Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C027297.2 Cucumis melo HOM05D002472 ORTHO05D002827 2.2e-112 409.1 217 100.0
CsaV3_1G045680 Cucumis sativus L. HOM05D002472 ORTHO05D002827 5.4e-103 377.9 217 93.5
Sed0025137 Sechium edule HOM05D002472 ORTHO05D002827 2.7e-70 269.2 217 70.5
Sed0022641 Sechium edule HOM05D002472 ORTHO05D002827 3.0e-69 265.8 219 70.8
Manes.09G156400 Manihot esculenta HOM05D002472 ORTHO05D002827 1.2e-49 200.7 229 57.2
CiPaw.07G006900 Carya illinoinensis HOM05D002472 ORTHO05D002827 4.2e-47 192.2 223 55.6
Potri.005G049500 Populus trichocarpa HOM05D002472 ORTHO05D002827 7.1e-47 191.4 224 54.5
CANSAT54G0369 Cannabis sativa HOM05D002472 ORTHO05D002827 1.0e-45 187.6 219 57.5
Gorai.007G285400 Gossypium raimondii HOM05D002472 ORTHO05D002827 3.9e-45 185.7 218 55.0
Gohir.D11G265400 Gossypium hirsutum HOM05D002472 ORTHO05D002827 8.7e-45 184.5 218 54.6
Gohir.A11G255600 Gossypium hirsutum HOM05D002472 ORTHO05D002827 1.9e-44 183.3 218 55.0
QL03p024181 Quercus lobata HOM05D002472 ORTHO05D002827 2.1e-43 179.9 213 55.4
COL.COLO4_15276 Corchorus olitorius HOM05D002472 ORTHO05D002827 4.8e-43 178.7 219 56.2
QL03p024106 Quercus lobata HOM05D002472 ORTHO05D002827 1.1e-42 177.6 211 55.0
CSS0020760 Camellia sinensis var. sinensis HOM05D002472 ORTHO05D002827 2.6e-41 172.9 199 54.8
TWI36G0925 Tripterygium wilfordii HOM05D002472 ORTHO05D002827 7.6e-41 171.4 232 51.3
Dinv11559 Davidia involucrata HOM05D002472 ORTHO05D002827 1.1e-39 167.5 224 51.8
CiPaw.08G179100 Carya illinoinensis HOM05D002472 ORTHO05D002827 2.4e-39 166.4 230 50.9
Actinidia30924 Actinidia chinensis HOM05D002472 ORTHO05D002827 2.7e-38 162.9 169 62.7
Glyma.19G242800 Glycine max HOM05D002472 ORTHO05D002827 2.7e-38 162.9 171 60.8
Cfa006468 Carpinus fangiana HOM05D002472 ORTHO05D002827 1.8e-37 160.2 224 50.9
Cpa.g.sc264.12 Carica papaya HOM05D002472 ORTHO05D002827 3.0e-37 159.5 222 50.0
Actinidia05762 Actinidia chinensis HOM05D002472 ORTHO05D002827 2.5e-36 156.4 219 49.8
Duzib128G0462 Durio zibethinus HOM05D002472 ORTHO05D002827 5.6e-36 155.2 219 52.1
CAN.G134.169 Capsicum annuum HOM05D002472 ORTHO05D002827 2.1e-35 153.3 221 48.9
Oeu021635.2 Olea europaea HOM05D002472 ORTHO05D002827 2.1e-35 153.3 225 49.3
Hma1.2p1_0332F.1_g127690 Hydrangea macrophylla HOM05D002472 ORTHO05D002827 3.7e-35 152.5 146 62.3
Lj1g0020326 Lotus japonicus HOM05D002472 ORTHO05D002827 8.1e-35 151.4 132 69.7
Thecc.05G289000 Theobroma cacao HOM05D002472 ORTHO05D002827 1.8e-34 150.2 219 50.7
TAR365G1134 Trochodendron aralioides HOM05D002472 ORTHO05D002827 2.4e-34 149.8 232 46.6
arahy.Tifrunner.gnm1.ann1.E8NAY1 Arachis hypogaea HOM05D002472 ORTHO05D002827 3.1e-34 149.4 168 59.5
Medtr7g114660 Medicago truncatula HOM05D002472 ORTHO05D002827 5.3e-34 148.7 221 48.4
PGSC0003DMG400022472 Solanum tuberosum HOM05D002472 ORTHO05D002827 6.9e-34 148.3 220 48.6
Nn4g26312 Nelumbo nucifera HOM05D002472 ORTHO05D002827 1.2e-33 147.5 231 46.8
arahy.Tifrunner.gnm1.ann1.PGP8Y3 Arachis hypogaea HOM05D002472 ORTHO05D002827 3.4e-33 146.0 139 67.6
AUR62004992 Chenopodium quinoa HOM05D002472 ORTHO05D002827 3.4e-33 146.0 144 63.2
MD04G1220400 Malus domestica HOM05D002472 ORTHO05D002827 4.5e-33 145.6 225 48.0
AUR62000974 Chenopodium quinoa HOM05D002472 ORTHO05D002827 5.8e-33 145.2 144 63.2
SalBow3G1967 Salvia bowleyana HOM05D002472 ORTHO05D002827 5.8e-33 145.2 165 55.8
Sopen01g041460 Solanum pennellii HOM05D002472 ORTHO05D002827 5.8e-33 145.2 220 47.7
RcHm_v2.0_Chr3g0452121 Rosa chinensis HOM05D002472 ORTHO05D002827 1.0e-32 144.4 223 50.7
Rhsim07G0175700 Rhododendron simsii HOM05D002472 ORTHO05D002827 2.2e-32 143.3 190 53.2
Aa31LG2G12270 Aethionema arabicum HOM05D002472 ORTHO05D002827 2.9e-32 142.9 218 47.7
Gohir.D11G313500 Gossypium hirsutum HOM05D002472 ORTHO05D002827 3.8e-32 142.5 219 45.2
Gorai.007G344700 Gossypium raimondii HOM05D002472 ORTHO05D002827 8.4e-32 141.4 219 46.1
THA.LOC104821125 Tarenaya hassleriana HOM05D002472 ORTHO05D002827 8.4e-32 141.4 219 50.2
DCAR_006611 Daucus carota HOM05D002472 ORTHO05D002827 1.1e-31 141.0 221 45.7
Phvul.006G099600 Phaseolus vulgaris HOM05D002472 ORTHO05D002827 1.1e-31 141.0 203 50.2
Nitab4.5_0002361g0140 Nicotiana tabacum HOM05D002472 ORTHO05D002827 1.4e-31 140.6 219 47.0
Atru.chr2.723 Acer truncatum HOM05D002472 ORTHO05D002827 1.9e-31 140.2 222 45.9
EL10Ac4g09186 Beta vulgaris HOM05D002472 ORTHO05D002827 5.5e-31 138.7 224 46.4
PGR004G0868 Punica granatum HOM05D002472 ORTHO05D002827 9.3e-31 137.9 196 50.0
Nitab4.5_0002840g0020 Nicotiana tabacum HOM05D002472 ORTHO05D002827 1.2e-30 137.5 219 46.1
FAN02G1997 Fragaria x ananassa HOM05D002472 ORTHO05D002827 2.1e-30 136.7 221 48.0
FvH4_6g03530 Fragaria vesca HOM05D002472 ORTHO05D002827 2.7e-30 136.3 226 45.6
FAN09G3673 Fragaria x ananassa HOM05D002472 ORTHO05D002827 2.7e-30 136.3 226 46.0
AT1G54520 Arabidopsis thaliana HOM05D002472 ORTHO05D002827 3.5e-30 136.0 225 47.6
SpUn0001_0400 Schrenkiella parvula HOM05D002472 ORTHO05D002827 4.6e-30 135.6 133 65.4
Ciclev10001390m.g Citrus clementina HOM05D002472 ORTHO05D002827 6.0e-30 135.2 221 45.7
CARHR055610 Cardamine hirsuta HOM05D002472 ORTHO05D002827 7.9e-30 134.8 220 46.8
Duzib177G0067 Durio zibethinus HOM05D002472 ORTHO05D002827 7.9e-30 134.8 222 45.9
FAN05G1585 Fragaria x ananassa HOM05D002472 ORTHO05D002827 7.9e-30 134.8 226 47.3
FAN05G3932 Fragaria x ananassa HOM05D002472 ORTHO05D002827 7.9e-30 134.8 226 47.3
VMungo0540G0191 Vigna mungo HOM05D002472 ORTHO05D002827 1.0e-29 134.4 199 49.2
Migut.N01927 Erythranthe guttata HOM05D002472 ORTHO05D002827 2.3e-29 133.3 222 47.3
AL1G64960 Arabidopsis lyrata HOM05D002472 ORTHO05D002827 3.0e-29 132.9 223 47.1
Carub.0002s0913 Capsella rubella HOM05D002472 ORTHO05D002827 3.0e-29 132.9 223 47.5
Ca_09406_v3 Cicer arietinum L. HOM05D002472 ORTHO05D002827 5.1e-29 132.1 136 61.0
FAN14G0010 Fragaria x ananassa HOM05D002472 ORTHO05D002827 8.7e-29 131.3 226 44.7
Gohir.A11G298700 Gossypium hirsutum HOM05D002472 ORTHO05D002827 1.1e-28 131.0 219 43.4
Lj7A486G69 Lonicera japonica HOM05D002472 ORTHO05D002827 2.5e-28 129.8 130 62.3
PSO210G6821 Papaver somniferum HOM05D002472 ORTHO05D002827 1.3e-27 127.5 240 44.2
PSO832G0752 Papaver somniferum HOM05D002472 ORTHO05D002827 1.3e-27 127.5 240 44.2
unitig_899.g15577 Utricularia gibba HOM05D002472 ORTHO05D002827 1.3e-27 127.5 219 46.1
Thhalv10023608m.g Eutrema salsugineum HOM05D002472 ORTHO05D002827 1.6e-27 127.1 132 64.4
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 2.8e-27 126.3 148 58.1
Dinv17758 Davidia involucrata HOM05D002472 ORTHO05D002827 2.8e-27 126.3 99 74.7
MD12G1236800 Malus domestica HOM05D002472 ORTHO05D002827 4.8e-27 125.6 229 43.7
Prupe.6G339400 Prunus persica HOM05D002472 ORTHO05D002827 1.4e-26 124.0 226 42.9
CDE10G1257 Ceratophyllum demersum HOM05D002472 ORTHO05D002827 1.8e-26 123.6 127 57.5
HanXRQChr10g0295161 Helianthus annuus HOM05D002472 ORTHO05D002827 5.9e-25 118.6 119 63.9
Sc20g0000230 Simmondsia chinensis HOM05D002472 ORTHO05D002827 2.9e-24 116.3 188 46.8
BraA01t01842Z Brassica rapa HOM05D002472 ORTHO05D002827 3.8e-24 115.9 131 59.5
Lalb_Chr15g0076891 Lupinus albus HOM05D002472 ORTHO05D002827 6.5e-24 115.2 140 58.6
ATR0737G105 Amborella trichopoda HOM05D002472 ORTHO05D002827 1.4e-23 114.0 134 55.2
HPP92_023569 Vanilla planifolia HOM05D002472 ORTHO05D002827 1.4e-23 114.0 122 58.2
Manes.08G127900 Manihot esculenta HOM05D002472 ORTHO05D002827 5.5e-23 112.1 228 41.2
FAN13G1811 Fragaria x ananassa HOM05D002472 ORTHO05D002827 2.7e-22 109.8 190 44.2
SEGI_20824 Sequoiadendron giganteum HOM05D002472 ORTHO05D002827 3.6e-22 109.4 124 54.8
SGA_v2.0_scaffold196G40956 Striga asiatica HOM05D002472 ORTHO05D002827 6.1e-22 108.6 207 44.0
Sabra05G0044700 Salix brachista HOM05D002472 ORTHO05D002827 3.0e-21 106.3 223 38.1
Hund22109 Selenicereus undatus HOM05D002472 ORTHO05D002827 3.0e-21 106.3 155 47.7
CDE10G0574 Ceratophyllum demersum HOM05D002472 ORTHO05D002827 1.9e-20 103.6 121 55.4
A01p18990 Brassica napus HOM05D002472 ORTHO05D002827 1.3e-19 100.9 166 47.6
Aqoxy5G00475 Aquilegia oxysepala HOM05D002472 ORTHO05D002827 8.2e-19 98.2 233 39.1
Lsat_1_v5_gn_2_65020 Lactuca sativa HOM05D002472 ORTHO05D002827 1.4e-18 97.4 172 43.6
CDE10G0348 Ceratophyllum demersum HOM05D002472 ORTHO05D002827 2.5e-15 86.7 97 54.6
ECA238G2290 Erigeron canadensis HOM05D002472 ORTHO05D001990 2.5e-15 86.7 141 45.4
Eucgr.H04386 Eucalyptus grandis HOM05D002472 ORTHO05D002827 4.2e-15 85.9 142 43.7
C01p23920 Brassica napus HOM05D002472 ORTHO05D002827 5.5e-15 85.5 164 44.5
Psat3g008240 Pisum sativum HOM05D002472 ORTHO05D002827 2.1e-14 83.6 136 47.8
BcaC06g31949 Brassica carinata HOM05D002472 ORTHO05D002827 4.6e-14 82.4 135 50.4
COL.COLO4_15277 Corchorus olitorius HOM05D002472 ORTHO05D002827 4.6e-14 82.4 141 43.3
BolC1t02342H Brassica oleracea HOM05D002472 ORTHO05D002827 1.0e-13 81.3 167 43.1
BcaC09g50560 Brassica carinata HOM05D002472 ORTHO05D002827 1.4e-13 80.9 167 43.1
Lalb_Chr18g0045101 Lupinus albus HOM05D002472 ORTHO05D002827 2.0e-12 77.0 134 47.0
TAR142G0001 Trochodendron aralioides HOM05D002472 ORTHO05D002827 4.4e-12 75.9 147 38.8
COL.COLO4_15262 Corchorus olitorius HOM05D002472 ORTHO05D002827 5.7e-12 75.5 200 37.0
Zm00001eb217000 Zea mays HOM05D002472 ORTHO05D002827 1.3e-11 74.3 132 43.2
Pp3c9_18900 Physcomitrium patens HOM05D002472 ORTHO05D002827 1.7e-11 73.9 150 41.3
vmacro05069 Vaccinium macrocarpon HOM05D002472 ORTHO05D002827 3.7e-11 72.8 221 35.3
AagrBONN_evm.TU.Sc2ySwM_368.470 Anthoceros agrestis HOM05D002472 ORTHO05D002827 8.2e-11 71.6 127 42.5
COL.COLO4_15279 Corchorus olitorius HOM05D002472 ORTHO05D002827 1.2e-09 67.8 120 38.3
COL.COLO4_15281 Corchorus olitorius HOM05D002472 ORTHO05D002827 2.2e-08 63.5 128 41.4
MBI16_g16415_MAGBIO Magnolia biondii HOM05D002472 ORTHO05D002827 3.2e-07 59.7 92 48.9
Zm00001eb053770 Zea mays HOM05D002472 ORTHO05D002827 3.2e-07 59.7 129 40.3
TPR.G6975 Trifolium pratense HOM05D002472 ORTHO05D002827 7.2e-07 58.5 144 36.8
Medtr8g031500 Medicago truncatula HOM05D002472 ORTHO05D002827 2.1e-06 57.0 228 32.5
FAN13G0100 Fragaria x ananassa HOM05D002472 ORTHO05D002827 2.7e-06 56.6 59 59.3
Zm00001eb349380 Zea mays HOM05D002472 ORTHO05D002827 2.7e-06 56.6 116 41.4


User provided reference genes

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