Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C028143.2 Cucumis melo HOM05D000015 ORTHO05D170448 4.1e-34 147.5 75 100.0
MELO3C001601.2 Cucumis melo HOM05D000015 ORTHO05D167805 3.4e-33 144.4 75 98.7
CsaV3_3G046020 Cucumis sativus L. HOM05D000015 ORTHO05D002445 1.9e-31 138.7 75 93.3
ClCG05G015540 Citrullus lanatus HOM05D000015 ORTHO05D002445 6.7e-29 130.2 75 86.7
Sed0027143 Sechium edule HOM05D000015 ORTHO05D002445 3.5e-25 117.9 75 80.0
MELO3C001303.2 Cucumis melo HOM05D000015 ORTHO05D000111 7.4e-20 100.1 57 87.7
Manes.18G012160 Manihot esculenta HOM05D000015 ORTHO05D002445 1.5e-12 75.9 76 51.3
Thecc.08G048700 Theobroma cacao HOM05D000015 ORTHO05D002445 9.7e-12 73.2 76 51.3
Nitab4.5_0000337g0020 Nicotiana tabacum HOM05D000015 ORTHO05D002445 1.3e-11 72.8 76 52.6
Eucgr.F01673 Eucalyptus grandis HOM05D000015 ORTHO05D002445 2.8e-11 71.6 76 48.7
Peaxi162Scf00672g00515 Petunia axillaris HOM05D000015 ORTHO05D002445 2.8e-11 71.6 76 48.7
CANSAT25G3028 Cannabis sativa HOM05D000015 ORTHO05D002445 3.7e-11 71.2 76 48.7
COL.COLO4_26110 Corchorus olitorius HOM05D000015 ORTHO05D002445 6.3e-11 70.5 76 48.7
Gohir.D05G187400 Gossypium hirsutum HOM05D000015 ORTHO05D002445 6.3e-11 70.5 76 50.0
Gorai.009G192600 Gossypium raimondii HOM05D000015 ORTHO05D002445 6.3e-11 70.5 76 50.0
Nitab4.5_0008247g0020 Nicotiana tabacum HOM05D000015 ORTHO05D002445 6.3e-11 70.5 76 53.9
Cc10_g01350 Coffea canephora HOM05D000015 ORTHO05D002445 8.3e-11 70.1 76 47.4
Gorai.010G002000 Gossypium raimondii HOM05D000015 ORTHO05D002445 1.1e-10 69.7 76 51.3
Gohir.A06G001800 Gossypium hirsutum HOM05D000015 ORTHO05D002445 1.4e-10 69.3 76 51.3
Duzib093G2063 Durio zibethinus HOM05D000015 ORTHO05D002445 1.8e-10 68.9 76 50.0
Cpa.g.sc26.288 Carica papaya HOM05D000015 ORTHO05D002445 2.4e-10 68.6 75 46.7
Gohir.A05G184600 Gossypium hirsutum HOM05D000015 ORTHO05D002445 4.1e-10 67.8 76 48.7
Nitab4.5_0008954g0040 Nicotiana tabacum HOM05D000015 ORTHO05D002445 4.1e-10 67.8 76 50.0
Ciclev10000339m.g Citrus clementina HOM05D000015 ORTHO05D002445 9.1e-10 66.6 72 51.4
Nitab4.5_0001647g0120 Nicotiana tabacum HOM05D000015 ORTHO05D002445 9.1e-10 66.6 76 46.1
Peaxi162Scf00860g00429 Petunia axillaris HOM05D000015 ORTHO05D002445 9.1e-10 66.6 78 47.4
Sc11g0003200 Simmondsia chinensis HOM05D000015 ORTHO05D002445 1.6e-09 65.9 76 44.7
Aa31LG7G4570 Aethionema arabicum HOM05D000015 ORTHO05D002445 2.7e-09 65.1 77 49.4
GSVIVG01009968001 Vitis vinifera HOM05D000015 ORTHO05D002445 2.7e-09 65.1 76 43.4
Solyc04g081810.4 Solanum lycopersicum HOM05D000015 ORTHO05D002445 3.5e-09 64.7 76 44.7
Sopen04g035440 Solanum pennellii HOM05D000015 ORTHO05D002445 3.5e-09 64.7 76 44.7
MSTRG.1167 Avicennia marina HOM05D000015 ORTHO05D002445 5.9e-09 63.9 76 42.1
A06p16300 Brassica napus HOM05D000015 ORTHO05D002445 5.9e-09 63.9 76 46.1
BraA06t24732Z Brassica rapa HOM05D000015 ORTHO05D002445 5.9e-09 63.9 76 46.1
Sabra02G0014900 Salix brachista HOM05D000015 ORTHO05D002445 5.9e-09 63.9 76 44.7
BcaC05g25918 Brassica carinata HOM05D000015 ORTHO05D002445 1.0e-08 63.2 76 46.1
C05p18680 Brassica napus HOM05D000015 ORTHO05D002445 1.0e-08 63.2 76 46.1
BolC5t30576H Brassica oleracea HOM05D000015 ORTHO05D002445 1.0e-08 63.2 76 46.1
CAN.G311.56 Capsicum annuum HOM05D000015 ORTHO05D002445 1.0e-08 63.2 76 42.1
Lj4C20G5 Lonicera japonica HOM05D000015 ORTHO05D002445 1.0e-08 63.2 80 41.2
SHI08041 Sapria himalayana HOM05D000015 ORTHO05D002445 1.0e-08 63.2 76 43.4
AL1G33000 Arabidopsis lyrata HOM05D000015 ORTHO05D002445 1.3e-08 62.8 77 46.8
CARHR020670 Cardamine hirsuta HOM05D000015 ORTHO05D002445 1.3e-08 62.8 77 45.5
Nn5g30800 Nelumbo nucifera HOM05D000015 ORTHO05D002445 1.3e-08 62.8 76 46.1
Potri.002G018600 Populus trichocarpa HOM05D000015 ORTHO05D002445 1.7e-08 62.4 76 44.7
THA.LOC104811432 Tarenaya hassleriana HOM05D000015 ORTHO05D002445 1.7e-08 62.4 77 46.8
TAR628G1197 Trochodendron aralioides HOM05D000015 ORTHO05D002445 1.7e-08 62.4 72 48.6
TWI56G0522 Tripterygium wilfordii HOM05D000015 ORTHO05D002445 2.2e-08 62.0 78 44.9
AT1G20160 Arabidopsis thaliana HOM05D000015 ORTHO05D002445 2.9e-08 61.6 77 46.8
QL02p012414 Quercus lobata HOM05D000015 ORTHO05D002445 2.9e-08 61.6 76 44.7
AT1G20150 Arabidopsis thaliana HOM05D000015 ORTHO05D002445 3.8e-08 61.2 78 42.3
BcaB07g32029 Brassica carinata HOM05D000015 ORTHO05D002445 3.8e-08 61.2 76 43.4
PGSC0003DMG400009947 Solanum tuberosum HOM05D000015 ORTHO05D002445 3.8e-08 61.2 76 40.8
Ah.11g040020 Amaranthus hybridus HOM05D000015 ORTHO05D002445 5.0e-08 60.8 78 42.3
Actinidia15448 Actinidia chinensis HOM05D000015 ORTHO05D002445 6.5e-08 60.5 74 40.5
Carub.0001s1970 Capsella rubella HOM05D000015 ORTHO05D002445 6.5e-08 60.5 77 45.5
Thhalv10006877m.g Eutrema salsugineum HOM05D000015 ORTHO05D002445 6.5e-08 60.5 77 46.8
CiPaw.07G145500 Carya illinoinensis HOM05D000015 ORTHO05D002445 8.5e-08 60.1 76 40.8
TWI56G0067 Tripterygium wilfordii HOM05D000015 ORTHO05D002445 8.5e-08 60.1 78 42.3
VMungo1309G2142 Vigna mungo HOM05D000015 ORTHO05D002445 1.1e-07 59.7 79 46.8
AUR62013918 Chenopodium quinoa HOM05D000015 ORTHO05D002445 1.5e-07 59.3 76 42.1
TPR.G33756 Trifolium pratense HOM05D000015 ORTHO05D003512 1.5e-07 59.3 75 38.7
AUR62018273 Chenopodium quinoa HOM05D000015 ORTHO05D002445 1.9e-07 58.9 76 40.8
Haze_22675 Corylus avellana HOM05D000015 ORTHO05D002445 1.9e-07 58.9 76 42.1
Sp1g17940 Schrenkiella parvula HOM05D000015 ORTHO05D002445 1.9e-07 58.9 76 42.1
CARHR020660 Cardamine hirsuta HOM05D000015 ORTHO05D002445 3.2e-07 58.2 78 43.6
FAN20G0064 Fragaria x ananassa HOM05D000015 ORTHO05D002445 3.2e-07 58.2 77 44.2
Peaxi162Scf00672g00611 Petunia axillaris HOM05D000015 ORTHO05D002445 3.2e-07 58.2 74 45.9
PGR083G2729 Punica granatum HOM05D000015 ORTHO05D002445 3.2e-07 58.2 74 39.2
EL10Ac1g02140 Beta vulgaris HOM05D000015 ORTHO05D002445 4.2e-07 57.8 76 39.5
HanXRQChr14g0443741 Helianthus annuus HOM05D000015 ORTHO05D003512 4.2e-07 57.8 75 37.3
Medtr5g025010 Medicago truncatula HOM05D000015 ORTHO05D003512 4.2e-07 57.8 75 37.3
SalBow7G3429 Salvia bowleyana HOM05D000015 ORTHO05D002445 4.2e-07 57.8 76 38.2
Eucgr.J02574 Eucalyptus grandis HOM05D000015 ORTHO05D003512 7.2e-07 57.0 78 41.0
FvH4_2g38090 Fragaria vesca HOM05D000015 ORTHO05D002445 7.2e-07 57.0 77 44.2
FAN15G2061 Fragaria x ananassa HOM05D000015 ORTHO05D002445 7.2e-07 57.0 77 45.5
Glyma.06G022500 Glycine max HOM05D000015 ORTHO05D002445 7.2e-07 57.0 76 40.8
Phvul.009G018500 Phaseolus vulgaris HOM05D000015 ORTHO05D002445 7.2e-07 57.0 76 44.7
TAR376G0718 Trochodendron aralioides HOM05D000015 ORTHO05D002445 7.2e-07 57.0 76 44.7
Lsat_1_v5_gn_2_72921 Lactuca sativa HOM05D000015 ORTHO05D003512 9.4e-07 56.6 75 37.3
Thecc.01G000900 Theobroma cacao HOM05D000015 ORTHO05D003512 9.4e-07 56.6 71 38.0
Ca_25040_v3 Cicer arietinum L. HOM05D000015 ORTHO05D003512 1.2e-06 56.2 75 34.7
Glyma.01G155900 Glycine max HOM05D000015 ORTHO05D003512 1.2e-06 56.2 73 37.0
Glyma.04G022300 Glycine max HOM05D000015 ORTHO05D002445 1.2e-06 56.2 76 42.1
Glyma.11G088900 Glycine max HOM05D000015 ORTHO05D003512 1.2e-06 56.2 75 36.0
Phvul.009G018600 Phaseolus vulgaris HOM05D000015 ORTHO05D002445 1.2e-06 56.2 79 44.3
Potri.011G146300 Populus trichocarpa HOM05D000015 ORTHO05D003512 1.2e-06 56.2 69 40.6
AL1G32990 Arabidopsis lyrata HOM05D000015 ORTHO05D002445 1.6e-06 55.8 78 41.0
PSO421G0736 Papaver somniferum HOM05D000015 ORTHO05D000249 1.6e-06 55.8 73 34.2
Solyc08g007670.1 Solanum lycopersicum HOM05D000015 ORTHO05D000803 1.6e-06 55.8 78 39.7
Sopen08g003620 Solanum pennellii HOM05D000015 ORTHO05D000803 1.6e-06 55.8 78 39.7
Cfa013987 Carpinus fangiana HOM05D000015 ORTHO05D002445 2.1e-06 55.5 76 40.8
Lj1g0012160 Lotus japonicus HOM05D000015 ORTHO05D002445 2.1e-06 55.5 76 44.7
SGA_v2.0_scaffold145G36077 Striga asiatica HOM05D000015 ORTHO05D002445 2.1e-06 55.5 76 36.8
ATR0180G034 Amborella trichopoda HOM05D000015 ORTHO05D002445 2.7e-06 55.1 76 38.2
arahy.Tifrunner.gnm1.ann1.KJ02D9 Arachis hypogaea HOM05D000015 ORTHO05D003512 2.7e-06 55.1 73 32.9
arahy.Tifrunner.gnm1.ann1.RG5V6R Arachis hypogaea HOM05D000015 ORTHO05D003512 2.7e-06 55.1 73 32.9
HanXRQChr06g0185121 Helianthus annuus HOM05D000015 ORTHO05D002445 2.7e-06 55.1 75 37.3
Nitab4.5_0010979g0030 Nicotiana tabacum HOM05D000015 ORTHO05D002445 2.7e-06 55.1 63 49.2
PGSC0003DMG400009414 Solanum tuberosum HOM05D000015 ORTHO05D003512 3.6e-06 54.7 78 37.2
BcaNung03350 Brassica carinata HOM05D000015 ORTHO05D002445 4.7e-06 54.3 78 39.7
C07p23200 Brassica napus HOM05D000015 ORTHO05D002445 4.7e-06 54.3 78 39.7
BolC7t42856H Brassica oleracea HOM05D000015 ORTHO05D002445 4.7e-06 54.3 78 39.7
Nitab4.5_0012518g0020 Nicotiana tabacum HOM05D000015 ORTHO05D003512 4.7e-06 54.3 78 38.5
PSO700G0181 Papaver somniferum HOM05D000015 ORTHO05D002445 4.7e-06 54.3 76 39.5
Potri.001G455800 Populus trichocarpa HOM05D000015 ORTHO05D003512 4.7e-06 54.3 75 36.0
PGSC0003DMG400012491 Solanum tuberosum HOM05D000015 ORTHO05D000803 4.7e-06 54.3 78 38.5
CAN.G1394.19 Capsicum annuum HOM05D000015 ORTHO05D000803 6.1e-06 53.9 78 39.7
Cpa.g.sc6.377 Carica papaya HOM05D000015 ORTHO05D003512 6.1e-06 53.9 75 34.7
ECA238G2143 Erigeron canadensis HOM05D000015 ORTHO05D003512 6.1e-06 53.9 75 34.7
Lalb_Chr05g0215001 Lupinus albus HOM05D000015 ORTHO05D003512 6.1e-06 53.9 75 34.7
Lalb_Chr09g0334471 Lupinus albus HOM05D000015 ORTHO05D003512 6.1e-06 53.9 75 34.7
Psat2g147120 Pisum sativum HOM05D000015 ORTHO05D003512 6.1e-06 53.9 75 34.7
Sabra05G0188300 Salix brachista HOM05D000015 ORTHO05D002445 6.1e-06 53.9 76 39.5
BcaB03g14331 Brassica carinata HOM05D000015 ORTHO05D002445 8.0e-06 53.5 78 39.7
A07p15910 Brassica napus HOM05D000015 ORTHO05D002445 8.0e-06 53.5 78 39.7
BraA07t29321Z Brassica rapa HOM05D000015 ORTHO05D002445 8.0e-06 53.5 78 39.7
CSS0000273 Camellia sinensis var. sinensis HOM05D000015 ORTHO05D002445 8.0e-06 53.5 73 39.7
CAN.G1394.20 Capsicum annuum HOM05D000015 ORTHO05D000803 8.0e-06 53.5 77 36.4
Cc07_g12340 Coffea canephora HOM05D000015 ORTHO05D003512 8.0e-06 53.5 78 34.6
Lj2g0014625 Lotus japonicus HOM05D000015 ORTHO05D003512 8.0e-06 53.5 73 35.6
Medtr8g072440 Medicago truncatula HOM05D000015 ORTHO05D003512 8.0e-06 53.5 75 34.7
Psat0s3372g0040 Pisum sativum HOM05D000015 ORTHO05D003512 8.0e-06 53.5 75 34.7
Prupe.1G361300 Prunus persica HOM05D000015 ORTHO05D002445 8.0e-06 53.5 72 41.7


User provided reference genes

Program Settings