Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.8e-123 445.3 224 100.0
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 7.3e-47 191.4 152 73.0
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.3e-46 190.7 152 73.0
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 1.2e-41 174.1 152 69.7
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 4.0e-37 159.1 152 61.8
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 2.5e-26 123.2 150 50.7
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 2.7e-25 119.8 151 51.0
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 2.7e-25 119.8 151 51.0
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 6.0e-25 118.6 152 50.7
MELO3C030784.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.3e-24 116.7 64 95.3
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 3.9e-24 115.9 152 49.3
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 1.9e-23 113.6 155 44.5
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 3.3e-23 112.8 151 48.3
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 4.3e-23 112.5 168 41.1
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 4.3e-23 112.5 152 49.3
MELO3C028433.2 Cucumis melo HOM05D004277 ORTHO05D005148 3.7e-22 109.4 76 81.6
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 1.1e-21 107.8 149 45.6
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 1.1e-21 107.8 148 48.6
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 1.8e-21 107.1 152 45.4
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 1.8e-21 107.1 151 47.7
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 2.4e-21 106.7 148 47.3
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 4.1e-21 105.9 139 48.9
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 1.2e-20 104.4 148 43.9
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 1.2e-20 104.4 127 49.6
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 1.2e-20 104.4 158 42.4
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 1.5e-20 104.0 148 46.6
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.5e-20 104.0 148 45.9
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 1.5e-20 104.0 130 47.7
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 2.0e-20 103.6 131 49.6
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 2.0e-20 103.6 151 45.7
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 2.0e-20 103.6 148 45.9
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 2.0e-20 103.6 148 46.6
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 2.6e-20 103.2 123 51.2
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 2.6e-20 103.2 152 48.0
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 3.4e-20 102.8 143 46.2
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 3.4e-20 102.8 127 50.4
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 3.4e-20 102.8 124 51.6
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 4.5e-20 102.4 127 48.8
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 7.6e-20 101.7 151 45.7
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 7.6e-20 101.7 123 48.8
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 7.6e-20 101.7 127 47.2
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 1.0e-19 101.3 134 48.5
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 1.0e-19 101.3 151 46.4
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 1.0e-19 101.3 127 49.6
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 1.3e-19 100.9 146 46.6
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 1.7e-19 100.5 120 50.8
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 1.7e-19 100.5 152 44.1
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 1.7e-19 100.5 152 44.1
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 2.2e-19 100.1 144 44.4
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 2.9e-19 99.8 124 50.0
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 2.9e-19 99.8 127 48.8
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 2.9e-19 99.8 149 44.3
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 3.8e-19 99.4 143 45.5
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 3.8e-19 99.4 152 44.1
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 5.0e-19 99.0 151 45.0
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 6.5e-19 98.6 124 49.2
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 6.5e-19 98.6 148 39.9
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 8.5e-19 98.2 146 44.5
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 8.5e-19 98.2 127 47.2
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 1.4e-18 97.4 127 48.8
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 1.4e-18 97.4 127 48.8
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 1.4e-18 97.4 154 41.6
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 4.2e-18 95.9 124 48.4
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 4.2e-18 95.9 124 50.0
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 5.5e-18 95.5 124 48.4
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 5.5e-18 95.5 124 48.4
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 5.5e-18 95.5 124 48.4
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 9.3e-18 94.7 120 49.2
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 9.3e-18 94.7 123 48.8
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 9.3e-18 94.7 124 47.6
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 1.2e-17 94.4 147 43.5
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 1.6e-17 94.0 123 50.4
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.1e-17 93.6 88 61.4
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 2.7e-17 93.2 156 41.0
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 2.7e-17 93.2 151 43.7
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 4.6e-17 92.4 133 42.1
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 6.1e-17 92.0 115 48.7
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 6.1e-17 92.0 142 45.1
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 6.1e-17 92.0 152 43.4
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 6.1e-17 92.0 152 43.4
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 1.3e-16 90.9 142 45.1
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 1.8e-16 90.5 130 46.2
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 2.3e-16 90.1 158 40.5
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 3.0e-16 89.7 130 46.2
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 3.9e-16 89.4 114 49.1
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 3.9e-16 89.4 173 41.0
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 5.1e-16 89.0 123 43.9
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 8.7e-16 88.2 144 43.1
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 1.1e-15 87.8 123 43.1
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.5e-15 87.4 127 45.7
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 1.5e-15 87.4 120 44.2
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.9e-15 87.0 196 37.2
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 7.7e-12 75.1 120 40.0
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 1.0e-11 74.7 90 50.0
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.1e-10 71.2 88 47.7
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 2.5e-10 70.1 87 47.1
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 4.2e-10 69.3 89 51.7
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 9.4e-10 68.2 111 41.4
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 1.2e-09 67.8 70 52.9
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 1.1e-07 61.2 79 46.8
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 2.0e-07 60.5 143 34.3
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 9.7e-07 58.2 29 93.1
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 6.3e-06 55.5 123 30.9


User provided reference genes

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