Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 1.3e-64 249.6 127 100.0
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 1.9e-55 219.2 143 81.8
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 7.1e-55 217.2 143 81.1
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 2.5e-44 182.2 143 65.0
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 7.3e-44 180.6 145 68.3
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 3.6e-43 178.3 143 64.3
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 6.2e-43 177.6 146 65.8
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 8.1e-43 177.2 143 64.3
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 1.4e-42 176.4 128 73.4
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 9.0e-42 173.7 143 65.0
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 1.2e-41 173.3 144 66.0
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 4.5e-41 171.4 144 66.0
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 7.6e-41 170.6 127 68.5
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 7.6e-41 170.6 127 68.5
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 7.6e-41 170.6 143 61.5
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 1.3e-40 169.9 143 65.7
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 1.3e-40 169.9 143 65.7
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 1.7e-40 169.5 143 65.0
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 2.2e-40 169.1 143 61.5
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 2.2e-40 169.1 143 61.5
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 2.2e-40 169.1 143 61.5
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 2.2e-40 169.1 143 61.5
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 2.2e-40 169.1 143 61.5
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 2.2e-40 169.1 143 61.5
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 2.2e-40 169.1 143 61.5
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 3.8e-40 168.3 133 67.7
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 4.9e-40 167.9 143 63.6
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 6.4e-40 167.5 143 61.5
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 8.4e-40 167.2 143 62.2
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.4e-40 167.2 141 64.5
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.4e-40 167.2 141 64.5
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.4e-40 167.2 141 64.5
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.4e-40 167.2 141 64.5
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.4e-40 167.2 143 64.3
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.4e-40 167.2 143 64.3
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.4e-40 167.2 143 64.3
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.4e-40 167.2 143 64.3
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.4e-40 167.2 143 64.3
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 8.4e-40 167.2 143 64.3
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 1.4e-39 166.4 143 60.8
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 1.9e-39 166.0 143 64.3
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 2.4e-39 165.6 143 63.6
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.4e-39 165.6 141 63.8
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.2e-39 165.2 141 63.8
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.4e-39 164.5 141 63.1
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 9.3e-39 163.7 143 60.1
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 9.3e-39 163.7 143 60.1
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 9.3e-39 163.7 143 62.2
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 9.3e-39 163.7 143 62.2
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 6.0e-38 161.0 143 60.8
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 7.9e-38 160.6 143 62.2
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 1.0e-37 160.2 143 62.2
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 1.8e-37 159.5 143 58.0
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 8.7e-37 157.1 133 64.7
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 6.2e-35 151.0 150 54.0
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 2.4e-34 149.1 139 59.0
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 3.1e-34 148.7 122 65.6
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 9.0e-34 147.1 141 59.6
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.5e-33 144.8 141 58.2
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 5.8e-33 144.4 132 56.8
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 7.6e-33 144.1 128 62.5
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 9.9e-33 143.7 130 57.7
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 2.2e-32 142.5 118 64.4
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 1.1e-31 140.2 129 59.7
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 2.4e-31 139.0 127 61.4
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 3.2e-31 138.7 102 70.6
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 5.5e-31 137.9 106 67.0
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.0e-30 134.4 133 57.9
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.7e-29 131.0 141 58.2
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.8e-27 125.6 103 62.1
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 2.8e-27 125.6 142 52.1
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 3.7e-27 125.2 100 65.0
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 1.8e-26 122.9 119 57.1
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.4e-26 122.5 125 57.6
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 5.8e-25 117.9 143 49.0
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 8.4e-24 114.0 127 50.4
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 1.1e-23 113.6 136 52.9
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 1.4e-23 113.2 114 57.0
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 1.4e-23 113.2 116 54.3
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 2.7e-22 109.0 133 49.6
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.5e-20 102.4 78 69.2
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 4.3e-20 101.7 127 45.7
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.3e-19 100.1 60 76.7
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.7e-19 98.6 60 75.0
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 4.8e-19 98.2 106 52.8
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 6.3e-19 97.8 60 75.0
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 2.4e-18 95.9 60 73.3
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 3.1e-18 95.5 85 62.4
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 2.6e-17 92.4 60 68.3
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 1.7e-16 89.7 59 72.9
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 1.4e-15 86.7 72 59.7
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 1.6e-14 83.2 66 68.2
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 6.1e-14 81.3 52 78.8
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 1.4e-13 80.1 58 62.1
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 1.8e-13 79.7 58 67.2
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.0e-13 79.0 65 61.5
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 5.1e-13 78.2 44 81.8
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 5.7e-12 74.7 66 59.1
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 9.7e-12 73.9 52 75.0
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 2.4e-10 69.3 47 63.8
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 5.3e-10 68.2 44 72.7
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 1.2e-09 67.0 58 62.1
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 1.5e-09 66.6 45 64.4
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 4.5e-09 65.1 42 69.0
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 6.5e-08 61.2 41 65.9
GSVIVG01001302001 Vitis vinifera HOM05D004473 ORTHO05D005652 3.2e-07 58.9 58 56.9
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 5.5e-07 58.2 35 71.4
TPR.G40774 Trifolium pratense HOM05D004473 ORTHO05D005652 7.2e-07 57.8 42 73.8
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.2e-06 57.0 39 69.2


User provided reference genes

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