Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 3.3e-62 241.5 118 100.0
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 8.0e-61 236.9 118 99.2
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 8.0e-61 236.9 118 99.2
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 8.0e-61 236.9 118 99.2
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 8.0e-61 236.9 118 99.2
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 8.0e-61 236.9 118 99.2
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 8.0e-61 236.9 118 99.2
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 8.0e-61 236.9 118 99.2
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 8.0e-61 236.9 118 99.2
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 2.3e-60 235.3 118 98.3
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 2.3e-60 235.3 118 98.3
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 4.0e-60 234.6 118 98.3
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 4.0e-60 234.6 118 98.3
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 4.0e-60 234.6 118 98.3
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 4.0e-60 234.6 118 98.3
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 4.0e-60 234.6 118 98.3
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 4.0e-60 234.6 118 98.3
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 4.0e-60 234.6 118 98.3
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 2.0e-59 232.3 118 97.5
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 3.4e-59 231.5 118 97.5
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 5.7e-59 230.7 118 96.6
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 5.7e-59 230.7 118 97.5
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 5.7e-59 230.7 118 97.5
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 5.7e-59 230.7 118 97.5
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.7e-59 230.7 118 97.5
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.7e-59 230.7 118 97.5
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.7e-59 230.7 118 97.5
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 5.7e-59 230.7 118 97.5
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 5.7e-59 230.7 118 97.5
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 2.9e-58 228.4 118 96.6
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 2.9e-58 228.4 118 96.6
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 2.9e-58 228.4 118 96.6
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 2.9e-58 228.4 118 96.6
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 2.9e-58 228.4 118 96.6
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 2.9e-58 228.4 118 96.6
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 2.9e-58 228.4 118 96.6
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 2.9e-58 228.4 118 96.6
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 2.9e-58 228.4 118 95.8
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 2.9e-58 228.4 118 96.6
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 2.9e-58 228.4 118 96.6
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 2.9e-58 228.4 118 96.6
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.7e-58 228.0 118 95.8
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.7e-58 228.0 118 95.8
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 8.3e-58 226.9 118 95.8
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 4.1e-57 224.6 118 94.1
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 1.2e-56 223.0 118 92.4
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 2.0e-56 222.2 118 92.4
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.5e-56 221.5 118 94.9
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 1.1e-54 216.5 107 100.0
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 1.5e-54 216.1 107 99.1
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.5e-54 216.1 118 93.2
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.6e-54 214.2 107 99.1
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.6e-54 214.2 107 99.1
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 5.6e-54 214.2 107 99.1
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.2e-53 213.0 124 87.9
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.2e-53 213.0 124 87.9
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 2.8e-53 211.8 109 97.2
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 8.0e-53 210.3 107 98.1
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 1.8e-52 209.1 111 93.7
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.0e-52 208.0 118 89.8
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 8.9e-52 206.8 118 88.1
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.2e-49 198.4 107 93.5
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 6.2e-45 184.1 117 82.9
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 4.0e-44 181.4 118 80.5
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 7.3e-38 160.6 118 73.7
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 1.2e-37 159.8 118 72.9
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.4e-36 156.4 114 74.6
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 2.9e-34 148.7 77 97.4
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 9.2e-33 143.7 72 97.2
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.7e-32 142.1 118 64.4
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.3e-31 139.0 92 79.3
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.1e-30 136.7 72 94.4
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.1e-30 136.7 72 94.4
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.1e-30 136.7 72 94.4
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 1.1e-30 136.7 72 94.4
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 2.8e-29 132.1 72 90.3
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 5.2e-28 127.9 99 72.7
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 8.9e-28 127.1 85 70.6
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.6e-27 125.6 107 66.4
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-25 120.2 107 62.6
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 5.4e-25 117.9 65 86.2
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.6e-24 114.8 118 58.5
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.0e-23 113.6 103 63.1
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 2.5e-22 109.0 109 46.8
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 3.6e-21 105.1 108 59.3
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 6.2e-21 104.4 120 54.2
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 1.8e-20 102.8 101 58.4
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 4.0e-20 101.7 83 67.5
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 1.5e-19 99.8 134 50.0
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 2.0e-19 99.4 68 75.0
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 1.3e-18 96.7 55 90.9
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 9.3e-17 90.5 47 93.6
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 2.5e-14 82.4 50 82.0
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.1e-13 79.3 45 86.7
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 4.0e-12 75.1 41 85.4
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 5.3e-12 74.7 43 83.7
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 3.4e-11 72.0 38 94.7
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 6.4e-10 67.8 37 91.9
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 8.4e-10 67.4 45 73.3
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 2.4e-09 65.9 36 88.9
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 1.2e-08 63.5 46 71.7
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 1.6e-08 63.2 55 63.6
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 6.0e-08 61.2 118 36.4
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 7.9e-08 60.8 45 71.1
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 3.9e-07 58.5 27 96.3


User provided reference genes

Program Settings