tifrunner.gnm1.ann1.EYLE23 Arachis hypogaea HOM05D005049 ORTHO05D006032 1.9e-11 73.2 50 66.0
QL02p076639 Quercus lobata HOM05D005049 ORTHO05D006032 1.9e-11 73.2 68 55.9
TAR622G0573 Trochodendron aralioides HOM05D005049 ORTHO05D006032 1.9e-11 73.2 47 68.1
FAN14G5348 Fragaria x ananassa HOM05D005049 ORTHO05D006032 3.2e-11 72.4 51 66.7
Nn4g22794 Nelumbo nucifera HOM05D005049 ORTHO05D006032 3.2e-11 72.4 47 68.1
ECA238G2197 Erigeron canadensis HOM05D005049 ORTHO05D006032 4.2e-11 72.0 63 54.0
Nitab4.5_0003337g0090 Nicotiana tabacum HOM05D005049 ORTHO05D006032 4.2e-11 72.0 63 57.1
RcHm_v2.0_Chr2g0158171 Rosa chinensis HOM05D005049 ORTHO05D006032 4.2e-11 72.0 49 67.3
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 5.4e-11 71.6 48 66.7
Manes.17G121440 Manihot esculenta HOM05D005049 ORTHO05D006032 5.4e-11 71.6 61 60.7
TWI12G0306 Tripterygium wilfordii HOM05D005049 ORTHO05D006032 5.4e-11 71.6 80 46.2
AagrBONN_evm.TU.Sc2ySwM_117.2022 Anthoceros agrestis HOM05D005049 ORTHO05D006032 7.1e-11 71.2 51 62.7
Cpa.g.sc39.89 Carica papaya HOM05D005049 ORTHO05D006032 7.1e-11 71.2 47 68.1
Ciclev10015290m.g Citrus clementina HOM05D005049 ORTHO05D006032 7.1e-11 71.2 65 58.5
Lj9C583G13 Lonicera japonica HOM05D005049 ORTHO05D006032 7.1e-11 71.2 66 53.0
THA.LOC104805397 Tarenaya hassleriana HOM05D005049 ORTHO05D006032 7.1e-11 71.2 45 71.1
Zm00001eb153900 Zea mays HOM05D005049 ORTHO05D006032 7.1e-11 71.2 60 53.3
ECA236G0066 Erigeron canadensis HOM05D000454 ORTHO05D006032 9.3e-11 70.9 63 54.0
FvH4_6g50640 Fragaria vesca HOM05D005049 ORTHO05D006032 9.3e-11 70.9 51 66.7
Nitab4.5_0005176g0050 Nicotiana tabacum HOM05D005049 ORTHO05D006032 9.3e-11 70.9 47 68.1
Atru.chr6.2298 Acer truncatum HOM05D005049 ORTHO05D006032 1.2e-10 70.5 39 82.1
AUR62040116 Chenopodium quinoa HOM05D005049 ORTHO05D006032 1.2e-10 70.5 47 70.2
Sc07g0003030 Simmondsia chinensis HOM05D005049 ORTHO05D006032 1.2e-10 70.5 47 70.2
EL10Ac2g02398 Beta vulgaris HOM05D005049 ORTHO05D006032 2.7e-10 69.3 47 66.0
MELO3C033889.2 Cucumis melo HOM05D005049 ORTHO05D006032 2.7e-10 69.3 30 93.3
HanXRQChr07g0198731 Helianthus annuus HOM05D005049 ORTHO05D006032 3.5e-10 68.9 40 75.0
MELO3C029173.2 Cucumis melo HOM05D005049 ORTHO05D006032 7.9e-10 67.8 31 87.1
Aa31LG9G1340 Aethionema arabicum HOM05D005049 ORTHO05D006032 3.0e-09 65.9 41 70.7
CBR_g12691 Chara braunii HOM05D005049 ORTHO05D006032 3.0e-09 65.9 40 70.0
SMO172G0207 Selaginella moellendorffii HOM05D005049 ORTHO05D006032 1.5e-08 63.5 40 65.0
A04p13200 Brassica napus HOM05D005049 ORTHO05D006032 2.5e-08 62.8 58 56.9
Cre14.g612500 Chlamydomonas reinhardtii HOM05D005049 ORTHO05D006032 2.5e-08 62.8 40 67.5
C04p46950 Brassica napus HOM05D005049 ORTHO05D006032 3.3e-08 62.4 58 55.2
BolC4t26289H Brassica oleracea HOM05D005049 ORTHO05D006032 3.3e-08 62.4 58 55.2
Mapoly0123s0027 Marchantia polymorpha HOM05D005049 ORTHO05D006032 3.3e-08 62.4 39 66.7
A04p15750 Brassica napus HOM05D005049 ORTHO05D006032 4.3e-08 62.0 40 67.5
BraA04t17209Z Brassica rapa HOM05D005049 ORTHO05D006032 4.3e-08 62.0 40 67.5
Thhalv10027764m.g Eutrema salsugineum HOM05D005049 ORTHO05D006032 4.3e-08 62.0 45 64.4
AT5G40280 Arabidopsis thaliana HOM05D005049 ORTHO05D006032 7.4e-08 61.2 40 67.5
BraA04t16979Z Brassica rapa HOM05D005049 ORTHO05D006032 7.4e-08 61.2 39 69.2
Sp7g01660 Schrenkiella parvula HOM05D005049 ORTHO05D006032 7.4e-08 61.2 39 69.2
Carub.0007s3535 Capsella rubella HOM05D005049 ORTHO05D006032 2.1e-07 59.7 39 66.7
MCO05G513 Micromonas commoda HOM05D005049 ORTHO05D006032 1.8e-06 56.6 40 60.0
Hund02271 Selenicereus undatus HOM05D005049 ORTHO05D006032 1.8e-06 56.6 32 78.1
PRCOL_00002137 Prasinoderma coloniale HOM05D005049 ORTHO05D006032 9.0e-06 54.3 46 52.2


User provided reference genes

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