Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C027342.2 Cucumis melo HOM05D007501 ORTHO05D009528 8.7e-75 283.5 138 100.0
CsaV3_4G032800 Cucumis sativus L. HOM05D007501 ORTHO05D009528 1.3e-65 253.1 139 92.1
ClCG11G017140 Citrullus lanatus HOM05D007501 ORTHO05D009528 1.6e-52 209.5 142 78.9
Sed0021060 Sechium edule HOM05D007501 ORTHO05D009528 6.5e-38 161.0 138 63.8
Potri.011G103500 Populus trichocarpa HOM05D007501 ORTHO05D009528 2.4e-24 115.9 166 45.2
Sabra11G0077300 Salix brachista HOM05D007501 ORTHO05D009528 4.1e-24 115.2 164 45.7
Sabra11G0082200 Salix brachista HOM05D007501 ORTHO05D009528 4.1e-24 115.2 164 45.7
Gohir.D11G302600 Gossypium hirsutum HOM05D007501 ORTHO05D009528 2.0e-23 112.8 160 42.5
TWI39G1127 Tripterygium wilfordii HOM05D007501 ORTHO05D009528 2.0e-23 112.8 146 45.9
Gorai.007G332200 Gossypium raimondii HOM05D007501 ORTHO05D009528 3.5e-23 112.1 160 41.9
MD03G1250700 Malus domestica HOM05D007501 ORTHO05D009528 7.8e-23 110.9 160 44.4
Gohir.A11G289800 Gossypium hirsutum HOM05D007501 ORTHO05D009528 1.3e-22 110.2 155 42.6
COL.COLO4_03607 Corchorus olitorius HOM05D007501 ORTHO05D009528 1.1e-21 107.1 154 45.5
Duzib213G0875 Durio zibethinus HOM05D007501 ORTHO05D009528 1.1e-21 107.1 162 43.8
Cc05_g10640 Coffea canephora HOM05D007501 ORTHO05D009528 1.9e-21 106.3 160 44.4
Haze_08443 Corylus avellana HOM05D007501 ORTHO05D009528 1.9e-21 106.3 147 48.3
Manes.15G099000 Manihot esculenta HOM05D007501 ORTHO05D009528 1.9e-21 106.3 168 42.3
CiPaw.12G110200 Carya illinoinensis HOM05D007501 ORTHO05D009528 7.3e-21 104.4 133 52.6
RcHm_v2.0_Chr5g0029351 Rosa chinensis HOM05D007501 ORTHO05D009528 9.5e-21 104.0 163 42.3
Dinv13355 Davidia involucrata HOM05D007501 ORTHO05D009528 1.2e-20 103.6 139 46.8
MD11G1270900 Malus domestica HOM05D007501 ORTHO05D009528 2.1e-20 102.8 171 42.1
GSVIVG01014087001 Vitis vinifera HOM05D007501 ORTHO05D009528 2.1e-20 102.8 147 41.5
Manes.03G078700 Manihot esculenta HOM05D007501 ORTHO05D009528 3.6e-20 102.1 167 41.3
Nn3g20958 Nelumbo nucifera HOM05D007501 ORTHO05D009528 3.6e-20 102.1 145 43.4
Eucgr.F01372 Eucalyptus grandis HOM05D007501 ORTHO05D009528 6.1e-20 101.3 157 42.0
CSS0000849 Camellia sinensis var. sinensis HOM05D007501 ORTHO05D009528 1.0e-19 100.5 156 41.7
FAN21G3657 Fragaria x ananassa HOM05D007501 ORTHO05D009528 1.0e-19 100.5 162 40.7
QL08p025249 Quercus lobata HOM05D007501 ORTHO05D009528 1.0e-19 100.5 172 38.4
FvH4_3g17620 Fragaria vesca HOM05D007501 ORTHO05D009528 1.4e-19 100.1 162 40.7
FAN11G3003 Fragaria x ananassa HOM05D007501 ORTHO05D009528 1.4e-19 100.1 162 40.7
SalBow8G3616 Salvia bowleyana HOM05D007501 ORTHO05D009528 1.4e-19 100.1 140 42.9
FAN25G1377 Fragaria x ananassa HOM05D007501 ORTHO05D009528 2.3e-19 99.4 162 40.1
Potri.001G382800 Populus trichocarpa HOM05D007501 ORTHO05D009528 2.3e-19 99.4 172 41.9
PGR083G0065 Punica granatum HOM05D007501 ORTHO05D009528 2.3e-19 99.4 144 43.8
vmacro09418 Vaccinium macrocarpon HOM05D007501 ORTHO05D009528 6.8e-19 97.8 155 41.3
PSO541G4098 Papaver somniferum HOM05D007501 ORTHO05D009528 8.9e-19 97.4 162 40.1
Cfa019508 Carpinus fangiana HOM05D007501 ORTHO05D009528 1.2e-18 97.1 157 42.0
HanXRQChr11g0331231 Helianthus annuus HOM05D007501 ORTHO05D009528 1.2e-18 97.1 149 44.3
Oeu059251.1 Olea europaea HOM05D007501 ORTHO05D009528 1.2e-18 97.1 154 42.9
PSO675G1715 Papaver somniferum HOM05D007501 ORTHO05D009528 2.0e-18 96.3 162 38.9
arahy.Tifrunner.gnm1.ann1.652QPS Arachis hypogaea HOM05D007501 ORTHO05D009528 9.8e-18 94.0 159 41.5
Prupe.4G155600 Prunus persica HOM05D007501 ORTHO05D009528 2.2e-17 92.8 160 40.6
arahy.Tifrunner.gnm1.ann1.5U50EQ Arachis hypogaea HOM05D007501 ORTHO05D009528 4.9e-17 91.7 170 38.2
Ciclev10024060m.g Citrus clementina HOM05D007501 ORTHO05D009528 4.9e-17 91.7 142 40.1
Actinidia03620 Actinidia chinensis HOM05D007501 ORTHO05D009528 1.1e-16 90.5 150 40.0
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 1.4e-16 90.1 138 37.7
Peaxi162Scf01338g00001 Petunia axillaris HOM05D007501 ORTHO05D009528 9.2e-16 87.4 164 34.1
PGSC0003DMG400021255 Solanum tuberosum HOM05D007501 ORTHO05D009528 1.2e-15 87.0 146 42.5
RhsimUnG0206300 Rhododendron simsii HOM05D007501 ORTHO05D009528 1.6e-15 86.7 158 38.0
THA.LOC104822580 Tarenaya hassleriana HOM05D007501 ORTHO05D009528 1.6e-15 86.7 151 40.4
Thhalv10021658m.g Eutrema salsugineum HOM05D007501 ORTHO05D009528 2.0e-15 86.3 152 38.8
Sopen10g003430 Solanum pennellii HOM05D007501 ORTHO05D009528 4.6e-15 85.1 145 42.1
Aqoxy4G00171 Aquilegia oxysepala HOM05D007501 ORTHO05D009528 6.0e-15 84.7 150 38.0
Carub.0003s1443 Capsella rubella HOM05D007501 ORTHO05D009528 6.0e-15 84.7 161 37.9
CARHR089710 Cardamine hirsuta HOM05D007501 ORTHO05D009528 6.0e-15 84.7 166 35.5
Nitab4.5_0001140g0140 Nicotiana tabacum HOM05D007501 ORTHO05D009528 6.0e-15 84.7 145 41.4
Solyc10g007490.2 Solanum lycopersicum HOM05D007501 ORTHO05D009528 6.0e-15 84.7 144 42.4
C01p49690 Brassica napus HOM05D007501 ORTHO05D009528 1.0e-14 84.0 150 40.7
BolC1t04925H Brassica oleracea HOM05D007501 ORTHO05D009528 1.0e-14 84.0 150 40.7
BraA01t03953Z Brassica rapa HOM05D007501 ORTHO05D009528 1.3e-14 83.6 150 40.7
ECA236G0060 Erigeron canadensis HOM05D007501 ORTHO05D009528 1.3e-14 83.6 147 39.5
AL3G27070 Arabidopsis lyrata HOM05D007501 ORTHO05D009528 1.7e-14 83.2 159 39.6
Aa31LG8G1980 Aethionema arabicum HOM05D007501 ORTHO05D009528 3.9e-14 82.0 145 37.9
A01p39060 Brassica napus HOM05D007501 ORTHO05D009528 3.9e-14 82.0 150 40.0
Nitab4.5_0008460g0030 Nicotiana tabacum HOM05D007501 ORTHO05D009528 6.6e-14 81.3 145 37.9
SGA_v2.0_scaffold73G24380 Striga asiatica HOM05D007501 ORTHO05D009528 6.6e-14 81.3 160 36.9
Sopen07g030380 Solanum pennellii HOM05D007501 ORTHO05D009528 8.6e-14 80.9 142 42.3
PGSC0003DMG400043590 Solanum tuberosum HOM05D007501 ORTHO05D009528 1.1e-13 80.5 145 38.6
AT3G14760 Arabidopsis thaliana HOM05D007501 ORTHO05D009528 1.5e-13 80.1 149 36.2
Cpa.g.sc682.2 Carica papaya HOM05D007501 ORTHO05D009528 1.5e-13 80.1 152 36.8
Sp3g12990 Schrenkiella parvula HOM05D007501 ORTHO05D009528 1.5e-13 80.1 154 37.0
CAN.G375.54 Capsicum annuum HOM05D007501 ORTHO05D009528 1.9e-13 79.7 137 41.6
Lj3g0021891 Lotus japonicus HOM05D007501 ORTHO05D009528 1.9e-13 79.7 194 34.5
Thecc.07G134800 Theobroma cacao HOM05D007501 ORTHO05D009528 2.5e-13 79.3 154 40.3
Peaxi162Scf00111g00124 Petunia axillaris HOM05D007501 ORTHO05D009528 7.3e-13 77.8 143 36.4
Glyma.15G211700 Glycine max HOM05D007501 ORTHO05D009528 6.2e-12 74.7 173 33.5
Phvul.011G168000 Phaseolus vulgaris HOM05D007501 ORTHO05D009528 1.1e-11 73.9 181 33.1
Glyma.15G210500 Glycine max HOM05D007501 ORTHO05D009528 1.8e-11 73.2 180 33.9
DCAR_019618 Daucus carota HOM05D007501 ORTHO05D009528 2.3e-11 72.8 160 35.0
VMungo1127G2061 Vigna mungo HOM05D007501 ORTHO05D009528 1.2e-10 70.5 185 33.0
Medtr8g042500 Medicago truncatula HOM05D007501 ORTHO05D009528 2.0e-10 69.7 194 31.4
Nitab4.5_0000383g0020 Nicotiana tabacum HOM05D007501 ORTHO05D009528 2.0e-10 69.7 143 33.6
Migut.M00689 Erythranthe guttata HOM05D007501 ORTHO05D009528 2.6e-10 69.3 155 34.2
Psat4g135600 Pisum sativum HOM05D007501 ORTHO05D009528 9.8e-10 67.4 184 31.5
AUR62013946 Chenopodium quinoa HOM05D007501 ORTHO05D009528 4.9e-09 65.1 154 37.0
TPR.G16483 Trifolium pratense HOM05D007501 ORTHO05D009528 4.9e-09 65.1 193 28.5
BcaC09g48445 Brassica carinata HOM05D007501 ORTHO05D009528 1.1e-08 63.9 139 36.7
CANSAT56G4361 Cannabis sativa HOM05D007501 ORTHO05D009528 3.2e-08 62.4 166 33.7
AUR62019665 Chenopodium quinoa HOM05D007501 ORTHO05D009528 1.6e-07 60.1 154 33.1
SEGI_41065 Sequoiadendron giganteum HOM05D007501 ORTHO05D009528 1.6e-07 60.1 106 37.7
ATR0681G022 Amborella trichopoda HOM05D007501 ORTHO05D009528 4.6e-07 58.5 110 40.0
EL10Ac4g08429 Beta vulgaris HOM05D007501 ORTHO05D009528 5.1e-06 55.1 34 70.6
A05p31060 Brassica napus HOM05D002803 ORTHO05D003089 5.1e-06 55.1 65 47.7
BraA05t21948Z Brassica rapa HOM05D002803 ORTHO05D003089 5.1e-06 55.1 65 47.7
Pp3c4_18190 Physcomitrium patens HOM05D035914 ORTHO05D010468 5.1e-06 55.1 53 45.3


User provided reference genes

Program Settings