Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C028506.2 Cucumis melo HOM05D002560 ORTHO05D003782 8.0e-54 213.4 99 100.0
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 4.6e-09 64.7 114 40.4
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 7.8e-09 63.9 114 41.2
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 3.0e-08 62.0 114 39.5
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 3.0e-08 62.0 114 39.5
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 3.9e-08 61.6 114 39.5
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 3.9e-08 61.6 114 39.5
Hund19809 Selenicereus undatus HOM05D002560 ORTHO05D003782 5.1e-08 61.2 114 39.5
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 5.1e-08 61.2 103 42.7
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 6.6e-08 60.8 114 38.6
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 6.6e-08 60.8 114 38.6
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 6.6e-08 60.8 114 38.6
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 6.6e-08 60.8 114 38.6
Lj3C943G3 Lonicera japonica HOM05D002560 ORTHO05D003782 6.6e-08 60.8 114 38.6
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 6.6e-08 60.8 114 38.6
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 6.6e-08 60.8 114 38.6
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 6.6e-08 60.8 114 38.6
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 6.6e-08 60.8 114 38.6
Duzib212G0261 Durio zibethinus HOM05D002560 ORTHO05D003782 8.6e-08 60.5 114 38.6
Sc20g0006790 Simmondsia chinensis HOM05D002560 ORTHO05D003782 8.6e-08 60.5 103 40.8
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 1.1e-07 60.1 103 40.8
AUR62006330 Chenopodium quinoa HOM05D002560 ORTHO05D003782 1.1e-07 60.1 103 40.8
HanXRQChr10g0288601 Helianthus annuus HOM05D002560 ORTHO05D003782 1.1e-07 60.1 103 40.8
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 1.1e-07 60.1 103 40.8
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 1.1e-07 60.1 103 40.8
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 1.1e-07 60.1 103 40.8
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 1.1e-07 60.1 103 40.8
Rhsim04G0123300 Rhododendron simsii HOM05D002560 ORTHO05D003782 1.1e-07 60.1 103 40.8
vmacro08922 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 1.1e-07 60.1 103 40.8
Cpa.g.sc86.8 Carica papaya HOM05D002560 ORTHO05D003782 1.5e-07 59.7 103 40.8
Nitab4.5_0000355g0160 Nicotiana tabacum HOM05D002560 ORTHO05D003782 1.5e-07 59.7 115 36.5
Peaxi162Scf00744g00021 Petunia axillaris HOM05D002560 ORTHO05D003782 1.5e-07 59.7 99 41.4
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 1.5e-07 59.7 114 37.7
VMungo1383G2495 Vigna mungo HOM05D002560 ORTHO05D003782 1.5e-07 59.7 113 38.9
Dinv25295 Davidia involucrata HOM05D002560 ORTHO05D003782 2.5e-07 58.9 103 39.8
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 2.5e-07 58.9 103 41.7
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 2.5e-07 58.9 103 41.7
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 2.5e-07 58.9 103 41.7
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 2.5e-07 58.9 103 41.7
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 2.5e-07 58.9 103 41.7
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 2.5e-07 58.9 103 41.7
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 2.5e-07 58.9 114 38.6
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 2.5e-07 58.9 114 38.6
Lalb_Chr19g0124111 Lupinus albus HOM05D002560 ORTHO05D003782 2.5e-07 58.9 114 38.6
Medtr7g072330 Medicago truncatula HOM05D002560 ORTHO05D003782 2.5e-07 58.9 114 38.6
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 2.5e-07 58.9 114 38.6
TPR.G35291 Trifolium pratense HOM05D002560 ORTHO05D003782 2.5e-07 58.9 114 38.6
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 3.3e-07 58.5 103 39.8
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 3.3e-07 58.5 99 40.4
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 4.3e-07 58.2 114 40.4
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 4.3e-07 58.2 114 40.4
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 4.3e-07 58.2 114 39.5
arahy.Tifrunner.gnm1.ann1.6VEX49 Arachis hypogaea HOM05D002560 ORTHO05D003782 5.6e-07 57.8 114 37.7
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 5.6e-07 57.8 103 39.8
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 7.3e-07 57.4 102 40.2
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 7.3e-07 57.4 114 38.6
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 7.3e-07 57.4 114 38.6
Atru.chr8.2364 Acer truncatum HOM05D002560 ORTHO05D003782 9.5e-07 57.0 102 41.2
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 9.5e-07 57.0 103 38.8
Ca_07738_v3 Cicer arietinum L. HOM05D002560 ORTHO05D003782 9.5e-07 57.0 103 39.8
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 9.5e-07 57.0 114 37.7
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 9.5e-07 57.0 114 38.6
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 9.5e-07 57.0 114 37.7
Potri.016G132000 Populus trichocarpa HOM05D002560 ORTHO05D003782 9.5e-07 57.0 114 37.7
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 9.5e-07 57.0 114 37.7
Aa31LG5G18820 Aethionema arabicum HOM05D002560 ORTHO05D003782 1.2e-06 56.6 99 40.4
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 1.2e-06 56.6 103 39.8
AL3G19840 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 1.2e-06 56.6 99 40.4
AT3G08850 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 1.2e-06 56.6 99 40.4
BcaB04g18570 Brassica carinata HOM05D002560 ORTHO05D003782 1.2e-06 56.6 99 40.4
BcaC01g04199 Brassica carinata HOM05D002560 ORTHO05D003782 1.2e-06 56.6 99 40.4
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 1.2e-06 56.6 99 40.4
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 1.2e-06 56.6 99 40.4
BolC3t16666H Brassica oleracea HOM05D002560 ORTHO05D003782 1.2e-06 56.6 99 40.4
Carub.0003s0796 Capsella rubella HOM05D002560 ORTHO05D003782 1.2e-06 56.6 99 40.4
CARHR083160 Cardamine hirsuta HOM05D002560 ORTHO05D003782 1.2e-06 56.6 99 40.4
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 1.2e-06 56.6 114 38.6
Thhalv10019904m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 1.2e-06 56.6 99 40.4
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.2e-06 56.6 114 37.7
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.2e-06 56.6 114 37.7
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 1.2e-06 56.6 114 37.7
Sp3g07250 Schrenkiella parvula HOM05D002560 ORTHO05D003782 1.2e-06 56.6 99 40.4
SGA_v2.0_scaffold373G50169 Striga asiatica HOM05D002560 ORTHO05D003782 1.2e-06 56.6 110 38.2
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 1.6e-06 56.2 102 39.2
CARHR212130 Cardamine hirsuta HOM05D002560 ORTHO05D003782 1.6e-06 56.2 103 39.8
Duzib151G0314 Durio zibethinus HOM05D002560 ORTHO05D003782 1.6e-06 56.2 114 38.6
Psat3g122440 Pisum sativum HOM05D002560 ORTHO05D003782 1.6e-06 56.2 99 39.4
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.6e-06 56.2 103 39.8
Aa31LG1G23430 Aethionema arabicum HOM05D002560 ORTHO05D003782 2.1e-06 55.8 103 37.9
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 2.1e-06 55.8 103 40.8
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 2.1e-06 55.8 102 39.2
Lalb_Chr01g0023591 Lupinus albus HOM05D002560 ORTHO05D003782 2.1e-06 55.8 114 38.6
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 2.1e-06 55.8 103 38.8
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 2.1e-06 55.8 103 40.8
arahy.Tifrunner.gnm1.ann1.TV2NT7 Arachis hypogaea HOM05D002560 ORTHO05D003782 2.8e-06 55.5 103 38.8
A05p39970 Brassica napus HOM05D002560 ORTHO05D003782 2.8e-06 55.5 99 40.4
C05p59010 Brassica napus HOM05D002560 ORTHO05D003782 2.8e-06 55.5 99 40.4
Glyma.18G210300 Glycine max HOM05D002560 ORTHO05D003782 2.8e-06 55.5 114 37.7
Manes.09G114600 Manihot esculenta HOM05D002560 ORTHO05D003782 2.8e-06 55.5 114 36.0
TPR.G35288 Trifolium pratense HOM05D002560 ORTHO05D003782 2.8e-06 55.5 110 37.3
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 2.8e-06 55.5 114 38.6
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 3.6e-06 55.1 102 39.2
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 4.7e-06 54.7 103 38.8
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 4.7e-06 54.7 103 38.8
Nitab4.5_0002009g0040 Nicotiana tabacum HOM05D002560 ORTHO05D003782 4.7e-06 54.7 103 37.9
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 4.7e-06 54.7 103 38.8
TAR623G1646 Trochodendron aralioides HOM05D002560 ORTHO05D003782 4.7e-06 54.7 114 36.8
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 6.2e-06 54.3 102 38.2
Thhalv10012449m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 6.2e-06 54.3 103 37.9
Eucgr.K01257 Eucalyptus grandis HOM05D002560 ORTHO05D003782 8.1e-06 53.9 114 35.1
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 8.1e-06 53.9 114 36.8
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 8.1e-06 53.9 114 36.8
THA.LOC104823313 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 8.1e-06 53.9 103 38.8


User provided reference genes

Program Settings