Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 5.3e-68 260.8 120 100.0
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 1.3e-66 256.1 119 98.3
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.5e-62 242.7 119 89.1
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 2.4e-60 235.3 119 86.6
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 2.6e-59 231.9 119 85.7
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 3.4e-59 231.5 119 85.7
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 4.5e-59 231.1 119 85.7
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 5.8e-59 230.7 119 85.7
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 5.8e-59 230.7 119 83.2
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 7.6e-59 230.3 119 84.9
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.0e-58 229.9 119 84.0
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.3e-58 229.6 119 84.9
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 1.7e-58 229.2 119 85.7
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.2e-58 228.8 119 84.0
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.2e-58 228.8 119 84.0
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 6.5e-58 227.3 119 83.2
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 6.5e-58 227.3 119 83.2
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 6.5e-58 227.3 119 82.4
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 8.4e-58 226.9 119 84.0
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 1.1e-57 226.5 119 84.0
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.1e-57 226.5 119 84.0
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 1.4e-57 226.1 119 81.5
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 1.4e-57 226.1 119 81.5
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 2.5e-57 225.3 119 83.2
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 2.5e-57 225.3 119 82.4
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 2.5e-57 225.3 119 83.2
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 3.2e-57 224.9 119 84.0
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 3.2e-57 224.9 119 83.2
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 3.2e-57 224.9 119 82.4
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 3.2e-57 224.9 119 81.5
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 3.2e-57 224.9 119 81.5
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.2e-57 224.9 119 81.5
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 3.2e-57 224.9 119 82.4
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 4.2e-57 224.6 119 83.2
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 4.2e-57 224.6 119 82.4
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 4.2e-57 224.6 119 82.4
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 4.2e-57 224.6 119 81.5
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 5.5e-57 224.2 119 82.4
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 7.1e-57 223.8 119 83.2
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 7.1e-57 223.8 119 83.2
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 7.1e-57 223.8 119 83.2
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 9.3e-57 223.4 119 81.5
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 9.3e-57 223.4 119 82.4
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 9.3e-57 223.4 119 79.8
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 1.2e-56 223.0 119 82.4
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.6e-56 222.6 119 82.4
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 1.6e-56 222.6 120 83.3
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 1.6e-56 222.6 119 80.7
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.1e-56 222.2 119 80.7
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.1e-56 222.2 119 80.7
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 2.1e-56 222.2 119 81.5
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 2.7e-56 221.9 119 79.8
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 4.6e-56 221.1 119 82.4
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 6.0e-56 220.7 119 79.8
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 6.0e-56 220.7 119 79.8
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 6.0e-56 220.7 119 82.4
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 1.3e-55 219.5 119 82.4
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 1.3e-55 219.5 119 79.8
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.8e-55 219.2 120 82.5
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 2.3e-55 218.8 119 79.0
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 2.3e-55 218.8 119 80.7
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 2.3e-55 218.8 119 80.7
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 3.9e-55 218.0 119 78.2
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.9e-55 218.0 120 81.7
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 3.9e-55 218.0 119 81.5
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 6.7e-55 217.2 119 78.2
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 6.7e-55 217.2 119 79.0
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 6.7e-55 217.2 119 80.7
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 8.7e-55 216.9 119 79.0
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.1e-54 216.5 119 80.7
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 1.1e-54 216.5 119 80.7
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 1.9e-54 215.7 119 77.3
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 2.5e-54 215.3 119 78.2
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.7e-54 214.2 120 80.8
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 5.7e-54 214.2 119 78.2
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 1.3e-53 213.0 115 80.9
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 8.2e-53 210.3 119 79.8
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 8.2e-53 210.3 119 76.5
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 1.1e-52 209.9 118 76.3
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.4e-52 209.5 119 78.2
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.4e-52 209.5 119 74.8
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.8e-52 209.1 118 76.3
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 1.8e-52 209.1 118 76.3
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 4.1e-52 208.0 118 75.4
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 4.1e-52 208.0 119 76.5
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 9.0e-52 206.8 119 77.3
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 9.0e-52 206.8 119 78.2
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.2e-51 206.5 119 77.3
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 1.2e-51 206.5 118 75.4
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 2.0e-51 205.7 119 73.9
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 3.4e-51 204.9 145 66.2
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 3.4e-51 204.9 119 73.9
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 5.9e-51 204.1 118 73.7
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 7.7e-51 203.8 144 67.4
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 2.2e-50 202.2 119 72.3
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 2.9e-50 201.8 118 72.9
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 2.9e-50 201.8 118 72.9
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 5.0e-50 201.1 118 72.9
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 6.5e-50 200.7 118 72.9
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 6.5e-50 200.7 118 72.9
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.1e-49 199.9 118 72.9
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.1e-49 199.9 117 73.5
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.4e-49 199.5 118 72.0
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 1.9e-49 199.1 118 72.0
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 1.9e-49 199.1 118 72.0
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 1.9e-49 199.1 118 72.0
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 5.5e-49 197.6 119 72.3
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 1.2e-48 196.4 118 73.7
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.0e-47 193.4 119 70.6
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.0e-47 193.4 119 68.1
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.0e-47 193.4 119 68.1
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 1.8e-47 192.6 119 68.9
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.3e-45 186.4 120 66.7
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 2.4e-44 182.2 119 64.7
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 6.9e-44 180.6 119 66.4
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 3.8e-42 174.9 126 65.1
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 5.0e-42 174.5 125 64.8
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 1.6e-40 169.5 96 79.2
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 4.7e-40 167.9 136 60.3
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.8e-39 166.0 96 75.0
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 2.6e-35 152.1 119 52.9
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 2.6e-35 152.1 87 77.0
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 4.5e-35 151.4 99 67.7
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.7e-34 149.4 119 54.6
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 2.2e-34 149.1 68 91.2
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 2.7e-32 142.1 71 91.5
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 2.7e-32 142.1 150 52.0
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 2.7e-32 142.1 65 90.8
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.0e-31 140.2 105 66.7
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.8e-31 139.4 154 53.9
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 1.5e-30 136.3 84 73.8
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.1e-28 128.6 195 40.5
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 2.6e-27 125.6 85 63.5
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 8.5e-26 120.6 104 58.7
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 2.7e-24 115.5 134 44.8
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 2.7e-24 115.5 91 56.0
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 2.2e-18 95.9 98 48.0
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 7.2e-17 90.9 55 67.3
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 7.5e-14 80.9 56 66.1
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 1.8e-12 76.3 36 83.3
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 9.1e-12 73.9 36 83.3
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 3.3e-09 65.5 36 77.8


User provided reference genes

Program Settings