Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C027259.2 Cucumis melo HOM05D000582 ORTHO05D000456 2.4e-23 111.3 55 100.0
MELO3C027538.2 Cucumis melo HOM05D000582 ORTHO05D000456 2.4e-23 111.3 55 100.0
MELO3C023799.2 Cucumis melo HOM05D006600 ORTHO05D168989 3.9e-18 94.0 55 85.5
CsaV3_1G040870 Cucumis sativus L. HOM05D000582 ORTHO05D000456 1.5e-17 92.0 55 83.6
MELO3C029299.2 Cucumis melo HOM05D000582 ORTHO05D000456 2.1e-16 88.2 55 80.0
Sed0007843 Sechium edule HOM05D000582 ORTHO05D000456 1.4e-15 85.5 55 76.4
QL11p000610 Quercus lobata HOM05D000582 ORTHO05D000456 5.0e-13 77.0 53 69.8
CANSAT56G4064 Cannabis sativa HOM05D000582 ORTHO05D000456 6.5e-13 76.6 53 69.8
CiPaw.04G144500 Carya illinoinensis HOM05D000582 ORTHO05D000456 8.4e-13 76.3 53 71.7
MELO3C024984.2 Cucumis melo HOM05D000582 ORTHO05D166929 1.9e-12 75.1 49 79.6
MD00G1142600 Malus domestica HOM05D000582 ORTHO05D000456 3.2e-12 74.3 53 69.8
Nitab4.5_0002008g0010 Nicotiana tabacum HOM05D000582 ORTHO05D000456 3.2e-12 74.3 53 66.0
Cfa003015 Carpinus fangiana HOM05D000582 ORTHO05D000456 4.2e-12 73.9 53 69.8
MD15G1216200 Malus domestica HOM05D000582 ORTHO05D000456 4.2e-12 73.9 53 67.9
CAN.G763.11 Capsicum annuum HOM05D000582 ORTHO05D000456 5.5e-12 73.6 53 64.2
COL.COLO4_18108 Corchorus olitorius HOM05D000582 ORTHO05D000456 5.5e-12 73.6 53 67.9
TPR.G9434 Trifolium pratense HOM05D000582 ORTHO05D000456 7.1e-12 73.2 53 66.0
Dinv42381 Davidia involucrata HOM05D000582 ORTHO05D000456 9.3e-12 72.8 53 66.0
Glyma.13G109700 Glycine max HOM05D000582 ORTHO05D000456 9.3e-12 72.8 53 66.0
Glyma.17G050000 Glycine max HOM05D000582 ORTHO05D000456 9.3e-12 72.8 53 66.0
QL11p000552 Quercus lobata HOM05D000582 ORTHO05D000456 1.2e-11 72.4 53 67.9
VMungo1215G2796 Vigna mungo HOM05D000582 ORTHO05D000456 1.2e-11 72.4 53 64.2
Haze_25989 Corylus avellana HOM05D000582 ORTHO05D000456 1.6e-11 72.0 53 67.9
Haze_25997 Corylus avellana HOM05D000582 ORTHO05D000456 1.6e-11 72.0 53 67.9
Gohir.A05G033500 Gossypium hirsutum HOM05D000582 ORTHO05D000456 1.6e-11 72.0 53 66.0
Oeu049130.1 Olea europaea HOM05D000582 ORTHO05D000456 1.6e-11 72.0 53 64.2
SGA_v2.0_scaffold308G48073 Striga asiatica HOM05D000582 ORTHO05D000456 1.6e-11 72.0 53 62.3
FAN28G0691 Fragaria x ananassa HOM05D000582 ORTHO05D000456 2.1e-11 71.6 53 64.2
Phvul.003G131600 Phaseolus vulgaris HOM05D000582 ORTHO05D000456 2.1e-11 71.6 53 64.2
PGSC0003DMG400030890 Solanum tuberosum HOM05D000582 ORTHO05D000456 2.1e-11 71.6 53 62.3
TAR383G0830 Trochodendron aralioides HOM05D000582 ORTHO05D000456 2.1e-11 71.6 53 66.0
Duzib150G1170 Durio zibethinus HOM05D000582 ORTHO05D000456 3.5e-11 70.9 53 64.2
Os08g0459600 Oryza sativa ssp. japonica HOM05D000582 ORTHO05D000456 3.5e-11 70.9 53 64.2
Peaxi162Scf00088g01322 Petunia axillaris HOM05D000582 ORTHO05D000456 3.5e-11 70.9 53 62.3
Sabra06G0111800 Salix brachista HOM05D000582 ORTHO05D000456 3.5e-11 70.9 53 66.0
Sabra06G0111900 Salix brachista HOM05D000582 ORTHO05D000456 3.5e-11 70.9 53 66.0
Solyc07g007870.3 Solanum lycopersicum HOM05D000582 ORTHO05D000456 3.5e-11 70.9 53 62.3
Zm00001eb177330 Zea mays HOM05D000582 ORTHO05D000456 3.5e-11 70.9 53 62.3
Dinv25564 Davidia involucrata HOM05D000582 ORTHO05D000456 4.6e-11 70.5 53 64.2
Oeu020556.1 Olea europaea HOM05D000582 ORTHO05D000456 4.6e-11 70.5 55 60.0
RcHm_v2.0_Chr2g0094641 Rosa chinensis HOM05D000582 ORTHO05D000456 4.6e-11 70.5 53 62.3
Zm00001eb040310 Zea mays HOM05D000582 ORTHO05D000456 4.6e-11 70.5 53 62.3
Gohir.D05G035000 Gossypium hirsutum HOM05D000582 ORTHO05D000456 6.1e-11 70.1 53 64.2
Gorai.009G035400 Gossypium raimondii HOM05D000582 ORTHO05D000456 6.1e-11 70.1 53 64.2
Potri.006G142800 Populus trichocarpa HOM05D000582 ORTHO05D000456 6.1e-11 70.1 53 66.0
Sabra18G0058200 Salix brachista HOM05D000582 ORTHO05D000456 6.1e-11 70.1 53 64.2
HPP92_016194 Vanilla planifolia HOM05D000582 ORTHO05D000456 6.1e-11 70.1 53 66.0
Gohir.D06G074800 Gossypium hirsutum HOM05D000582 ORTHO05D000456 7.9e-11 69.7 53 66.0
Gorai.010G087400 Gossypium raimondii HOM05D000582 ORTHO05D000456 7.9e-11 69.7 53 66.0
CDE11G0410 Ceratophyllum demersum HOM05D000582 ORTHO05D000456 1.0e-10 69.3 53 58.5
FvH4_1g08510 Fragaria vesca HOM05D000582 ORTHO05D000456 1.0e-10 69.3 53 62.3
FAN19G2034 Fragaria x ananassa HOM05D000582 ORTHO05D000456 1.0e-10 69.3 53 62.3
Cpa.g.sc28.58 Carica papaya HOM05D000582 ORTHO05D000456 1.3e-10 68.9 53 62.3
Aa31sc133G80 Aethionema arabicum HOM05D000582 ORTHO05D000456 1.8e-10 68.6 53 64.2
Lj7A686T68 Lonicera japonica HOM05D000582 ORTHO05D000456 1.8e-10 68.6 53 64.2
THA.LOC104826586 Tarenaya hassleriana HOM05D000582 ORTHO05D000456 1.8e-10 68.6 53 62.3
unitig_21.g20984 Utricularia gibba HOM05D000582 ORTHO05D000456 1.8e-10 68.6 55 58.2
Actinidia29925 Actinidia chinensis HOM05D000582 ORTHO05D000456 2.3e-10 68.2 53 64.2
AUR62025196 Chenopodium quinoa HOM05D000582 ORTHO05D000456 2.3e-10 68.2 53 60.4
Manes.03G039700 Manihot esculenta HOM05D000582 ORTHO05D000456 2.3e-10 68.2 53 66.0
Nitab4.5_0003393g0050 Nicotiana tabacum HOM05D000582 ORTHO05D000456 2.3e-10 68.2 53 62.3
Thecc.09G078600 Theobroma cacao HOM05D000582 ORTHO05D000456 2.3e-10 68.2 53 64.2
Carub.0003s2719 Capsella rubella HOM05D000582 ORTHO05D000456 3.0e-10 67.8 53 64.2
CDE05G0472 Ceratophyllum demersum HOM05D000582 ORTHO05D000456 3.0e-10 67.8 53 58.5
Duzib168G0256 Durio zibethinus HOM05D000582 ORTHO05D000456 3.0e-10 67.8 53 60.4
Hma1.2p1_0179F.1_g079590 Hydrangea macrophylla HOM05D000582 ORTHO05D000456 3.0e-10 67.8 52 65.4
Lj4g0021074 Lotus japonicus HOM05D000582 ORTHO05D000456 3.0e-10 67.8 53 60.4
Sopen07g003770 Solanum pennellii HOM05D000582 ORTHO05D000456 3.0e-10 67.8 53 60.4
FAN28G1583 Fragaria x ananassa HOM05D000582 ORTHO05D000456 3.9e-10 67.4 53 62.3
Glyma.17G049900 Glycine max HOM05D000582 ORTHO05D000456 3.9e-10 67.4 53 58.5
Potri.018G065600 Populus trichocarpa HOM05D000582 ORTHO05D000456 3.9e-10 67.4 53 62.3
ATR0598G172 Amborella trichopoda HOM05D000582 ORTHO05D000456 5.1e-10 67.0 53 62.3
AUR62028981 Chenopodium quinoa HOM05D000582 ORTHO05D000456 5.1e-10 67.0 53 60.4
Migut.J00934 Erythranthe guttata HOM05D000582 ORTHO05D000456 5.1e-10 67.0 53 58.5
FAN23G1766 Fragaria x ananassa HOM05D000582 ORTHO05D000456 5.1e-10 67.0 53 58.5
PSO135G0577 Papaver somniferum HOM05D000582 ORTHO05D000456 5.1e-10 67.0 53 64.2
PSO724G0476 Papaver somniferum HOM05D000582 ORTHO05D000456 5.1e-10 67.0 53 64.2
GSVIVG01015093001 Vitis vinifera HOM05D000582 ORTHO05D000456 5.1e-10 67.0 53 64.2
Actinidia38475 Actinidia chinensis HOM05D000582 ORTHO05D000456 6.7e-10 66.6 53 62.3
FvH4_1g08490 Fragaria vesca HOM05D000582 ORTHO05D000456 6.7e-10 66.6 53 60.4
FAN19G0992 Fragaria x ananassa HOM05D000582 ORTHO05D000456 6.7e-10 66.6 53 60.4
FAN19G2932 Fragaria x ananassa HOM05D000582 ORTHO05D000456 6.7e-10 66.6 53 60.4
RcHm_v2.0_Chr2g0094631 Rosa chinensis HOM05D000582 ORTHO05D000456 6.7e-10 66.6 53 58.5
SHI02937 Sapria himalayana HOM05D000582 ORTHO05D000456 8.7e-10 66.2 53 56.6
Cc06_g12110 Coffea canephora HOM05D000582 ORTHO05D000456 1.1e-09 65.9 54 64.8
SalBow6G3502 Salvia bowleyana HOM05D000582 ORTHO05D000456 1.1e-09 65.9 53 58.5
Glyma.13G109800 Glycine max HOM05D000582 ORTHO05D000456 1.5e-09 65.5 54 57.4
MBI13_g27163_MAGBIO Magnolia biondii HOM05D000582 ORTHO05D000456 1.5e-09 65.5 53 58.5
Phvul.003G131500 Phaseolus vulgaris HOM05D000582 ORTHO05D000456 1.5e-09 65.5 53 58.5
VMungo1215G2299 Vigna mungo HOM05D000582 ORTHO05D000456 1.5e-09 65.5 53 56.6
Eucgr.C00820 Eucalyptus grandis HOM05D000582 ORTHO05D000456 1.9e-09 65.1 53 56.6
Nn3g18245 Nelumbo nucifera HOM05D000582 ORTHO05D000456 1.9e-09 65.1 53 58.5
Hund26020 Selenicereus undatus HOM05D000582 ORTHO05D000456 1.9e-09 65.1 53 54.7
EL10Ac8g19104 Beta vulgaris HOM05D000582 ORTHO05D000456 2.5e-09 64.7 53 58.5
DCAR_028326 Daucus carota HOM05D000582 ORTHO05D000456 2.5e-09 64.7 53 58.5
PGR142G0262 Punica granatum HOM05D000582 ORTHO05D000456 2.5e-09 64.7 53 60.4
FAN26G2481 Fragaria x ananassa HOM05D000582 ORTHO05D000456 3.3e-09 64.3 53 58.5
Lsat_1_v5_gn_5_141041 Lactuca sativa HOM05D000582 ORTHO05D000456 3.3e-09 64.3 53 56.6
Lj4g0005894 Lotus japonicus HOM05D000582 ORTHO05D000456 3.3e-09 64.3 53 58.5
Medtr4g125470 Medicago truncatula HOM05D000582 ORTHO05D000456 3.3e-09 64.3 53 58.5
Sp3g24630 Schrenkiella parvula HOM05D000582 ORTHO05D000456 4.3e-09 63.9 53 62.3
CANSAT56G1045 Cannabis sativa HOM05D000582 ORTHO05D000456 5.7e-09 63.5 53 56.6
CANSAT56G2187 Cannabis sativa HOM05D000582 ORTHO05D000456 5.7e-09 63.5 53 56.6
MD12G1067300 Malus domestica HOM05D000582 ORTHO05D000456 5.7e-09 63.5 54 61.1
Prupe.7G200800 Prunus persica HOM05D000582 ORTHO05D000456 5.7e-09 63.5 53 62.3
CARHR103770 Cardamine hirsuta HOM05D000582 ORTHO05D000456 7.4e-09 63.2 53 62.3
arahy.Tifrunner.gnm1.ann1.HEV2WD Arachis hypogaea HOM05D000582 ORTHO05D000456 9.7e-09 62.8 53 58.5
MSTRG.6001 Avicennia marina HOM05D000582 ORTHO05D000456 9.7e-09 62.8 53 54.7
EL10Ac6g15197 Beta vulgaris HOM05D000582 ORTHO05D000456 9.7e-09 62.8 53 56.6
ECA234G0961 Erigeron canadensis HOM05D000582 ORTHO05D000456 9.7e-09 62.8 53 54.7
Hund16526 Selenicereus undatus HOM05D000582 ORTHO05D000456 9.7e-09 62.8 53 56.6
Thhalv10002563m.g Eutrema salsugineum HOM05D000582 ORTHO05D000456 1.3e-08 62.4 53 60.4
FAN26G1184 Fragaria x ananassa HOM05D000582 ORTHO05D000456 1.3e-08 62.4 53 56.6
FAN26G3356 Fragaria x ananassa HOM05D000582 ORTHO05D000456 1.3e-08 62.4 53 56.6
RcHm_v2.0_Chr7g0211621 Rosa chinensis HOM05D000582 ORTHO05D000456 1.3e-08 62.4 53 58.5
Psat4g017880 Pisum sativum HOM05D000582 ORTHO05D000456 1.6e-08 62.0 53 56.6
Hund26131 Selenicereus undatus HOM05D000582 ORTHO05D000456 1.6e-08 62.0 53 54.7
Aqoxy6G00619 Aquilegia oxysepala HOM05D000582 ORTHO05D000456 2.8e-08 61.2 53 56.6
HanXRQChr12g0354331 Helianthus annuus HOM05D000582 ORTHO05D000456 2.8e-08 61.2 53 52.8
BcaB08g34516 Brassica carinata HOM05D000582 ORTHO05D000456 3.7e-08 60.8 53 58.5
BcaC01g03142 Brassica carinata HOM05D000582 ORTHO05D000456 3.7e-08 60.8 53 58.5
C03p55640 Brassica napus HOM05D000582 ORTHO05D000456 3.7e-08 60.8 53 58.5
BolC3t17841H Brassica oleracea HOM05D000582 ORTHO05D000456 3.7e-08 60.8 53 58.5
AL3G43690 Arabidopsis lyrata HOM05D000582 ORTHO05D000456 4.8e-08 60.5 54 63.0
FvH4_1g08454 Fragaria vesca HOM05D000582 ORTHO05D000456 4.8e-08 60.5 53 54.7
Lalb_Chr07g0181131 Lupinus albus HOM05D000582 ORTHO05D000456 4.8e-08 60.5 53 52.8
TWI63G0064 Tripterygium wilfordii HOM05D000582 ORTHO05D000456 4.8e-08 60.5 53 58.5
Ah.03g139900 Amaranthus hybridus HOM05D000582 ORTHO05D000456 6.3e-08 60.1 53 52.8
AUR62003670 Chenopodium quinoa HOM05D000582 ORTHO05D000456 6.3e-08 60.1 53 50.9
AUR62017980 Chenopodium quinoa HOM05D000582 ORTHO05D000456 8.2e-08 59.7 53 54.7
Hund16525 Selenicereus undatus HOM05D000582 ORTHO05D000456 8.2e-08 59.7 53 50.9
TWI34G1425 Tripterygium wilfordii HOM05D000582 ORTHO05D000456 8.2e-08 59.7 53 56.6
FvH4_1g08453 Fragaria vesca HOM05D000582 ORTHO05D000456 1.1e-07 59.3 53 54.7
FAN19G0882 Fragaria x ananassa HOM05D000582 ORTHO05D000456 1.1e-07 59.3 53 54.7
THA.LOC104808886 Tarenaya hassleriana HOM05D000582 ORTHO05D000456 1.1e-07 59.3 53 58.5
Rhsim03G0228600 Rhododendron simsii HOM05D000582 ORTHO05D000456 1.8e-07 58.5 53 58.5
THA.LOC104808887 Tarenaya hassleriana HOM05D000582 ORTHO05D000456 1.8e-07 58.5 53 60.4
Lalb_Chr07g0190611 Lupinus albus HOM05D000582 ORTHO05D000456 2.4e-07 58.2 53 56.6
AT2G06050 Arabidopsis thaliana HOM05D000582 ORTHO05D000456 3.1e-07 57.8 54 61.1
A03p44790 Brassica napus HOM05D000582 ORTHO05D000456 3.1e-07 57.8 53 56.6
BraA03t13614Z Brassica rapa HOM05D000582 ORTHO05D000456 3.1e-07 57.8 53 56.6
HanXRQChr10g0319681 Helianthus annuus HOM05D000582 ORTHO05D000456 5.3e-07 57.0 53 47.2
Lalb_Chr13g0299481 Lupinus albus HOM05D000582 ORTHO05D000456 6.9e-07 56.6 53 56.6
Potri.004G212100 Populus trichocarpa HOM05D000582 ORTHO05D000456 9.0e-07 56.2 52 57.7
Sc03g0000400 Simmondsia chinensis HOM05D000582 ORTHO05D000456 1.2e-06 55.8 53 47.2
AUR62025200 Chenopodium quinoa HOM05D000582 ORTHO05D000456 2.0e-06 55.1 53 54.7
vmacro06331 Vaccinium macrocarpon HOM05D000582 ORTHO05D000456 3.4e-06 54.3 53 56.6
ATR0789G077 Amborella trichopoda HOM05D000582 ORTHO05D000456 7.7e-06 53.1 54 48.1
AUR62017979 Chenopodium quinoa HOM05D000582 ORTHO05D000456 7.7e-06 53.1 53 47.2
Eucgr.L03450 Eucalyptus grandis HOM05D000582 ORTHO05D000456 7.7e-06 53.1 53 49.1


User provided reference genes

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