Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C027866.2 Cucumis melo HOM05D008845 ORTHO05D011644 2.2e-196 688.7 343 100.0
Dinv06664 Davidia involucrata HOM05D008845 ORTHO05D011644 4.8e-13 79.7 125 48.0
ClCG02G020700 Citrullus lanatus HOM05D000146 ORTHO05D002262 3.2e-09 67.0 102 43.1
CsaV3_6G021920 Cucumis sativus L. HOM05D000146 ORTHO05D002262 3.2e-09 67.0 95 44.2
MELO3C025720.2 Cucumis melo HOM05D000146 ORTHO05D002262 4.2e-09 66.6 95 44.2
MSTRG.12623 Avicennia marina HOM05D000146 ORTHO05D002262 1.2e-08 65.1 95 43.2
SalBow3G2698 Salvia bowleyana HOM05D000146 ORTHO05D002262 1.2e-08 65.1 78 46.2
Sed0014299 Sechium edule HOM05D000146 ORTHO05D002262 1.2e-08 65.1 78 47.4
Actinidia07094 Actinidia chinensis HOM05D000146 ORTHO05D002262 2.1e-08 64.3 95 43.2
Migut.N02640 Erythranthe guttata HOM05D000146 ORTHO05D002262 2.1e-08 64.3 86 40.7
CSS0004786 Camellia sinensis var. sinensis HOM05D000146 ORTHO05D002262 4.6e-08 63.2 86 41.9
Ciclev10027740m.g Citrus clementina HOM05D000146 ORTHO05D002262 4.6e-08 63.2 78 43.6
DCAR_015577 Daucus carota HOM05D000146 ORTHO05D002262 6.0e-08 62.8 86 41.9
FAN21G3324 Fragaria x ananassa HOM05D000146 ORTHO05D002262 6.0e-08 62.8 89 42.7
FvH4_3g34270 Fragaria vesca HOM05D000146 ORTHO05D002262 7.9e-08 62.4 78 42.3
FAN11G2425 Fragaria x ananassa HOM05D000146 ORTHO05D002262 7.9e-08 62.4 78 42.3
FAN16G1392 Fragaria x ananassa HOM05D000146 ORTHO05D002262 1.0e-07 62.0 78 41.0
Rhsim13G0089900 Rhododendron simsii HOM05D000146 ORTHO05D002262 1.3e-07 61.6 95 40.0
RhsimUnG0139700 Rhododendron simsii HOM05D000146 ORTHO05D002262 1.3e-07 61.6 95 40.0
RcHm_v2.0_Chr5g0061821 Rosa chinensis HOM05D000146 ORTHO05D002262 1.3e-07 61.6 76 42.1
Sed0014494 Sechium edule HOM05D000146 ORTHO05D002262 1.3e-07 61.6 102 38.2
Gohir.A03G035900 Gossypium hirsutum HOM05D000146 ORTHO05D002262 1.8e-07 61.2 95 41.1
Eucgr.J02109 Eucalyptus grandis HOM05D000146 ORTHO05D002262 2.3e-07 60.8 78 43.6
Lj3g0007160 Lotus japonicus HOM05D000146 ORTHO05D002262 2.3e-07 60.8 78 43.6
SGA_v2.0_scaffold104G30109 Striga asiatica HOM05D000146 ORTHO05D002262 3.0e-07 60.5 86 41.9
Ca_19218_v3 Cicer arietinum L. HOM05D000146 ORTHO05D002262 3.9e-07 60.1 78 41.0
COL.COLO4_18401 Corchorus olitorius HOM05D000146 ORTHO05D002262 3.9e-07 60.1 95 42.1
Gohir.D03G132400 Gossypium hirsutum HOM05D000146 ORTHO05D002262 3.9e-07 60.1 95 40.0
Gorai.003G139300 Gossypium raimondii HOM05D000146 ORTHO05D002262 3.9e-07 60.1 95 40.0
PGR119G2541 Punica granatum HOM05D000146 ORTHO05D002262 3.9e-07 60.1 85 41.2
Actinidia37275 Actinidia chinensis HOM05D000146 ORTHO05D002262 5.1e-07 59.7 95 41.1
Nitab4.5_0004015g0050 Nicotiana tabacum HOM05D000146 ORTHO05D002262 5.1e-07 59.7 95 38.9
Prupe.6G089800 Prunus persica HOM05D000146 ORTHO05D002262 5.1e-07 59.7 86 41.9
Cc01_g11930 Coffea canephora HOM05D000146 ORTHO05D002262 6.7e-07 59.3 95 40.0
Peaxi162Scf00616g00630 Petunia axillaris HOM05D000146 ORTHO05D002262 6.7e-07 59.3 101 38.6
PGSC0003DMG400025361 Solanum tuberosum HOM05D000146 ORTHO05D002262 6.7e-07 59.3 95 37.9
arahy.Tifrunner.gnm1.ann1.D4N0FV Arachis hypogaea HOM05D000146 ORTHO05D002262 8.7e-07 58.9 78 39.7
Gohir.A05G099800 Gossypium hirsutum HOM05D000146 ORTHO05D002262 8.7e-07 58.9 88 42.0
Psat7g221520 Pisum sativum HOM05D000146 ORTHO05D002262 8.7e-07 58.9 78 41.0
TAR623G0204 Trochodendron aralioides HOM05D000146 ORTHO05D002262 8.7e-07 58.9 95 38.9
arahy.Tifrunner.gnm1.ann1.TRA7C7 Arachis hypogaea HOM05D000146 ORTHO05D002262 1.1e-06 58.5 78 42.3
arahy.Tifrunner.gnm1.ann1.ZC14HK Arachis hypogaea HOM05D000146 ORTHO05D002262 1.1e-06 58.5 78 42.3
Cpa.g.sc139.19 Carica papaya HOM05D000146 ORTHO05D002262 1.1e-06 58.5 95 37.9
CDE04G2163 Ceratophyllum demersum HOM05D000146 ORTHO05D002262 1.1e-06 58.5 80 41.2
Sopen11g030380 Solanum pennellii HOM05D000146 ORTHO05D002262 1.1e-06 58.5 95 37.9
Duzib168G1553 Durio zibethinus HOM05D000146 ORTHO05D002262 1.5e-06 58.2 95 38.9
Hma1.2p1_0746F.1_g212200 Hydrangea macrophylla HOM05D000146 ORTHO05D002262 1.5e-06 58.2 78 39.7
Nn2g12937 Nelumbo nucifera HOM05D000146 ORTHO05D002262 1.5e-06 58.2 95 38.9
GSVIVG01025082001 Vitis vinifera HOM05D000146 ORTHO05D002262 1.5e-06 58.2 85 40.0
ATR0594G160 Amborella trichopoda HOM05D000146 ORTHO05D002262 1.9e-06 57.8 102 34.3
DCAR_006022 Daucus carota HOM05D000146 ORTHO05D002262 1.9e-06 57.8 95 37.9
Medtr2g095980 Medicago truncatula HOM05D000146 ORTHO05D002262 1.9e-06 57.8 78 41.0
THA.LOC104810827 Tarenaya hassleriana HOM05D000146 ORTHO05D002262 1.9e-06 57.8 95 41.1
unitig_0.g1031 Utricularia gibba HOM05D000146 ORTHO05D002262 1.9e-06 57.8 78 41.0
Zm00001eb163120 Zea mays HOM05D000146 ORTHO05D002262 1.9e-06 57.8 78 39.7
arahy.Tifrunner.gnm1.ann1.1Q8FTJ Arachis hypogaea HOM05D000146 ORTHO05D002262 2.5e-06 57.4 78 37.2
CDE07G0459 Ceratophyllum demersum HOM05D000146 ORTHO05D002262 2.5e-06 57.4 89 40.4
TWI75G1332 Tripterygium wilfordii HOM05D000146 ORTHO05D002262 2.5e-06 57.4 102 38.2
vmacro03141 Vaccinium macrocarpon HOM05D000146 ORTHO05D002262 2.5e-06 57.4 95 37.9
Aqoxy2G01922 Aquilegia oxysepala HOM05D000146 ORTHO05D002262 3.3e-06 57.0 85 40.0
MELO3C031202.2 Cucumis melo HOM05D000306 ORTHO05D005993 3.3e-06 57.0 28 85.7
Psat5g281640 Pisum sativum HOM05D000146 ORTHO05D002262 3.3e-06 57.0 78 39.7
CANSAT54G0718 Cannabis sativa HOM05D000146 ORTHO05D002262 4.3e-06 56.6 102 37.3
ECA248G2220 Erigeron canadensis HOM05D000146 ORTHO05D002262 4.3e-06 56.6 77 37.7
Glyma.13G330400 Glycine max HOM05D000146 ORTHO05D002262 4.3e-06 56.6 84 38.1
Glyma.15G043600 Glycine max HOM05D000146 ORTHO05D002262 4.3e-06 56.6 84 38.1
HanXRQChr16g0530481 Helianthus annuus HOM05D000146 ORTHO05D002262 4.3e-06 56.6 77 36.4
Medtr4g061610 Medicago truncatula HOM05D000146 ORTHO05D002262 4.3e-06 56.6 78 37.2
Nitab4.5_0008740g0010 Nicotiana tabacum HOM05D000146 ORTHO05D002262 4.3e-06 56.6 95 37.9
MD11G1119700 Malus domestica HOM05D000146 ORTHO05D002262 5.6e-06 56.2 78 41.0
Phvul.L001848 Phaseolus vulgaris HOM05D000146 ORTHO05D002262 5.6e-06 56.2 72 41.7
QL01p035414 Quercus lobata HOM05D000146 ORTHO05D002262 5.6e-06 56.2 78 38.5
TPR.G2972 Trifolium pratense HOM05D000146 ORTHO05D002262 5.6e-06 56.2 78 38.5
VMungo1080G0202 Vigna mungo HOM05D000146 ORTHO05D002262 5.6e-06 56.2 84 38.1
Aa31LG4G15020 Aethionema arabicum HOM05D000146 ORTHO05D002262 7.4e-06 55.8 77 42.9
Carub.0005s1164 Capsella rubella HOM05D000146 ORTHO05D002262 7.4e-06 55.8 78 42.3
CAN.G84.15 Capsicum annuum HOM05D000146 ORTHO05D002262 7.4e-06 55.8 95 37.9
Ca_01365_v3 Cicer arietinum L. HOM05D000146 ORTHO05D002262 7.4e-06 55.8 78 41.0
Lalb_Chr24g0394331 Lupinus albus HOM05D000146 ORTHO05D002262 7.4e-06 55.8 77 41.6
Manes.11G138200 Manihot esculenta HOM05D000146 ORTHO05D002262 7.4e-06 55.8 78 39.7
Sc12g0001930 Simmondsia chinensis HOM05D000146 ORTHO05D002262 7.4e-06 55.8 85 37.6
AL5G24480 Arabidopsis lyrata HOM05D000146 ORTHO05D002262 9.6e-06 55.5 95 40.0
A06p26920 Brassica napus HOM05D000146 ORTHO05D002262 9.6e-06 55.5 101 39.6
PSO339G0348 Papaver somniferum HOM05D000146 ORTHO05D002262 9.6e-06 55.5 85 40.0
PSO384G1290 Papaver somniferum HOM05D000146 ORTHO05D002262 9.6e-06 55.5 85 40.0


User provided reference genes

Program Settings