Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C028228.2 Cucumis melo HOM05D005757 ORTHO05D007090 2.1e-14 80.9 33 100.0
MELO3C023217.2 Cucumis melo HOM05D005757 ORTHO05D007090 3.9e-13 76.6 33 93.9
CsaV3_2G019560 Cucumis sativus L. HOM05D005757 ORTHO05D007090 1.1e-12 75.1 33 90.9
MELO3C027223.2 Cucumis melo HOM05D005757 ORTHO05D007090 2.5e-12 73.9 33 90.9
MELO3C031906.2 Cucumis melo HOM05D005757 ORTHO05D007090 2.5e-12 73.9 33 90.9
MELO3C029498.2 Cucumis melo HOM05D005757 ORTHO05D007090 4.3e-12 73.2 33 87.9
Nn1g08970 Nelumbo nucifera HOM05D005757 ORTHO05D007090 9.6e-12 72.0 33 87.9
MELO3C029389.2 Cucumis melo HOM05D005757 ORTHO05D007090 8.1e-11 68.9 33 84.8
MELO3C035391.2 Cucumis melo HOM05D005757 ORTHO05D007090 8.1e-11 68.9 33 84.8
Sed0027545 Sechium edule HOM05D005757 ORTHO05D007090 8.1e-11 68.9 33 84.8
Medtr3g096710 Medicago truncatula HOM05D005757 ORTHO05D007090 1.1e-10 68.6 33 84.8
Ca_28148_v3 Cicer arietinum L. HOM05D005757 ORTHO05D007090 1.4e-10 68.2 33 84.8
Ca_28522_v3 Cicer arietinum L. HOM05D005757 ORTHO05D007090 1.4e-10 68.2 33 84.8
Lalb_Chr11g0068621 Lupinus albus HOM05D005757 ORTHO05D007090 1.4e-10 68.2 33 84.8
Psat5g060320 Pisum sativum HOM05D005757 ORTHO05D007090 1.4e-10 68.2 33 84.8
TPR.G33548 Trifolium pratense HOM05D005757 ORTHO05D007090 1.4e-10 68.2 33 84.8
GSVIVG01022342001 Vitis vinifera HOM05D005757 ORTHO05D007090 1.8e-10 67.8 33 81.8
arahy.Tifrunner.gnm1.ann1.5W1UEZ Arachis hypogaea HOM05D005757 ORTHO05D007090 2.4e-10 67.4 33 81.8
arahy.Tifrunner.gnm1.ann1.X6R2FG Arachis hypogaea HOM05D005757 ORTHO05D007090 2.4e-10 67.4 33 81.8
Cfa002199 Carpinus fangiana HOM05D005757 ORTHO05D007090 2.4e-10 67.4 33 84.8
Ciclev10001356m.g Citrus clementina HOM05D005757 ORTHO05D007090 2.4e-10 67.4 33 84.8
QL10p041184 Quercus lobata HOM05D005757 ORTHO05D007090 2.4e-10 67.4 33 84.8
QL10p041201 Quercus lobata HOM05D005757 ORTHO05D007090 2.4e-10 67.4 33 84.8
QL10p041477 Quercus lobata HOM05D005757 ORTHO05D007090 2.4e-10 67.4 33 84.8
TAR625G0433 Trochodendron aralioides HOM05D005757 ORTHO05D007090 2.4e-10 67.4 33 84.8
COL.COLO4_35820 Corchorus olitorius HOM05D005757 ORTHO05D007090 3.1e-10 67.0 33 81.8
vmacro18686 Vaccinium macrocarpon HOM05D005757 ORTHO05D007090 4.0e-10 66.6 33 81.8
CiPaw.04G079300 Carya illinoinensis HOM05D005757 ORTHO05D007090 5.2e-10 66.2 33 81.8
VMungo1309G1065 Vigna mungo HOM05D005757 ORTHO05D007090 5.2e-10 66.2 33 81.8
Eucgr.I00121 Eucalyptus grandis HOM05D005757 ORTHO05D007090 6.8e-10 65.9 33 78.8
Prupe.4G275900 Prunus persica HOM05D005757 ORTHO05D007090 6.8e-10 65.9 33 81.8
ECA248G3451 Erigeron canadensis HOM05D005757 ORTHO05D007090 8.9e-10 65.5 33 81.8
Gohir.A05G381400 Gossypium hirsutum HOM05D005757 ORTHO05D007090 8.9e-10 65.5 33 81.8
Gohir.D04G033900 Gossypium hirsutum HOM05D005757 ORTHO05D007090 8.9e-10 65.5 33 81.8
Gorai.012G038200 Gossypium raimondii HOM05D005757 ORTHO05D007090 8.9e-10 65.5 33 81.8
Lsat_1_v5_gn_7_106341 Lactuca sativa HOM05D005757 ORTHO05D007090 8.9e-10 65.5 33 81.8
Manes.12G147700 Manihot esculenta HOM05D005757 ORTHO05D007090 8.9e-10 65.5 33 81.8
RcHm_v2.0_Chr2g0122631 Rosa chinensis HOM05D005757 ORTHO05D007090 8.9e-10 65.5 33 81.8
FvH4_1g24990 Fragaria vesca HOM05D005757 ORTHO05D007090 1.2e-09 65.1 33 81.8
FAN23G0434 Fragaria x ananassa HOM05D005757 ORTHO05D007090 1.2e-09 65.1 33 81.8
FAN28G1123 Fragaria x ananassa HOM05D005757 ORTHO05D007090 1.2e-09 65.1 33 81.8
Glyma.06G156000 Glycine max HOM05D005757 ORTHO05D007090 1.2e-09 65.1 33 78.8
Lj1g0002676 Lotus japonicus HOM05D000058 ORTHO05D000077 1.2e-09 65.1 33 78.8
Lj1g0019812 Lotus japonicus HOM05D005757 ORTHO05D007090 1.2e-09 65.1 33 78.8
Phvul.009G154300 Phaseolus vulgaris HOM05D005757 ORTHO05D007090 1.2e-09 65.1 33 78.8
PGR119G2343 Punica granatum HOM05D005757 ORTHO05D007090 1.2e-09 65.1 33 81.8
Atru.chr4.999 Acer truncatum HOM05D005757 ORTHO05D007090 1.5e-09 64.7 33 78.8
Manes.12G159200 Manihot esculenta HOM05D005757 ORTHO05D007090 2.0e-09 64.3 33 78.8
Rhsim08G0000300 Rhododendron simsii HOM05D005757 ORTHO05D007090 2.0e-09 64.3 33 75.8
CANSAT01G1027 Cannabis sativa HOM05D005757 ORTHO05D007090 2.6e-09 63.9 33 78.8
Cpa.g.sc37.11 Carica papaya HOM05D005757 ORTHO05D007090 2.6e-09 63.9 33 75.8
Migut.H00828 Erythranthe guttata HOM05D005757 ORTHO05D007090 2.6e-09 63.9 33 78.8
HanXRQChr01g0019111 Helianthus annuus HOM05D005757 ORTHO05D007090 2.6e-09 63.9 33 78.8
Lj7C583G3 Lonicera japonica HOM05D005757 ORTHO05D007090 2.6e-09 63.9 33 78.8
TWI75G1840 Tripterygium wilfordii HOM05D005757 ORTHO05D007090 2.6e-09 63.9 33 78.8
FAN26G2810 Fragaria x ananassa HOM05D005757 ORTHO05D007090 3.4e-09 63.5 33 78.8
Glyma.04G210000 Glycine max HOM05D005757 ORTHO05D007090 3.4e-09 63.5 33 75.8
MD00G1091800 Malus domestica HOM05D005757 ORTHO05D007090 3.4e-09 63.5 33 78.8
Actinidia16522 Actinidia chinensis HOM05D005757 ORTHO05D007090 4.4e-09 63.2 33 78.8
Aqoxy6G00314 Aquilegia oxysepala HOM05D005757 ORTHO05D007090 4.4e-09 63.2 33 75.8
MELO3C033631.2 Cucumis melo HOM05D005757 ORTHO05D007090 4.4e-09 63.2 33 81.8
PSO675G6061 Papaver somniferum HOM05D005757 ORTHO05D007090 4.4e-09 63.2 33 72.7
MSTRG.23485 Avicennia marina HOM05D005757 ORTHO05D007090 5.8e-09 62.8 33 75.8
Dinv16327 Davidia involucrata HOM05D005757 ORTHO05D007090 5.8e-09 62.8 33 78.8
CSS0011153 Camellia sinensis var. sinensis HOM05D005757 ORTHO05D007090 7.6e-09 62.4 33 78.8
Thecc.01G137800 Theobroma cacao HOM05D005757 ORTHO05D007090 7.6e-09 62.4 33 75.8
CAN.G186.1 Capsicum annuum HOM05D005757 ORTHO05D007090 9.9e-09 62.0 33 75.8
DCAR_009593 Daucus carota HOM05D005757 ORTHO05D007090 9.9e-09 62.0 33 75.8
Peaxi162Scf00842g00217 Petunia axillaris HOM05D005757 ORTHO05D007090 9.9e-09 62.0 33 75.8
Sabra05G0055900 Salix brachista HOM05D005757 ORTHO05D007090 9.9e-09 62.0 33 75.8
PSO541G2210 Papaver somniferum HOM05D005757 ORTHO05D007090 1.3e-08 61.6 33 69.7
THA.LOC104818419 Tarenaya hassleriana HOM05D005757 ORTHO05D007090 1.3e-08 61.6 33 75.8
Nitab4.5_0010993g0010 Nicotiana tabacum HOM05D005757 ORTHO05D007090 1.7e-08 61.2 33 72.7
Potri.005G068400 Populus trichocarpa HOM05D005757 ORTHO05D007090 1.7e-08 61.2 33 75.8
Solyc04g009430.3 Solanum lycopersicum HOM05D005757 ORTHO05D007090 1.7e-08 61.2 33 75.8
Sopen04g004560 Solanum pennellii HOM05D005757 ORTHO05D007090 1.7e-08 61.2 33 75.8
HPP92_011392 Vanilla planifolia HOM05D005757 ORTHO05D007090 1.7e-08 61.2 33 72.7
Nitab4.5_0004105g0030 Nicotiana tabacum HOM05D005757 ORTHO05D007090 2.2e-08 60.8 33 72.7
SGA_v2.0_scaffold20G08952 Striga asiatica HOM05D005757 ORTHO05D007090 2.2e-08 60.8 33 69.7
Aa31LG3G17760 Aethionema arabicum HOM05D005757 ORTHO05D007090 2.9e-08 60.5 33 75.8
CDE08G1654 Ceratophyllum demersum HOM05D005757 ORTHO05D007090 3.8e-08 60.1 33 69.7
AL6G19620 Arabidopsis lyrata HOM05D005757 ORTHO05D007090 6.4e-08 59.3 33 72.7
AT5G09230 Arabidopsis thaliana HOM05D005757 ORTHO05D007090 6.4e-08 59.3 33 72.7
BcaB05g21563 Brassica carinata HOM05D005757 ORTHO05D007090 6.4e-08 59.3 33 72.7
BraA02t04972Z Brassica rapa HOM05D005757 ORTHO05D007090 6.4e-08 59.3 33 72.7
Carub.0006s0779 Capsella rubella HOM05D005757 ORTHO05D007090 6.4e-08 59.3 33 72.7
CARHR204190 Cardamine hirsuta HOM05D005757 ORTHO05D007090 6.4e-08 59.3 33 72.7
Thhalv10013744m.g Eutrema salsugineum HOM05D005757 ORTHO05D007090 6.4e-08 59.3 33 72.7
QL05p089323 Quercus lobata HOM05D005757 ORTHO05D007090 6.4e-08 59.3 33 78.8
Sp6g34070 Schrenkiella parvula HOM05D005757 ORTHO05D007090 6.4e-08 59.3 33 72.7
PGSC0003DMG400032556 Solanum tuberosum HOM05D005757 ORTHO05D007090 6.4e-08 59.3 33 72.7
C02p03770 Brassica napus HOM05D005757 ORTHO05D007090 8.4e-08 58.9 33 72.7
BolC2t06338H Brassica oleracea HOM05D005757 ORTHO05D007090 8.4e-08 58.9 33 72.7
Oeu037858.1 Olea europaea HOM05D005757 ORTHO05D007090 8.4e-08 58.9 33 66.7
BcaC03g13245 Brassica carinata HOM05D005757 ORTHO05D007090 1.1e-07 58.5 33 69.7
Os12g0179800 Oryza sativa ssp. japonica HOM05D005757 ORTHO05D007090 1.1e-07 58.5 33 69.7
unitig_52.g17615 Utricularia gibba HOM05D005757 ORTHO05D007090 1.1e-07 58.5 33 69.7
Zm00001eb408300 Zea mays HOM05D005757 ORTHO05D007090 1.9e-07 57.8 33 66.7
Cc07_g19340 Coffea canephora HOM05D005757 ORTHO05D007090 2.4e-07 57.4 33 63.6
MBI03_g28480_MAGBIO Magnolia biondii HOM05D005757 ORTHO05D007090 2.4e-07 57.4 33 69.7
SEGI_20574 Sequoiadendron giganteum HOM05D005757 ORTHO05D007090 3.2e-07 57.0 33 63.6
AUR62000523 Chenopodium quinoa HOM05D005757 ORTHO05D007090 4.2e-07 56.6 33 66.7
AUR62006868 Chenopodium quinoa HOM05D005757 ORTHO05D007090 4.2e-07 56.6 33 66.7
ATR0584G010 Amborella trichopoda HOM05D005757 ORTHO05D007090 5.4e-07 56.2 33 66.7
EL10Ac4g09631 Beta vulgaris HOM05D005757 ORTHO05D007090 5.4e-07 56.2 33 66.7
MELO3C028691.2 Cucumis melo HOM05D005757 ORTHO05D007090 2.7e-06 53.9 22 95.5
Mapoly0093s0042 Marchantia polymorpha HOM05D005757 ORTHO05D007090 2.7e-06 53.9 33 60.6
Sc16g0009550 Simmondsia chinensis HOM05D005757 ORTHO05D007090 4.6e-06 53.1 33 60.6
Hund07233 Selenicereus undatus HOM05D005757 ORTHO05D007090 6.0e-06 52.8 33 63.6


User provided reference genes

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