Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026968.2 Cucumis melo HOM05D006899 ORTHO05D008566 5.8e-93 344.4 191 100.0
CsaV3_4G031920 Cucumis sativus L. HOM05D006899 ORTHO05D008566 6.0e-90 334.3 191 94.2
Sed0025977 Sechium edule HOM05D006899 ORTHO05D008566 1.9e-72 276.2 192 82.8
ClCG11G016470 Citrullus lanatus HOM05D006899 ORTHO05D008566 4.8e-71 271.6 194 82.0
Peaxi162Scf00111g00221 Petunia axillaris HOM05D006899 ORTHO05D008566 4.0e-54 215.3 149 79.9
QL08p044873 Quercus lobata HOM05D006899 ORTHO05D008566 7.6e-53 211.1 190 67.4
Cfa023072 Carpinus fangiana HOM05D006899 ORTHO05D008566 2.2e-52 209.5 151 75.5
Nitab4.5_0001883g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.9e-52 209.1 165 72.7
Nitab4.5_0002251g0050 Nicotiana tabacum HOM05D006899 ORTHO05D008566 3.8e-52 208.8 151 76.8
Sopen07g029600 Solanum pennellii HOM05D006899 ORTHO05D008566 1.4e-51 206.8 155 75.5
PGSC0003DMG400017304 Solanum tuberosum HOM05D006899 ORTHO05D008566 1.4e-51 206.8 155 75.5
Gohir.A07G080700 Gossypium hirsutum HOM05D006899 ORTHO05D008566 9.3e-51 204.1 168 72.0
Gorai.001G092300 Gossypium raimondii HOM05D006899 ORTHO05D008566 1.6e-50 203.4 157 72.6
Solyc07g056240.3 Solanum lycopersicum HOM05D006899 ORTHO05D008566 2.7e-50 202.6 155 73.5
Gohir.D07G086300 Gossypium hirsutum HOM05D006899 ORTHO05D008566 3.5e-50 202.2 154 72.7
Oeu020934.1 Olea europaea HOM05D006899 ORTHO05D008566 7.9e-50 201.1 165 70.9
Rhsim04G0081600 Rhododendron simsii HOM05D006899 ORTHO05D008566 1.0e-49 200.7 193 67.4
Thecc.01G170200 Theobroma cacao HOM05D006899 ORTHO05D008566 2.3e-49 199.5 185 67.0
COL.COLO4_08896 Corchorus olitorius HOM05D006899 ORTHO05D008566 3.0e-49 199.1 199 66.8
Oeu013822.1 Olea europaea HOM05D006899 ORTHO05D008566 5.1e-49 198.4 166 69.3
LjContig00049g0021241 Lotus japonicus HOM05D006899 ORTHO05D008566 1.5e-48 196.8 156 69.2
PGR042G1005 Punica granatum HOM05D006899 ORTHO05D008566 1.5e-48 196.8 194 64.4
Phvul.008G193700 Phaseolus vulgaris HOM05D006899 ORTHO05D008566 2.5e-48 196.1 159 69.2
Potri.002G058000 Populus trichocarpa HOM05D006899 ORTHO05D008566 9.6e-48 194.1 159 69.8
Haze_13530 Corylus avellana HOM05D006899 ORTHO05D008566 1.3e-47 193.7 184 62.5
Atru.chr6.2058 Acer truncatum HOM05D006899 ORTHO05D008566 2.1e-47 193.0 191 62.3
CiPaw.04G138700 Carya illinoinensis HOM05D006899 ORTHO05D008566 2.8e-47 192.6 195 60.5
Cpa.g.sc50.104 Carica papaya HOM05D006899 ORTHO05D008566 8.2e-47 191.0 122 81.1
VMungo0647G1903 Vigna mungo HOM05D006899 ORTHO05D008566 8.2e-47 191.0 159 68.6
Prupe.3G176400 Prunus persica HOM05D006899 ORTHO05D008566 1.4e-46 190.3 158 71.5
vmacro09192 Vaccinium macrocarpon HOM05D006899 ORTHO05D008566 1.4e-46 190.3 150 72.0
Ciclev10032884m.g Citrus clementina HOM05D006899 ORTHO05D008566 1.8e-46 189.9 119 82.4
CANSAT64G2357 Cannabis sativa HOM05D006899 ORTHO05D008566 2.4e-46 189.5 164 67.7
Glyma.02G285100 Glycine max HOM05D006899 ORTHO05D008566 2.4e-46 189.5 158 67.7
Medtr5g091190 Medicago truncatula HOM05D006899 ORTHO05D008566 2.4e-46 189.5 167 65.9
Potri.005G204200 Populus trichocarpa HOM05D006899 ORTHO05D008566 3.1e-46 189.1 158 69.6
GSVIVG01020847001 Vitis vinifera HOM05D006899 ORTHO05D008566 3.1e-46 189.1 157 72.6
MSTRG.12841 Avicennia marina HOM05D006899 ORTHO05D008566 4.1e-46 188.7 144 74.3
Glyma.14G029700 Glycine max HOM05D006899 ORTHO05D008566 6.9e-46 188.0 158 68.4
Nn4g26539 Nelumbo nucifera HOM05D006899 ORTHO05D008566 6.9e-46 188.0 165 69.1
Actinidia03641 Actinidia chinensis HOM05D006899 ORTHO05D008566 1.2e-45 187.2 125 80.8
TPR.G12679 Trifolium pratense HOM05D006899 ORTHO05D008566 1.5e-45 186.8 151 68.2
Aa31LG1G24750 Aethionema arabicum HOM05D006899 ORTHO05D008566 4.5e-45 185.3 193 60.6
RcHm_v2.0_Chr2g0151981 Rosa chinensis HOM05D006899 ORTHO05D008566 4.5e-45 185.3 180 63.9
Manes.10G088300 Manihot esculenta HOM05D006899 ORTHO05D008566 1.0e-44 184.1 163 68.1
Cc05_g09700 Coffea canephora HOM05D006899 ORTHO05D008566 1.7e-44 183.3 149 72.5
TAR627G0648 Trochodendron aralioides HOM05D006899 ORTHO05D008566 1.7e-44 183.3 154 65.6
SalBow7G1887 Salvia bowleyana HOM05D006899 ORTHO05D008566 3.8e-44 182.2 144 71.5
Duzib138G0065 Durio zibethinus HOM05D006899 ORTHO05D008566 5.0e-44 181.8 144 73.6
MD09G1149700 Malus domestica HOM05D006899 ORTHO05D008566 6.5e-44 181.4 143 73.4
Eucgr.A02015 Eucalyptus grandis HOM05D006899 ORTHO05D008566 8.5e-44 181.0 168 69.0
Sc13g0007020 Simmondsia chinensis HOM05D006899 ORTHO05D008566 8.5e-44 181.0 164 65.9
SGA_v2.0_scaffold4G02123 Striga asiatica HOM05D006899 ORTHO05D008566 8.5e-44 181.0 154 68.2
arahy.Tifrunner.gnm1.ann1.226PX6 Arachis hypogaea HOM05D006899 ORTHO05D008566 1.1e-43 180.6 160 68.1
Sabra02G0047300 Salix brachista HOM05D006899 ORTHO05D008566 1.1e-43 180.6 152 69.7
TWI59G0652 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 1.1e-43 180.6 185 63.2
arahy.Tifrunner.gnm1.ann1.SNQ1P9 Arachis hypogaea HOM05D006899 ORTHO05D008566 1.4e-43 180.3 153 69.3
FAN09G4704 Fragaria x ananassa HOM05D006899 ORTHO05D008566 3.2e-43 179.1 177 62.7
FvH4_6g38570 Fragaria vesca HOM05D006899 ORTHO05D008566 7.2e-43 177.9 177 62.1
Hund24233 Selenicereus undatus HOM05D006899 ORTHO05D008566 1.2e-42 177.2 160 67.5
MD17G1136600 Malus domestica HOM05D006899 ORTHO05D008566 2.1e-42 176.4 143 71.3
FAN05G4631 Fragaria x ananassa HOM05D006899 ORTHO05D008566 2.7e-42 176.0 158 65.8
BcaC02g07213 Brassica carinata HOM05D006899 ORTHO05D008566 7.9e-42 174.5 145 69.7
C04p70000 Brassica napus HOM05D006899 ORTHO05D008566 7.9e-42 174.5 145 69.7
BolC4t28500H Brassica oleracea HOM05D006899 ORTHO05D008566 7.9e-42 174.5 145 69.7
BraA04t18701Z Brassica rapa HOM05D006899 ORTHO05D008566 1.0e-41 174.1 169 64.5
Sp4g25100 Schrenkiella parvula HOM05D006899 ORTHO05D008566 2.3e-41 172.9 147 72.1
THA.LOC104803370 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 3.0e-41 172.6 144 68.8
AL4G41610 Arabidopsis lyrata HOM05D006899 ORTHO05D008566 1.1e-40 170.6 121 81.0
AT2G42975 Arabidopsis thaliana HOM05D006899 ORTHO05D008566 1.1e-40 170.6 194 59.8
FAN14G2046 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.9e-40 169.9 122 74.6
Carub.0004s2544 Capsella rubella HOM05D006899 ORTHO05D008566 2.5e-40 169.5 122 77.0
BNapus_Darmor_BZH_scaffold_64p00160 Brassica napus HOM05D006899 ORTHO05D008566 5.7e-40 168.3 144 67.4
CARHR138030 Cardamine hirsuta HOM05D006899 ORTHO05D008566 5.7e-40 168.3 127 75.6
FAN02G3475 Fragaria x ananassa HOM05D006899 ORTHO05D008566 7.4e-40 167.9 184 57.1
BcaB06g29274 Brassica carinata HOM05D006899 ORTHO05D008566 9.7e-40 167.5 124 75.8
AUR62015134 Chenopodium quinoa HOM05D006899 ORTHO05D008566 1.3e-39 167.2 149 67.8
Migut.E01772 Erythranthe guttata HOM05D006899 ORTHO05D008566 2.8e-39 166.0 159 61.0
Thhalv10017256m.g Eutrema salsugineum HOM05D006899 ORTHO05D008566 3.7e-39 165.6 122 75.4
Aqoxy1G02918 Aquilegia oxysepala HOM05D006899 ORTHO05D008566 1.1e-38 164.1 147 60.5
Dinv09142 Davidia involucrata HOM05D006899 ORTHO05D008566 1.4e-38 163.7 171 60.2
EL10Ac9g22843 Beta vulgaris HOM05D006899 ORTHO05D008566 1.8e-38 163.3 148 66.9
Lalb_Chr04g0248871 Lupinus albus HOM05D006899 ORTHO05D008566 1.8e-38 163.3 98 85.7
THA.LOC104802283 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 1.8e-38 163.3 128 72.7
AUR62017595 Chenopodium quinoa HOM05D006899 ORTHO05D008566 9.1e-38 161.0 188 57.4
CSS0032532 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 1.4e-35 153.7 153 63.4
MBI10_g21113_MAGBIO Magnolia biondii HOM05D006899 ORTHO05D008566 1.4e-35 153.7 122 69.7
Lj1P601T16 Lonicera japonica HOM05D006899 ORTHO05D008566 1.2e-34 150.6 87 86.2
Ah.01g013620 Amaranthus hybridus HOM05D006899 ORTHO05D008566 1.8e-33 146.7 100 77.0
HanXRQChr17g0554721 Helianthus annuus HOM05D006899 ORTHO05D008566 1.8e-33 146.7 141 58.9
Duzib133G1045 Durio zibethinus HOM05D006899 ORTHO05D008566 3.9e-33 145.6 151 57.0
ECA233G0523 Erigeron canadensis HOM05D006899 ORTHO05D008566 3.9e-33 145.6 124 66.9
PSO478G1301 Papaver somniferum HOM05D006899 ORTHO05D008566 1.4e-30 137.1 169 57.4
PSO675G8667 Papaver somniferum HOM05D006899 ORTHO05D008566 1.4e-30 137.1 169 57.4
Lsat_1_v5_gn_8_137860 Lactuca sativa HOM05D006899 ORTHO05D008566 2.4e-30 136.3 155 54.8
CSS0025344 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 1.2e-29 134.0 138 59.4
CDE05G0801 Ceratophyllum demersum HOM05D006899 ORTHO05D008566 2.9e-28 129.4 129 56.6
HPP92_010055 Vanilla planifolia HOM05D006899 ORTHO05D008566 1.4e-27 127.1 132 56.8
PSO541G6147 Papaver somniferum HOM05D006899 ORTHO05D008566 1.6e-26 123.6 124 61.3
Os01g0666600 Oryza sativa ssp. japonica HOM05D006899 ORTHO05D008566 2.7e-26 122.9 186 44.6
Zm00001eb157430 Zea mays HOM05D006899 ORTHO05D008566 6.1e-26 121.7 140 52.1
Hund24244 Selenicereus undatus HOM05D006899 ORTHO05D008566 5.2e-25 118.6 97 69.1
Nitab4.5_0004243g0030 Nicotiana tabacum HOM05D006899 ORTHO05D008566 6.7e-25 118.2 83 77.1
ATR0585G139 Amborella trichopoda HOM05D006899 ORTHO05D008566 1.1e-24 117.5 124 56.5
unitig_60.g25592 Utricularia gibba HOM05D006899 ORTHO05D008566 5.7e-24 115.2 174 47.7
Nitab4.5_0004950g0010 Nicotiana tabacum HOM05D006899 ORTHO05D008566 8.2e-23 111.3 81 76.5
Nitab4.5_0009604g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 8.2e-23 111.3 81 76.5
Pp3c13_6560 Physcomitrium patens HOM05D006899 ORTHO05D008566 1.4e-22 110.5 154 44.8
TWI23G0441 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 2.5e-19 99.8 115 60.0
Mapoly0120s0054 Marchantia polymorpha HOM05D006899 ORTHO05D008566 6.1e-18 95.1 128 48.4
Nitab4.5_0002251g0080 Nicotiana tabacum HOM05D006899 ORTHO05D008566 5.2e-17 92.0 91 57.1
Medtr5g016040 Medicago truncatula HOM05D006899 ORTHO05D008566 4.8e-15 85.5 80 60.0
AagrBONN_evm.TU.Sc2ySwM_368.298 Anthoceros agrestis HOM05D006899 ORTHO05D008566 1.1e-14 84.3 122 42.6
SMO353G0201 Selaginella moellendorffii HOM05D006899 ORTHO05D008566 5.5e-11 72.0 90 47.8
Medtr7g035145 Medicago truncatula HOM05D006899 ORTHO05D008566 8.3e-07 58.2 69 37.7


User provided reference genes

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