Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C027203.2 Cucumis melo HOM05D001917 ORTHO05D002790 1.6e-58 229.2 113 100.0
MELO3C017866.2 Cucumis melo HOM05D001917 ORTHO05D002790 7.7e-45 183.7 96 92.7
CsaV3_5G029950 Cucumis sativus L. HOM05D001917 ORTHO05D002790 7.7e-37 157.1 107 77.6
MELO3C011839.2 Cucumis melo HOM05D001917 ORTHO05D002790 5.0e-28 127.9 90 74.4
ClCG11G013420 Citrullus lanatus HOM05D001917 ORTHO05D002790 8.6e-28 127.1 97 70.1
Sed0000104 Sechium edule HOM05D001917 ORTHO05D002790 8.0e-18 94.0 92 60.9
Cfa005489 Carpinus fangiana HOM05D001917 ORTHO05D002790 2.0e-16 89.4 90 54.4
Gohir.A03G192700 Gossypium hirsutum HOM05D001917 ORTHO05D002790 2.0e-16 89.4 90 52.2
Haze_01816 Corylus avellana HOM05D001917 ORTHO05D002790 5.8e-16 87.8 90 53.3
Gorai.005G241600 Gossypium raimondii HOM05D001917 ORTHO05D002790 5.8e-16 87.8 90 52.2
Gohir.A13G036500 Gossypium hirsutum HOM05D001917 ORTHO05D002790 1.3e-15 86.7 90 51.1
Gohir.D13G034800 Gossypium hirsutum HOM05D001917 ORTHO05D002790 2.2e-15 85.9 90 51.1
Gorai.013G039300 Gossypium raimondii HOM05D001917 ORTHO05D002790 2.2e-15 85.9 90 51.1
Thecc.02G090500 Theobroma cacao HOM05D001917 ORTHO05D002790 2.2e-15 85.9 90 51.1
Duzib248G0928 Durio zibethinus HOM05D001917 ORTHO05D002790 4.9e-15 84.7 90 51.1
Gohir.D02G213700 Gossypium hirsutum HOM05D001917 ORTHO05D002790 4.9e-15 84.7 90 51.1
Sed0027953 Sechium edule HOM05D001917 ORTHO05D002790 6.4e-15 84.3 66 65.2
FvH4_5g28730 Fragaria vesca HOM05D001917 ORTHO05D002790 8.3e-15 84.0 90 50.0
CsaV3_3G019270 Cucumis sativus L. HOM05D001917 ORTHO05D002790 1.4e-14 83.2 67 61.2
Manes.07G020400 Manihot esculenta HOM05D001917 ORTHO05D002790 1.4e-14 83.2 90 51.1
RcHm_v2.0_Chr7g0220891 Rosa chinensis HOM05D001917 ORTHO05D002790 1.4e-14 83.2 90 50.0
arahy.Tifrunner.gnm1.ann1.900H0A Arachis hypogaea HOM05D001917 ORTHO05D002790 1.9e-14 82.8 90 52.2
FAN18G1669 Fragaria x ananassa HOM05D001917 ORTHO05D002790 1.9e-14 82.8 90 50.0
CiPaw.05G050800 Carya illinoinensis HOM05D001917 ORTHO05D002790 2.4e-14 82.4 90 47.8
Ciclev10001528m.g Citrus clementina HOM05D001917 ORTHO05D002790 2.4e-14 82.4 90 51.1
Duzib052G0052 Durio zibethinus HOM05D001917 ORTHO05D002790 2.4e-14 82.4 90 50.0
Sed0027900 Sechium edule HOM05D001917 ORTHO05D002790 2.4e-14 82.4 67 64.2
COL.COLO4_11754 Corchorus olitorius HOM05D001917 ORTHO05D002790 3.2e-14 82.0 90 48.9
Manes.10G123800 Manihot esculenta HOM05D001917 ORTHO05D002790 3.2e-14 82.0 90 50.0
arahy.Tifrunner.gnm1.ann1.ICMC1Y Arachis hypogaea HOM05D001917 ORTHO05D002790 4.1e-14 81.6 91 48.4
Duzib132G0781 Durio zibethinus HOM05D001917 ORTHO05D002790 4.1e-14 81.6 90 51.1
ClCG05G009440 Citrullus lanatus HOM05D001917 ORTHO05D002790 5.4e-14 81.3 67 61.2
MELO3C019429.2 Cucumis melo HOM05D001917 ORTHO05D002790 5.4e-14 81.3 67 61.2
FAN13G3267 Fragaria x ananassa HOM05D001917 ORTHO05D002790 7.0e-14 80.9 90 48.9
Potri.003G014800 Populus trichocarpa HOM05D001917 ORTHO05D002790 9.2e-14 80.5 90 47.8
Lalb_Chr12g0204531 Lupinus albus HOM05D001917 ORTHO05D002790 1.2e-13 80.1 91 48.4
MD08G1238800 Malus domestica HOM05D001917 ORTHO05D002790 1.2e-13 80.1 90 48.9
QL02p099840 Quercus lobata HOM05D001917 ORTHO05D002790 1.2e-13 80.1 90 50.0
Sabra03G0007900 Salix brachista HOM05D001917 ORTHO05D002790 1.2e-13 80.1 96 45.8
GSVIVG01023292001 Vitis vinifera HOM05D001917 ORTHO05D002790 1.2e-13 80.1 91 50.5
Eucgr.I02749 Eucalyptus grandis HOM05D001917 ORTHO05D002790 1.6e-13 79.7 67 59.7
MD15G1430600 Malus domestica HOM05D001917 ORTHO05D002790 1.6e-13 79.7 90 48.9
Potri.004G219100 Populus trichocarpa HOM05D001917 ORTHO05D002790 1.6e-13 79.7 90 48.9
CANSAT11G0170 Cannabis sativa HOM05D001917 ORTHO05D002790 2.0e-13 79.3 90 48.9
Phvul.002G248500 Phaseolus vulgaris HOM05D001917 ORTHO05D002790 2.0e-13 79.3 90 48.9
TWI59G0573 Tripterygium wilfordii HOM05D001917 ORTHO05D002790 2.7e-13 79.0 90 48.9
arahy.Tifrunner.gnm1.ann1.AY0SR4 Arachis hypogaea HOM05D001917 ORTHO05D002790 3.5e-13 78.6 90 50.0
Lalb_Chr15g0090721 Lupinus albus HOM05D001917 ORTHO05D002790 4.6e-13 78.2 67 58.2
Glyma.08G126500 Glycine max HOM05D001917 ORTHO05D002790 6.0e-13 77.8 90 47.8
CiPaw.06G144000 Carya illinoinensis HOM05D001917 ORTHO05D002790 7.8e-13 77.4 90 47.8
Glyma.05G168100 Glycine max HOM05D001917 ORTHO05D002790 7.8e-13 77.4 90 47.8
PGR042G1770 Punica granatum HOM05D001917 ORTHO05D002790 7.8e-13 77.4 90 47.8
THA.LOC104801421 Tarenaya hassleriana HOM05D001917 ORTHO05D002790 7.8e-13 77.4 90 47.8
TWI14G0546 Tripterygium wilfordii HOM05D001917 ORTHO05D002790 7.8e-13 77.4 90 46.7
Hma1.2p1_1108F.1_g257810 Hydrangea macrophylla HOM05D001917 ORTHO05D002790 1.0e-12 77.0 90 47.8
arahy.Tifrunner.gnm1.ann1.BCF1Q0 Arachis hypogaea HOM05D001917 ORTHO05D002790 1.3e-12 76.6 91 47.3
TWI23G0075 Tripterygium wilfordii HOM05D001917 ORTHO05D002790 1.3e-12 76.6 90 47.8
Lalb_Chr07g0185821 Lupinus albus HOM05D001917 ORTHO05D002790 1.7e-12 76.3 90 47.8
Prupe.1G575800 Prunus persica HOM05D001917 ORTHO05D002790 1.7e-12 76.3 90 48.9
Dinv19392 Davidia involucrata HOM05D001917 ORTHO05D002790 2.3e-12 75.9 90 45.6
Gohir.D04G163400 Gossypium hirsutum HOM05D001917 ORTHO05D002790 2.3e-12 75.9 90 44.4
Gorai.012G151300 Gossypium raimondii HOM05D001917 ORTHO05D002790 5.0e-12 74.7 90 44.4
Hma1.2p1_1928F.1_g307820 Hydrangea macrophylla HOM05D001917 ORTHO05D002790 5.0e-12 74.7 90 47.8
Lj5A255T86 Lonicera japonica HOM05D001917 ORTHO05D002790 5.0e-12 74.7 93 45.2
CSS0018654 Camellia sinensis var. sinensis HOM05D001917 ORTHO05D002790 6.6e-12 74.3 90 44.4
Lalb_Chr13g0295631 Lupinus albus HOM05D001917 ORTHO05D002790 6.6e-12 74.3 90 46.7
Ca_17835_v3 Cicer arietinum L. HOM05D001917 ORTHO05D002790 2.5e-11 72.4 92 46.7
DCAR_029264 Daucus carota HOM05D001917 ORTHO05D002790 2.5e-11 72.4 90 44.4
Lj4g0019684 Lotus japonicus HOM05D001917 ORTHO05D002790 3.3e-11 72.0 90 46.7
Sopen01g046280 Solanum pennellii HOM05D001917 ORTHO05D002790 4.3e-11 71.6 91 42.9
AL6G41210 Arabidopsis lyrata HOM05D001917 ORTHO05D002790 5.6e-11 71.2 90 45.6
TPR.G6809 Trifolium pratense HOM05D001917 ORTHO05D002790 5.6e-11 71.2 94 45.7
Actinidia26159 Actinidia chinensis HOM05D001917 ORTHO05D002790 7.3e-11 70.9 66 53.0
CSS0018911 Camellia sinensis var. sinensis HOM05D001917 ORTHO05D002790 7.3e-11 70.9 90 45.6
VMungo0251G2048 Vigna mungo HOM05D001917 ORTHO05D002790 7.3e-11 70.9 68 54.4
Atru.chr6.697 Acer truncatum HOM05D001917 ORTHO05D002790 2.1e-10 69.3 66 56.1
Medtr8g088650 Medicago truncatula HOM05D001917 ORTHO05D002790 2.1e-10 69.3 92 44.6
Nitab4.5_0002698g0070 Nicotiana tabacum HOM05D001917 ORTHO05D002790 2.1e-10 69.3 92 41.3
Solyc01g103873.1 Solanum lycopersicum HOM05D001917 ORTHO05D002790 2.8e-10 68.9 91 41.8
Sopen01g046250 Solanum pennellii HOM05D001917 ORTHO05D002790 2.8e-10 68.9 91 41.8
Actinidia06466 Actinidia chinensis HOM05D001917 ORTHO05D002790 3.6e-10 68.6 66 51.5
AT4G06598 Arabidopsis thaliana HOM05D001917 ORTHO05D002790 4.7e-10 68.2 90 44.4
SalBow3G3660 Salvia bowleyana HOM05D001917 ORTHO05D002790 4.7e-10 68.2 90 42.2
Eucgr.G00399 Eucalyptus grandis HOM05D001917 ORTHO05D002790 8.1e-10 67.4 66 56.1
Peaxi162Scf00011g00747 Petunia axillaris HOM05D001917 ORTHO05D002790 8.1e-10 67.4 91 39.6
PGR142G3237 Punica granatum HOM05D001917 ORTHO05D002790 8.1e-10 67.4 92 44.6
THA.LOC104823694 Tarenaya hassleriana HOM05D001917 ORTHO05D002790 1.4e-09 66.6 66 51.5
THA.LOC104820215 Tarenaya hassleriana HOM05D001917 ORTHO05D002790 1.8e-09 66.2 66 51.5
vmacro01735 Vaccinium macrocarpon HOM05D001917 ORTHO05D002790 2.3e-09 65.9 90 43.3
vmacro19875 Vaccinium macrocarpon HOM05D001917 ORTHO05D002790 2.3e-09 65.9 90 40.0
Cpa.g.sc38.34 Carica papaya HOM05D001917 ORTHO05D002790 3.1e-09 65.5 90 45.6
Gohir.D12G026800 Gossypium hirsutum HOM05D001917 ORTHO05D002790 3.1e-09 65.5 66 54.5
Gorai.008G027200 Gossypium raimondii HOM05D001917 ORTHO05D002790 3.1e-09 65.5 66 54.5
Nn3g18937 Nelumbo nucifera HOM05D001917 ORTHO05D002790 3.1e-09 65.5 90 42.2
TAR628G0141 Trochodendron aralioides HOM05D001917 ORTHO05D002790 3.1e-09 65.5 90 42.2
MSTRG.16506 Avicennia marina HOM05D001917 ORTHO05D002790 4.0e-09 65.1 90 44.4
Lj9C301T8 Lonicera japonica HOM05D001917 ORTHO05D002790 4.0e-09 65.1 90 41.1
Carub.0006s2629 Capsella rubella HOM05D001917 ORTHO05D002790 5.2e-09 64.7 90 43.3
DCAR_006686 Daucus carota HOM05D001917 ORTHO05D002790 5.2e-09 64.7 90 41.1
Gohir.D04G163200 Gossypium hirsutum HOM05D001917 ORTHO05D002790 5.2e-09 64.7 75 44.0
THA.LOC104807120 Tarenaya hassleriana HOM05D001917 ORTHO05D002790 5.2e-09 64.7 67 53.7
TAR381G1439 Trochodendron aralioides HOM05D001917 ORTHO05D002790 8.9e-09 63.9 90 42.2
AUR62011669 Chenopodium quinoa HOM05D001917 ORTHO05D002790 2.0e-08 62.8 67 49.3
AUR62016492 Chenopodium quinoa HOM05D001917 ORTHO05D002790 2.0e-08 62.8 67 49.3
DCAR_001831 Daucus carota HOM05D001917 ORTHO05D002790 2.0e-08 62.8 67 49.3
CAN.G798.33 Capsicum annuum HOM05D001917 ORTHO05D002790 2.6e-08 62.4 91 38.5
Nitab4.5_0008098g0040 Nicotiana tabacum HOM05D001917 ORTHO05D002790 2.6e-08 62.4 93 40.9
CARHR287320 Cardamine hirsuta HOM05D001917 ORTHO05D002790 3.4e-08 62.0 90 42.2
ECA236G0104 Erigeron canadensis HOM05D001917 ORTHO05D002790 3.4e-08 62.0 90 42.2
Gohir.A04G121926 Gossypium hirsutum HOM05D001917 ORTHO05D002790 3.4e-08 62.0 92 39.1
Sc07g0005000 Simmondsia chinensis HOM05D001917 ORTHO05D002790 3.4e-08 62.0 67 44.8
MSTRG.5118 Avicennia marina HOM05D001917 ORTHO05D002790 4.4e-08 61.6 90 43.3
CARHR053940 Cardamine hirsuta HOM05D001917 ORTHO05D002790 4.4e-08 61.6 66 50.0
Hund12943 Selenicereus undatus HOM05D001917 ORTHO05D002790 7.5e-08 60.8 67 49.3
Ah.01g021660 Amaranthus hybridus HOM05D001917 ORTHO05D002790 9.9e-08 60.5 67 47.8
EL10Ac9g22036 Beta vulgaris HOM05D001917 ORTHO05D002790 9.9e-08 60.5 67 47.8
HanXRQChr06g0181281 Helianthus annuus HOM05D001917 ORTHO05D002790 1.7e-07 59.7 81 40.7
Migut.N00836 Erythranthe guttata HOM05D001917 ORTHO05D002790 2.2e-07 59.3 90 38.9
MBI03_g13496_MAGBIO Magnolia biondii HOM05D001917 ORTHO05D002790 2.2e-07 59.3 90 40.0
Solyc01g103875.1 Solanum lycopersicum HOM05D001917 ORTHO05D002790 2.9e-07 58.9 79 39.2
Peaxi162Scf00003g03938 Petunia axillaris HOM05D001917 ORTHO05D002790 3.7e-07 58.5 90 40.0
Aa31LG2G10980 Aethionema arabicum HOM05D001917 ORTHO05D002790 4.9e-07 58.2 68 45.6
AL2G18070 Arabidopsis lyrata HOM05D001917 ORTHO05D002790 8.3e-07 57.4 66 47.0
AT1G58110 Arabidopsis thaliana HOM05D001917 ORTHO05D002790 1.1e-06 57.0 66 47.0
Nitab4.5_0000548g0190 Nicotiana tabacum HOM05D001917 ORTHO05D002790 1.1e-06 57.0 91 39.6
Nitab4.5_0000667g0140 Nicotiana tabacum HOM05D001917 ORTHO05D002790 1.1e-06 57.0 83 39.8
PGSC0003DMG401024930 Solanum tuberosum HOM05D001917 ORTHO05D002790 1.1e-06 57.0 79 38.0
Gohir.A12G027400 Gossypium hirsutum HOM05D001917 ORTHO05D002790 2.4e-06 55.8 59 50.8
Lsat_1_v5_gn_7_79240 Lactuca sativa HOM05D001917 ORTHO05D002790 2.4e-06 55.8 90 40.0
Aqoxy2G03360 Aquilegia oxysepala HOM05D001917 ORTHO05D002790 5.4e-06 54.7 91 39.6
Carub.0002s0651 Capsella rubella HOM05D001917 ORTHO05D002790 5.4e-06 54.7 66 43.9
Thhalv10023536m.g Eutrema salsugineum HOM05D001917 ORTHO05D002790 7.1e-06 54.3 66 45.5
HanXRQChr17g0551161 Helianthus annuus HOM05D001917 ORTHO05D002790 9.2e-06 53.9 57 49.1
Oeu023417.1 Olea europaea HOM05D001917 ORTHO05D002790 9.2e-06 53.9 78 38.5
SGA_v2.0_scaffold338G49225 Striga asiatica HOM05D001917 ORTHO05D002790 9.2e-06 53.9 68 45.6


User provided reference genes

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