Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C028251.2 Cucumis melo HOM05D005244 ORTHO05D006539 7.7e-64 246.9 117 100.0
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 4.4e-35 151.4 107 73.8
MELO3C010012.2 Cucumis melo HOM05D005244 ORTHO05D006539 1.3e-18 96.7 53 88.7
CsaV3_1G044170 Cucumis sativus L. HOM05D005244 ORTHO05D006539 1.4e-17 93.2 59 79.7
ClCG03G011630 Citrullus lanatus HOM05D005244 ORTHO05D006539 2.7e-16 89.0 47 91.5
Sed0018574 Sechium edule HOM05D005244 ORTHO05D006539 7.8e-16 87.4 59 72.9
Sed0028124 Sechium edule HOM05D005244 ORTHO05D006539 3.0e-15 85.5 59 71.2
CSS0037198 Camellia sinensis var. sinensis HOM05D005244 ORTHO05D006539 1.1e-12 77.0 47 72.3
Actinidia02527 Actinidia chinensis HOM05D005244 ORTHO05D006539 3.1e-12 75.5 54 66.7
TWI34G0889 Tripterygium wilfordii HOM05D005244 ORTHO05D006539 4.0e-12 75.1 47 74.5
Atru.chr7.1024 Acer truncatum HOM05D005244 ORTHO05D006539 5.2e-12 74.7 60 60.0
Prupe.1G001000 Prunus persica HOM05D005244 ORTHO05D006539 5.2e-12 74.7 61 57.4
Ciclev10007431m.g Citrus clementina HOM05D005244 ORTHO05D006539 6.8e-12 74.3 47 74.5
Manes.02G225500 Manihot esculenta HOM05D005244 ORTHO05D006539 6.8e-12 74.3 47 70.2
COL.COLO4_08830 Corchorus olitorius HOM05D005244 ORTHO05D006539 8.9e-12 73.9 54 63.0
MD04G1001000 Malus domestica HOM05D005244 ORTHO05D006539 8.9e-12 73.9 61 57.4
Lju50C34G1 Lonicera japonica HOM05D005244 ORTHO05D006539 1.5e-11 73.2 54 64.8
Actinidia07539 Actinidia chinensis HOM05D005244 ORTHO05D006539 2.0e-11 72.8 47 70.2
RcHm_v2.0_Chr4g0393651 Rosa chinensis HOM05D005244 ORTHO05D006539 2.0e-11 72.8 61 55.7
Haze_21246 Corylus avellana HOM05D005244 ORTHO05D006539 2.6e-11 72.4 60 60.0
MSTRG.26510 Avicennia marina HOM05D005244 ORTHO05D006539 3.4e-11 72.0 47 70.2
Duzib168G0486 Durio zibethinus HOM05D005244 ORTHO05D006539 3.4e-11 72.0 47 68.1
THA.LOC104817833 Tarenaya hassleriana HOM05D005244 ORTHO05D006539 5.8e-11 71.2 55 52.7
Dinv12631 Davidia involucrata HOM05D005244 ORTHO05D006539 7.5e-11 70.9 47 68.1
Migut.L01612 Erythranthe guttata HOM05D005244 ORTHO05D006539 9.9e-11 70.5 47 66.0
Potri.018G150600 Populus trichocarpa HOM05D005244 ORTHO05D006539 9.9e-11 70.5 60 55.0
PGR044G0827 Punica granatum HOM05D005244 ORTHO05D006539 9.9e-11 70.5 56 55.4
QL11p006533 Quercus lobata HOM05D005244 ORTHO05D006539 9.9e-11 70.5 58 58.6
Thecc.09G197300 Theobroma cacao HOM05D005244 ORTHO05D006539 1.3e-10 70.1 47 66.0
Eucgr.C02153 Eucalyptus grandis HOM05D005244 ORTHO05D006539 1.7e-10 69.7 47 63.8
Potri.006G080700 Populus trichocarpa HOM05D005244 ORTHO05D006539 1.7e-10 69.7 47 66.0
CiPaw.07G237900 Carya illinoinensis HOM05D005244 ORTHO05D006539 2.9e-10 68.9 60 60.0
GSVIVG01034254001 Vitis vinifera HOM05D005244 ORTHO05D006539 2.9e-10 68.9 47 68.1
FAN22G0231 Fragaria x ananassa HOM05D005244 ORTHO05D006539 3.7e-10 68.6 63 52.4
QL11p005809 Quercus lobata HOM05D005244 ORTHO05D006539 3.7e-10 68.6 47 66.0
SGA_v2.0_scaffold21G09589 Striga asiatica HOM05D005244 ORTHO05D006539 4.9e-10 68.2 47 61.7
FvH4_4g03800 Fragaria vesca HOM05D005244 ORTHO05D006539 1.1e-09 67.0 63 52.4
FAN12G3076 Fragaria x ananassa HOM05D005244 ORTHO05D006539 1.1e-09 67.0 63 52.4
FAN12G3464 Fragaria x ananassa HOM05D005244 ORTHO05D006539 1.1e-09 67.0 63 52.4
Cpa.g.sc91.76 Carica papaya HOM05D005244 ORTHO05D006539 5.4e-09 64.7 47 63.8
Gohir.D08G027300 Gossypium hirsutum HOM05D005244 ORTHO05D006539 5.4e-09 64.7 58 55.2
Gorai.004G024200 Gossypium raimondii HOM05D005244 ORTHO05D006539 5.4e-09 64.7 58 55.2
Peaxi162Scf01347g00132 Petunia axillaris HOM05D005244 ORTHO05D006539 5.4e-09 64.7 47 57.4
DCAR_020446 Daucus carota HOM05D005244 ORTHO05D006539 9.2e-09 63.9 54 55.6
ECA234G0362 Erigeron canadensis HOM05D005244 ORTHO05D006539 1.2e-08 63.5 60 50.0
Thhalv10012595m.g Eutrema salsugineum HOM05D005244 ORTHO05D006539 1.2e-08 63.5 54 55.6
Lsat_1_v5_gn_5_80020 Lactuca sativa HOM05D005244 ORTHO05D006539 1.2e-08 63.5 60 50.0
SalBow5G4830 Salvia bowleyana HOM05D005244 ORTHO05D006539 1.2e-08 63.5 47 59.6
arahy.Tifrunner.gnm1.ann1.MPB88K Arachis hypogaea HOM05D005244 ORTHO05D006539 1.6e-08 63.2 60 50.0
CAN.G57.4 Capsicum annuum HOM05D005244 ORTHO05D006539 1.6e-08 63.2 47 55.3
Nitab4.5_0000807g0220 Nicotiana tabacum HOM05D005244 ORTHO05D006539 1.6e-08 63.2 47 55.3
Gohir.A08G016900 Gossypium hirsutum HOM05D005244 ORTHO05D006539 2.1e-08 62.8 58 53.4
Sp6g19790 Schrenkiella parvula HOM05D005244 ORTHO05D006539 2.1e-08 62.8 47 57.4
Sc25g0001730 Simmondsia chinensis HOM05D005244 ORTHO05D006539 2.7e-08 62.4 47 55.3
BcaB08g36163 Brassica carinata HOM05D005244 ORTHO05D006539 3.5e-08 62.0 58 53.4
C09p50010 Brassica napus HOM05D005244 ORTHO05D006539 3.5e-08 62.0 58 53.4
BraA10t43621Z Brassica rapa HOM05D005244 ORTHO05D006539 3.5e-08 62.0 58 53.4
arahy.Tifrunner.gnm1.ann1.GU0YFX Arachis hypogaea HOM05D005244 ORTHO05D006539 4.6e-08 61.6 60 48.3
Nitab4.5_0000170g0280 Nicotiana tabacum HOM05D005244 ORTHO05D006539 6.0e-08 61.2 47 55.3
Carub.0008s1866 Capsella rubella HOM05D005244 ORTHO05D006539 7.8e-08 60.8 58 50.0
AL8G34210 Arabidopsis lyrata HOM05D005244 ORTHO05D006539 1.3e-07 60.1 57 50.9
Glyma.01G000900 Glycine max HOM05D005244 ORTHO05D006539 1.3e-07 60.1 59 47.5
Solyc07g042910.4 Solanum lycopersicum HOM05D005244 ORTHO05D006539 1.3e-07 60.1 47 53.2
Sopen07g022510 Solanum pennellii HOM05D005244 ORTHO05D006539 1.3e-07 60.1 47 53.2
BcaC04g19907 Brassica carinata HOM05D005244 ORTHO05D006539 1.7e-07 59.7 58 51.7
BolC9t57854H Brassica oleracea HOM05D005244 ORTHO05D006539 1.7e-07 59.7 58 51.7
AT5G58100 Arabidopsis thaliana HOM05D005244 ORTHO05D006539 3.0e-07 58.9 57 50.9
AUR62020750 Chenopodium quinoa HOM05D005244 ORTHO05D006539 3.0e-07 58.9 47 55.3
AUR62027963 Chenopodium quinoa HOM05D005244 ORTHO05D006539 3.0e-07 58.9 47 55.3
MBI16_g40729_MAGBIO Magnolia biondii HOM05D005244 ORTHO05D006539 3.0e-07 58.9 47 59.6
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 3.9e-07 58.5 47 51.1
Glyma.08G360000 Glycine max HOM05D005244 ORTHO05D006539 3.9e-07 58.5 59 44.1
EL10Ac2g03605 Beta vulgaris HOM05D005244 ORTHO05D006539 5.1e-07 58.2 47 55.3
Nn8g41249 Nelumbo nucifera HOM05D005244 ORTHO05D006539 1.5e-06 56.6 58 51.7
TAR383G0812 Trochodendron aralioides HOM05D005244 ORTHO05D006539 1.5e-06 56.6 58 53.4
Sed0013671 Sechium edule HOM05D005244 ORTHO05D006539 3.3e-06 55.5 60 53.3
PSO063G2947 Papaver somniferum HOM05D005244 ORTHO05D006539 4.3e-06 55.1 54 50.0
PSO170G3502 Papaver somniferum HOM05D005244 ORTHO05D006539 4.3e-06 55.1 54 50.0
TPR.G18623 Trifolium pratense HOM05D005244 ORTHO05D006539 4.3e-06 55.1 57 45.6
MELO3C029383.2 Cucumis melo HOM05D001769 ORTHO05D001695 5.6e-06 54.7 33 72.7
Medtr5g019500 Medicago truncatula HOM05D005244 ORTHO05D006539 5.6e-06 54.7 57 45.6
Lj2g0016843 Lotus japonicus HOM05D005244 ORTHO05D006539 7.3e-06 54.3 57 45.6


User provided reference genes

Program Settings