Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 2.6e-41 171.8 95 100.0
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 2.6e-41 171.8 95 100.0
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 8.2e-40 166.8 95 95.8
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 8.2e-40 166.8 95 95.8
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 2.2e-37 158.7 95 90.5
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 2.2e-37 158.7 95 91.6
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 6.5e-37 157.1 95 89.5
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 6.5e-37 157.1 95 90.5
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 1.4e-36 156.0 95 90.5
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 1.9e-36 155.6 95 90.5
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 1.9e-36 155.6 95 88.4
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 4.2e-36 154.5 95 89.5
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 4.2e-36 154.5 95 89.5
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 5.5e-36 154.1 95 89.5
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 5.5e-36 154.1 95 89.5
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 5.5e-36 154.1 95 89.5
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 5.5e-36 154.1 95 88.4
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 5.5e-36 154.1 95 88.4
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 5.5e-36 154.1 95 88.4
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 5.5e-36 154.1 95 88.4
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 5.5e-36 154.1 95 88.4
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 5.5e-36 154.1 95 88.4
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 1.2e-35 152.9 95 88.4
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 1.6e-35 152.5 95 88.4
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 1.6e-35 152.5 95 87.4
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 3.6e-35 151.4 95 85.3
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 3.6e-35 151.4 95 85.3
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 3.6e-35 151.4 95 85.3
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 3.6e-35 151.4 95 85.3
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 3.6e-35 151.4 95 85.3
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 3.6e-35 151.4 95 85.3
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 3.6e-35 151.4 95 85.3
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 3.6e-35 151.4 95 85.3
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 3.6e-35 151.4 95 87.4
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 7.9e-35 150.2 95 87.4
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 7.9e-35 150.2 95 87.4
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.0e-34 149.8 95 87.4
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 1.8e-34 149.1 95 85.3
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 3.0e-34 148.3 83 97.6
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 3.9e-34 147.9 95 84.2
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 5.2e-34 147.5 95 85.3
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 2.0e-33 145.6 95 83.2
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.0e-33 145.6 95 86.3
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 5.7e-33 144.1 95 83.2
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 7.4e-33 143.7 95 83.2
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 7.4e-33 143.7 95 83.2
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 7.4e-33 143.7 95 83.2
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-33 143.3 95 84.2
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 1.3e-32 142.9 96 82.3
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 1.7e-32 142.5 95 84.2
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 2.8e-32 141.7 95 83.2
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 6.3e-32 140.6 95 83.2
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 6.3e-32 140.6 95 83.2
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 6.3e-32 140.6 95 83.2
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 6.3e-32 140.6 95 83.2
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.1e-31 139.8 93 82.8
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 2.4e-31 138.7 105 77.1
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 5.3e-31 137.5 95 80.0
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 3.5e-30 134.8 95 76.8
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 4.5e-30 134.4 95 77.9
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 4.5e-30 134.4 85 87.1
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 7.7e-30 133.7 95 81.1
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.0e-29 133.3 81 88.9
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 1.7e-29 132.5 86 83.7
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 8.5e-29 130.2 85 83.5
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 9.4e-28 126.7 124 64.5
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 1.6e-27 125.9 86 82.6
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.7e-27 125.2 81 86.4
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.8e-26 122.5 74 90.5
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 4.0e-26 121.3 75 88.0
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 3.3e-25 118.2 79 79.7
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 2.4e-23 112.1 73 82.2
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.2e-22 109.8 68 88.2
Solyc07g021380.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.2e-22 109.8 86 74.4
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.6e-22 109.4 77 80.5
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.7e-22 108.6 76 78.9
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.5e-22 107.8 76 80.3
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 5.9e-22 107.5 65 87.7
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.0e-21 106.7 66 84.8
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 2.2e-21 105.5 72 81.9
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 2.9e-21 105.1 64 84.4
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 2.9e-21 105.1 64 84.4
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 3.8e-21 104.8 95 62.1
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 3.8e-21 104.8 95 62.1
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 6.5e-21 104.0 65 83.1
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 6.5e-21 104.0 61 91.8
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 6.5e-21 104.0 67 83.6
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 6.5e-21 104.0 64 85.9
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 1.1e-20 103.2 63 87.3
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 4.2e-20 101.3 73 75.3
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 5.5e-20 100.9 95 65.3
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 9.4e-20 100.1 61 85.2
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 1.6e-19 99.4 64 84.4
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.7e-19 97.8 68 79.4
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 8.0e-19 97.1 68 77.9
MD08G1060700 Malus domestica HOM05D005015 ORTHO05D005696 2.3e-18 95.5 61 82.0
Gohir.D06G126233 Gossypium hirsutum HOM05D005015 ORTHO05D005696 9.8e-17 90.1 53 90.6
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 9.8e-17 90.1 80 66.2
CsaV3_UNG207830 Cucumis sativus L. HOM05D000216 ORTHO05D003638 2.2e-16 89.0 49 98.0
EL10Ac5g12103 Beta vulgaris HOM05D005015 ORTHO05D005696 1.2e-14 83.2 66 72.7
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 2.0e-14 82.4 55 80.0
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.5e-14 81.6 51 88.2
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 4.5e-14 81.3 61 72.1
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.7e-13 79.3 47 85.1
Gorai.011G235400 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.2e-12 75.1 49 83.7
Gohir.D10G209550 Gossypium hirsutum HOM05D005015 ORTHO05D005696 7.2e-12 73.9 49 81.6
Gorai.011G231900 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.6e-11 72.8 46 84.8
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.1e-11 72.4 74 63.5
Nn1g01955 Nelumbo nucifera HOM05D005015 ORTHO05D005696 4.0e-10 68.2 38 89.5
Nn2g15007 Nelumbo nucifera HOM05D005015 ORTHO05D005696 4.0e-10 68.2 38 89.5
Psat0s1586g0120 Pisum sativum HOM05D000216 ORTHO05D003638 4.0e-10 68.2 41 87.8
Lj2C1238T11 Lonicera japonica HOM05D000743 ORTHO05D000580 5.2e-10 67.8 41 85.4
arahy.Tifrunner.gnm1.ann1.KLBW9T Arachis hypogaea HOM05D005015 ORTHO05D005696 1.3e-08 63.2 61 60.7
Gorai.002G106400 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.7e-08 62.8 46 76.1
SMO086G0010 Selaginella moellendorffii HOM05D005015 ORTHO05D005696 2.8e-08 62.0 61 55.7
Migut.D01410 Erythranthe guttata HOM05D005015 ORTHO05D005696 4.9e-08 61.2 76 53.9
Gorai.004G111300 Gossypium raimondii HOM05D000743 ORTHO05D000580 1.2e-06 56.6 78 48.7


User provided reference genes

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