Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C028198.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.9e-99 365.2 178 100.0
MELO3C000141.2 Cucumis melo HOM05D000539 ORTHO05D000592 7.9e-44 181.0 92 96.7
MELO3C000336.2 Cucumis melo HOM05D000539 ORTHO05D000592 9.6e-42 174.1 87 97.7
MELO3C029907.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.2e-37 159.1 92 84.8
MELO3C028628.2 Cucumis melo HOM05D000539 ORTHO05D000592 9.3e-37 157.5 91 89.0
MELO3C035432.2 Cucumis melo HOM05D000539 ORTHO05D000592 9.3e-37 157.5 90 87.8
CsaV3_6G021340 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.6e-36 156.8 91 75.8
CsaV3_UNG238520 Cucumis sativus L. HOM05D000539 ORTHO05D000592 3.5e-36 155.6 113 69.0
CsaV3_7G012630 Cucumis sativus L. HOM05D000539 ORTHO05D000592 6.0e-36 154.8 99 76.8
CsaV3_4G020790 Cucumis sativus L. HOM05D000539 ORTHO05D000592 8.7e-35 151.0 97 75.3
MELO3C030218.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.3e-34 149.1 87 85.1
MELO3C033862.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.9e-32 141.4 82 90.2
CsaV3_3G024980 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.1e-29 134.0 88 72.7
MELO3C035111.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.7e-28 129.4 70 87.1
MELO3C032759.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.1e-28 128.3 89 71.9
MELO3C027967.2 Cucumis melo HOM05D000539 ORTHO05D000592 7.7e-23 111.3 91 58.2
MELO3C032093.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.0e-22 108.6 94 54.3
MELO3C035043.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.2e-21 105.5 51 98.0
MELO3C029479.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.6e-20 103.6 89 53.9
Sed0002111 Sechium edule HOM05D000539 ORTHO05D000592 3.6e-20 102.4 93 54.8
Sed0002737 Sechium edule HOM05D000539 ORTHO05D000592 1.4e-19 100.5 79 58.2
MELO3C028463.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.9e-19 99.0 47 97.9
MELO3C027923.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.0e-18 96.7 51 92.2
CsaV3_6G018870 Cucumis sativus L. HOM05D000539 ORTHO05D000592 4.4e-18 95.5 51 86.3
Sed0012130 Sechium edule HOM05D000539 ORTHO05D000592 4.4e-18 95.5 82 52.4
MELO3C029067.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.7e-18 95.1 79 55.7
MELO3C030143.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.7e-18 95.1 122 42.6
MELO3C033385.2 Cucumis melo HOM05D000539 ORTHO05D000592 9.7e-18 94.4 89 52.8
CsaV3_3G021520 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.3e-17 94.0 66 69.7
MELO3C029948.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.2e-17 93.2 47 93.6
Sed0020810 Sechium edule HOM05D000539 ORTHO05D000592 4.8e-17 92.0 120 44.2
CsaV3_UNG030160 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.1e-16 90.9 63 69.8
CsaV3_1G045370 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.4e-16 90.5 51 82.4
MELO3C034092.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.8e-16 90.1 70 57.1
MELO3C034354.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.5e-15 87.0 48 85.4
MELO3C029528.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.0e-14 84.3 64 56.2
ClCG01G010170 Citrullus lanatus HOM05D000539 ORTHO05D000592 2.9e-14 82.8 64 62.5
MELO3C027571.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.2e-12 77.4 63 54.0
MELO3C029690.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.6e-12 77.0 57 57.9
MELO3C031428.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.0e-11 74.3 41 78.0
MELO3C033953.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.3e-11 73.2 50 74.0
MELO3C031383.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.9e-11 72.4 35 97.1
MELO3C028519.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.1e-10 70.9 57 61.4
MELO3C032706.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.5e-10 70.5 57 63.2
MELO3C029090.2 Cucumis melo HOM05D008781 ORTHO05D000592 5.7e-10 68.6 34 94.1
ClCG01G012290 Citrullus lanatus HOM05D000539 ORTHO05D000233 9.7e-10 67.8 73 50.7
MELO3C034371.2 Cucumis melo HOM05D000539 ORTHO05D000233 1.3e-09 67.4 58 58.6
FAN10G4183 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.3e-09 67.4 92 35.9
FAN10G2166 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.2e-09 66.6 80 37.5
MELO3C032570.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.8e-09 66.2 34 91.2
MELO3C030038.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.8e-09 65.5 87 46.0
MELO3C033118.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.8e-09 65.5 78 38.5
MELO3C032017.2 Cucumis melo HOM05D000539 ORTHO05D000592 8.2e-09 64.7 79 38.0
FAN11G2856 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.2e-09 64.7 115 28.7
MELO3C028785.2 Cucumis melo HOM05D000539 ORTHO05D000233 1.1e-08 64.3 78 38.5
FvH4_3g21081 Fragaria vesca HOM05D000539 ORTHO05D000592 1.1e-08 64.3 80 35.0
MELO3C031391.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.4e-08 63.9 47 55.3
MELO3C033325.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.4e-08 63.9 78 38.5
FvH4_6g20174 Fragaria vesca HOM05D000539 ORTHO05D000592 1.4e-08 63.9 80 36.2
RcHm_v2.0_Chr4g0417951 Rosa chinensis HOM05D000539 ORTHO05D000592 1.4e-08 63.9 87 41.4
MELO3C033645.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.8e-08 63.5 78 38.5
MELO3C034178.2 Cucumis melo HOM05D000539 ORTHO05D000233 1.8e-08 63.5 31 93.5
MELO3C034786.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.4e-08 63.2 78 37.2
MELO3C030592.2 Cucumis melo HOM05D000539 ORTHO05D000233 3.1e-08 62.8 78 37.2
FAN14G5321 Fragaria x ananassa HOM05D000539 ORTHO05D000233 3.1e-08 62.8 80 35.0
RcHm_v2.0_Chr1g0318241 Rosa chinensis HOM05D000539 ORTHO05D000592 3.1e-08 62.8 83 42.2
MELO3C031217.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.1e-08 62.4 43 69.8
FvH4_7g02151 Fragaria vesca HOM05D000539 ORTHO05D000592 4.1e-08 62.4 80 33.8
FAN08G0188 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.1e-08 62.4 107 32.7
RcHm_v2.0_Chr3g0482291 Rosa chinensis HOM05D000539 ORTHO05D000592 4.1e-08 62.4 87 40.2
RcHm_v2.0_Chr7g0240601 Rosa chinensis HOM05D000539 ORTHO05D000592 4.1e-08 62.4 87 40.2
FAN02G3402 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.3e-08 62.0 79 34.2
RcHm_v2.0_Chr5g0020841 Rosa chinensis HOM05D000539 ORTHO05D000592 7.0e-08 61.6 81 34.6
MELO3C028643.2 Cucumis melo HOM05D000539 ORTHO05D000592 9.1e-08 61.2 78 37.2
FvH4_4g16177 Fragaria vesca HOM05D000539 ORTHO05D000592 9.1e-08 61.2 80 35.0
RcHm_v2.0_Chr3g0471941 Rosa chinensis HOM05D000539 ORTHO05D000592 9.1e-08 61.2 81 35.8
CsaV3_5G020430 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.2e-07 60.8 55 58.2
FvH4_3g26441 Fragaria vesca HOM05D000539 ORTHO05D000592 1.6e-07 60.5 81 35.8
FAN22G0206 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.6e-07 60.5 81 35.8
FAN28G2943 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.6e-07 60.5 81 35.8
RhsimUnG0164900 Rhododendron simsii HOM05D000539 ORTHO05D000233 1.6e-07 60.5 131 29.8
Sed0007296 Sechium edule HOM05D000539 ORTHO05D000592 1.6e-07 60.5 123 34.1
Sed0019768 Sechium edule HOM05D000539 ORTHO05D000592 1.6e-07 60.5 95 40.0
FAN02G3652 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.0e-07 60.1 80 33.8
RcHm_v2.0_Chr2g0095661 Rosa chinensis HOM05D000539 ORTHO05D000592 2.0e-07 60.1 81 37.0
Sed0019036 Sechium edule HOM05D000539 ORTHO05D000592 2.0e-07 60.1 95 41.1
FvH4_5g25800 Fragaria vesca HOM05D000539 ORTHO05D000592 2.6e-07 59.7 81 34.6
RcHm_v2.0_Chr4g0390571 Rosa chinensis HOM05D000539 ORTHO05D000592 2.6e-07 59.7 83 41.0
FAN18G0712 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.5e-07 59.3 81 34.6
Prupe.1G130900 Prunus persica HOM05D000539 ORTHO05D000233 5.9e-07 58.5 79 36.7
FvH4_5g31540 Fragaria vesca HOM05D000539 ORTHO05D000592 7.7e-07 58.2 63 38.1
MELO3C028520.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.0e-06 57.8 64 39.1
FAN18G4025 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.0e-06 57.8 81 34.6
RcHm_v2.0_Chr4g0391241 Rosa chinensis HOM05D000539 ORTHO05D000592 1.0e-06 57.8 81 34.6
Prupe.3G107500 Prunus persica HOM05D000539 ORTHO05D000233 1.3e-06 57.4 79 35.4
RcHm_v2.0_Chr1g0364031 Rosa chinensis HOM05D000539 ORTHO05D000233 1.3e-06 57.4 81 34.6
RcHm_v2.0_Chr5g0023941 Rosa chinensis HOM05D000539 ORTHO05D000592 1.3e-06 57.4 81 34.6
MELO3C034533.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.7e-06 57.0 84 34.5
FvH4_4g09070 Fragaria vesca HOM05D000539 ORTHO05D000592 1.7e-06 57.0 65 35.4
Prupe.1G193900 Prunus persica HOM05D000539 ORTHO05D000592 1.7e-06 57.0 79 35.4
Rhsim02G0146100 Rhododendron simsii HOM05D000539 ORTHO05D000233 1.7e-06 57.0 80 37.5
FAN22G1432 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.2e-06 56.6 80 33.8
Prupe.5G040600 Prunus persica HOM05D000539 ORTHO05D000592 2.2e-06 56.6 62 41.9
Rhsim01G0018900 Rhododendron simsii HOM05D000539 ORTHO05D000233 2.2e-06 56.6 90 33.3
Rhsim10G0157200 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.2e-06 56.6 80 36.2
RcHm_v2.0_Chr2g0108851 Rosa chinensis HOM05D000539 ORTHO05D000592 2.2e-06 56.6 153 26.8
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 2.2e-06 56.6 153 26.8
CsaV3_3G021730 Cucumis sativus L. HOM05D000539 ORTHO05D000592 2.9e-06 56.2 78 30.8
CsaV3_6G015720 Cucumis sativus L. HOM05D000539 ORTHO05D000592 2.9e-06 56.2 78 30.8
FAN14G5053 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.9e-06 56.2 80 31.2
Prupe.6G137200 Prunus persica HOM05D000539 ORTHO05D000592 2.9e-06 56.2 62 41.9
MELO3C027653.2 Cucumis melo HOM05D001963 ORTHO05D001863 3.8e-06 55.8 64 39.1
MELO3C030857.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.8e-06 55.8 43 62.8
CsaV3_4G007110 Cucumis sativus L. HOM05D000539 ORTHO05D000233 3.8e-06 55.8 73 42.5
Rhsim08G0058700 Rhododendron simsii HOM05D000539 ORTHO05D000592 3.8e-06 55.8 93 34.4
Atru.chr1.738 Acer truncatum HOM05D000539 ORTHO05D000592 5.0e-06 55.5 138 23.9
MELO3C035055.2 Cucumis melo HOM05D000004 ORTHO05D000002 5.0e-06 55.5 64 39.1
FAN28G0205 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.0e-06 55.5 81 33.3
Prupe.1G174000 Prunus persica HOM05D000539 ORTHO05D000592 5.0e-06 55.5 62 40.3
Prupe.1G185000 Prunus persica HOM05D000539 ORTHO05D000592 5.0e-06 55.5 79 31.6
Prupe.1G397800 Prunus persica HOM05D000539 ORTHO05D000592 5.0e-06 55.5 81 32.1
RcHm_v2.0_Chr5g0079561 Rosa chinensis HOM05D000539 ORTHO05D000592 5.0e-06 55.5 81 33.3
SHI11655 Sapria himalayana HOM05D000616 ORTHO05D000233 5.0e-06 55.5 82 31.7
FAN05G1979 Fragaria x ananassa HOM05D000539 ORTHO05D000592 6.5e-06 55.1 80 30.0
FAN05G4673 Fragaria x ananassa HOM05D000539 ORTHO05D000592 6.5e-06 55.1 80 30.0
FAN12G0188 Fragaria x ananassa HOM05D000539 ORTHO05D000592 6.5e-06 55.1 65 33.8
Prupe.1G199400 Prunus persica HOM05D000539 ORTHO05D000592 6.5e-06 55.1 81 32.1
Prupe.1G202700 Prunus persica HOM05D000539 ORTHO05D000592 6.5e-06 55.1 81 32.1
Prupe.1G237300 Prunus persica HOM05D000539 ORTHO05D000592 6.5e-06 55.1 81 32.1
Prupe.2G089500 Prunus persica HOM05D000539 ORTHO05D000592 6.5e-06 55.1 81 32.1
Prupe.2G094600 Prunus persica HOM05D000539 ORTHO05D000592 6.5e-06 55.1 81 32.1
Prupe.2G155700 Prunus persica HOM05D000539 ORTHO05D000233 6.5e-06 55.1 81 32.1
Prupe.3G118800 Prunus persica HOM05D000539 ORTHO05D000592 6.5e-06 55.1 81 32.1
Prupe.6G180100 Prunus persica HOM05D000539 ORTHO05D000592 6.5e-06 55.1 81 32.1
Prupe.6G200000 Prunus persica HOM05D000539 ORTHO05D000592 6.5e-06 55.1 81 32.1
Prupe.7G033400 Prunus persica HOM05D000539 ORTHO05D000592 6.5e-06 55.1 81 32.1
Prupe.8G047800 Prunus persica HOM05D000539 ORTHO05D000592 6.5e-06 55.1 81 32.1
RcHm_v2.0_Chr1g0325001 Rosa chinensis HOM05D000539 ORTHO05D000592 6.5e-06 55.1 68 44.1
SGA_v2.0_scaffold191G40501 Striga asiatica HOM05D002644 ORTHO05D003267 6.5e-06 55.1 93 33.3
MELO3C035383.2 Cucumis melo HOM05D000107 ORTHO05D000592 8.5e-06 54.7 28 92.9
FAN05G5337 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.5e-06 54.7 80 30.0
FAN06G2612 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.5e-06 54.7 80 30.0
FAN07G2556 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.5e-06 54.7 80 30.0
FAN09G4698 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.5e-06 54.7 80 30.0
FAN10G3314 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.5e-06 54.7 80 30.0
FAN23G1524 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.5e-06 54.7 80 30.0
FAN28G2269 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.5e-06 54.7 80 30.0
FAN28G2905 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.5e-06 54.7 80 30.0
Prupe.1G173700 Prunus persica HOM05D000539 ORTHO05D000592 8.5e-06 54.7 81 32.1
Prupe.2G062000 Prunus persica HOM05D000539 ORTHO05D000592 8.5e-06 54.7 79 31.6
Prupe.2G090400 Prunus persica HOM05D000539 ORTHO05D000592 8.5e-06 54.7 81 32.1
Prupe.2G157500 Prunus persica HOM05D000539 ORTHO05D000592 8.5e-06 54.7 81 32.1
Prupe.3G103000 Prunus persica HOM05D000539 ORTHO05D000592 8.5e-06 54.7 79 31.6
Prupe.5G023300 Prunus persica HOM05D000539 ORTHO05D000592 8.5e-06 54.7 79 31.6
Prupe.6G142900 Prunus persica HOM05D000539 ORTHO05D000592 8.5e-06 54.7 79 31.6
Prupe.7G029100 Prunus persica HOM05D000539 ORTHO05D000592 8.5e-06 54.7 81 32.1
RcHm_v2.0_Chr1g0316591 Rosa chinensis HOM05D000539 ORTHO05D000592 8.5e-06 54.7 143 27.3
SHI15885 Sapria himalayana HOM05D000616 ORTHO05D000233 8.5e-06 54.7 82 32.9


User provided reference genes

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