Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026901.2 Cucumis melo HOM05D006942 ORTHO05D008737 2.8e-157 558.5 277 100.0
CsaV3_3G043400 Cucumis sativus L. HOM05D006942 ORTHO05D008737 4.4e-150 534.6 278 96.0
ClCG10G013230 Citrullus lanatus HOM05D006942 ORTHO05D008737 4.7e-144 514.6 279 93.2
Sed0013150 Sechium edule HOM05D006942 ORTHO05D008737 1.3e-130 469.9 281 85.1
Sed0025081 Sechium edule HOM05D006942 ORTHO05D008737 9.8e-126 453.8 287 82.2
Atru.chr2.1323 Acer truncatum HOM05D006942 ORTHO05D008737 2.1e-104 382.9 281 69.8
Thecc.05G293100 Theobroma cacao HOM05D006942 ORTHO05D008737 2.3e-103 379.4 286 68.2
Eucgr.A02087 Eucalyptus grandis HOM05D006942 ORTHO05D008737 6.8e-103 377.9 273 71.8
CANSAT78G1082 Cannabis sativa HOM05D006942 ORTHO05D008737 2.6e-102 375.9 285 69.1
QL07p020181 Quercus lobata HOM05D006942 ORTHO05D008737 2.6e-102 375.9 282 70.2
Gorai.013G123100 Gossypium raimondii HOM05D006942 ORTHO05D008737 4.4e-102 375.2 281 66.9
Gohir.D13G109500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 1.7e-101 373.2 281 66.9
Ciclev10021582m.g Citrus clementina HOM05D006942 ORTHO05D008737 4.9e-101 371.7 276 66.3
Manes.08G149200 Manihot esculenta HOM05D006942 ORTHO05D008737 8.4e-101 370.9 282 69.1
COL.COLO4_13617 Corchorus olitorius HOM05D006942 ORTHO05D008737 1.9e-100 369.8 285 66.7
Rhsim04G0087000 Rhododendron simsii HOM05D006942 ORTHO05D008737 9.2e-100 367.5 276 69.2
FvH4_3g25250 Fragaria vesca HOM05D006942 ORTHO05D008737 4.6e-99 365.2 285 66.7
Nn7g35832 Nelumbo nucifera HOM05D006942 ORTHO05D008737 1.0e-98 364.0 284 65.1
PGR042G3330 Punica granatum HOM05D006942 ORTHO05D008737 1.0e-98 364.0 281 67.3
Nn2g15884 Nelumbo nucifera HOM05D002140 ORTHO05D008737 1.3e-98 363.6 283 65.7
Gohir.A13G105500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 2.3e-98 362.8 280 65.4
Gorai.007G287900 Gossypium raimondii HOM05D006942 ORTHO05D008737 5.1e-98 361.7 288 64.9
TWI34G0045 Tripterygium wilfordii HOM05D006942 ORTHO05D008737 6.6e-98 361.3 285 66.3
FAN16G3006 Fragaria x ananassa HOM05D006942 ORTHO05D008737 8.6e-98 360.9 286 66.4
FAN21G2944 Fragaria x ananassa HOM05D006942 ORTHO05D008737 1.9e-97 359.8 287 65.9
Duzib177G1195 Durio zibethinus HOM05D006942 ORTHO05D008737 2.5e-97 359.4 287 64.5
MBI11_g05460_MAGBIO Magnolia biondii HOM05D006942 ORTHO05D008737 2.5e-97 359.4 281 65.5
PSO339G1210 Papaver somniferum HOM05D006942 ORTHO05D008737 4.3e-97 358.6 288 68.1
Cpa.g.sc51.94 Carica papaya HOM05D006942 ORTHO05D008737 7.3e-97 357.8 295 64.7
Potri.013G059500 Populus trichocarpa HOM05D006942 ORTHO05D008737 1.2e-96 357.1 276 67.4
RcHm_v2.0_Chr5g0046891 Rosa chinensis HOM05D006942 ORTHO05D008737 2.8e-96 355.9 288 63.9
THA.LOC104823787 Tarenaya hassleriana HOM05D006942 ORTHO05D008737 2.8e-96 355.9 286 66.1
vmacro09146 Vaccinium macrocarpon HOM05D006942 ORTHO05D008737 2.8e-96 355.9 274 67.2
Lalb_Chr24g0403081 Lupinus albus HOM05D006942 ORTHO05D008737 8.1e-96 354.4 276 67.0
arahy.Tifrunner.gnm1.ann1.0W916P Arachis hypogaea HOM05D006942 ORTHO05D008737 1.1e-95 354.0 291 64.6
BcaB07g31088 Brassica carinata HOM05D006942 ORTHO05D008737 1.4e-95 353.6 268 66.0
DCAR_019882 Daucus carota HOM05D006942 ORTHO05D008737 1.8e-95 353.2 279 64.9
Lj1g0019871 Lotus japonicus HOM05D006942 ORTHO05D008737 1.8e-95 353.2 291 63.6
SpUn0001_1050 Schrenkiella parvula HOM05D006942 ORTHO05D008737 1.8e-95 353.2 287 65.5
Glyma.19G110300 Glycine max HOM05D006942 ORTHO05D008737 4.0e-95 352.1 287 65.9
Psat3g089160 Pisum sativum HOM05D006942 ORTHO05D008737 5.8e-94 348.2 293 63.1
Haze_19409 Corylus avellana HOM05D006942 ORTHO05D008737 7.6e-94 347.8 313 60.7
AL1G64670 Arabidopsis lyrata HOM05D006942 ORTHO05D008737 1.7e-93 346.7 285 63.5
BcaC04g22009 Brassica carinata HOM05D006942 ORTHO05D008737 2.9e-93 345.9 273 65.6
C09p24900 Brassica napus HOM05D006942 ORTHO05D008737 2.9e-93 345.9 273 65.6
BolC9t55381H Brassica oleracea HOM05D006942 ORTHO05D008737 2.9e-93 345.9 273 65.6
TAR633G0669 Trochodendron aralioides HOM05D006942 ORTHO05D008737 2.9e-93 345.9 277 63.9
TPR.G5873 Trifolium pratense HOM05D006942 ORTHO05D008737 3.8e-93 345.5 291 59.8
GSVIVG01033386001 Vitis vinifera HOM05D006942 ORTHO05D008737 3.8e-93 345.5 180 88.9
A09p19530 Brassica napus HOM05D006942 ORTHO05D008737 4.9e-93 345.1 274 66.8
MD12G1002500 Malus domestica HOM05D006942 ORTHO05D008737 6.4e-93 344.7 204 80.9
Glyma.16G042200 Glycine max HOM05D006942 ORTHO05D008737 8.4e-93 344.4 281 65.5
Phvul.001G109600 Phaseolus vulgaris HOM05D006942 ORTHO05D008737 1.1e-92 344.0 286 64.3
Sabra19G0041400 Salix brachista HOM05D006942 ORTHO05D008737 1.9e-92 343.2 280 64.3
VMungo1383G0897 Vigna mungo HOM05D006942 ORTHO05D008737 1.2e-91 340.5 283 62.9
CARHR028870 Cardamine hirsuta HOM05D006942 ORTHO05D008737 2.7e-91 339.3 288 63.5
Medtr7g085420 Medicago truncatula HOM05D006942 ORTHO05D008737 1.0e-90 337.4 277 65.3
MSTRG.19939 Avicennia marina HOM05D006942 ORTHO05D008737 1.3e-90 337.0 299 61.5
Carub.0002s0962 Capsella rubella HOM05D006942 ORTHO05D008737 1.3e-90 337.0 279 61.6
Peaxi162Scf00076g01036 Petunia axillaris HOM05D006942 ORTHO05D008737 1.7e-90 336.7 307 60.6
AT2G23840 Arabidopsis thaliana HOM05D006942 ORTHO05D008737 6.6e-90 334.7 283 61.8
HanXRQChr13g0398101 Helianthus annuus HOM05D006942 ORTHO05D008737 1.9e-89 333.2 286 62.9
CDE10G0368 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 2.5e-89 332.8 276 62.3
DCAR_009675 Daucus carota HOM05D006942 ORTHO05D008737 2.5e-89 332.8 280 62.1
ECA233G4155 Erigeron canadensis HOM05D006942 ORTHO05D008737 2.5e-89 332.8 274 63.5
SGA_v2.0_scaffold50G18512 Striga asiatica HOM05D006942 ORTHO05D008737 2.5e-89 332.8 277 64.3
Lsat_1_v5_gn_6_36781 Lactuca sativa HOM05D006942 ORTHO05D008737 5.6e-89 331.6 280 63.6
Cc00_g08890 Coffea canephora HOM05D006942 ORTHO05D008737 1.3e-88 330.5 287 61.3
Aqoxy2G00557 Aquilegia oxysepala HOM05D006942 ORTHO05D008737 2.8e-88 329.3 286 62.6
Eucgr.K01480 Eucalyptus grandis HOM05D006942 ORTHO05D008737 1.1e-87 327.4 281 61.6
Aa31LG2G1990 Aethionema arabicum HOM05D006942 ORTHO05D008737 3.1e-87 325.9 294 60.9
Thhalv10008350m.g Eutrema salsugineum HOM05D006942 ORTHO05D008737 9.0e-87 324.3 283 61.1
Migut.J01895 Erythranthe guttata HOM05D006942 ORTHO05D008737 2.6e-86 322.8 191 81.7
HPP92_018642 Vanilla planifolia HOM05D006942 ORTHO05D008737 3.2e-84 315.8 277 58.5
ATR0697G165 Amborella trichopoda HOM05D006942 ORTHO05D008737 2.1e-83 313.2 270 61.9
PGR142G1268 Punica granatum HOM05D006942 ORTHO05D008737 1.5e-81 307.0 290 57.6
Gohir.D11G268200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 1.4e-79 300.4 288 56.6
TAR623G0107 Trochodendron aralioides HOM05D002140 ORTHO05D002382 1.8e-79 300.1 164 84.8
EL10Ac3g06808 Beta vulgaris HOM05D006942 ORTHO05D008737 1.2e-78 297.4 336 51.8
Lalb_Chr06g0173931 Lupinus albus HOM05D006942 ORTHO05D008737 1.5e-78 297.0 269 59.1
CDE06G2457 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 9.9e-78 294.3 185 74.1
CSS0046453 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 6.0e-75 285.0 286 56.3
CiPaw.09G001300 Carya illinoinensis HOM05D006942 ORTHO05D008737 1.1e-73 280.8 149 89.3
Os07g0170200 Oryza sativa ssp. japonica HOM05D006942 ORTHO05D008737 8.1e-72 274.6 163 77.9
Prupe.7G002400 Prunus persica HOM05D006942 ORTHO05D008737 8.1e-72 274.6 158 82.3
Sabra13G0052800 Salix brachista HOM05D006942 ORTHO05D008737 1.5e-70 270.4 154 83.1
AUR62032674 Chenopodium quinoa HOM05D006942 ORTHO05D008737 1.7e-69 266.9 170 71.8
Sc13g0007650 Simmondsia chinensis HOM05D006942 ORTHO05D008737 2.2e-69 266.5 246 60.2
Lj2A357G77 Lonicera japonica HOM05D006942 ORTHO05D008737 1.1e-68 264.2 149 83.9
Actinidia38618 Actinidia chinensis HOM05D006942 ORTHO05D008737 5.5e-68 261.9 274 53.6
Manes.09G142700 Manihot esculenta HOM05D006942 ORTHO05D008737 4.6e-67 258.8 213 64.3
Ca_08258_v3 Cicer arietinum L. HOM05D006942 ORTHO05D008737 3.3e-65 252.7 148 80.4
Duzib128G0620 Durio zibethinus HOM05D006942 ORTHO05D008737 5.9e-62 241.9 245 55.9
arahy.Tifrunner.gnm1.ann1.T4HPZA Arachis hypogaea HOM05D006942 ORTHO05D008737 7.6e-62 241.5 291 51.2
Nitab4.5_0000911g0030 Nicotiana tabacum HOM05D006942 ORTHO05D008737 1.9e-60 236.9 228 57.9
AUR62032073 Chenopodium quinoa HOM05D006942 ORTHO05D008737 2.1e-59 233.4 164 67.7
AagrBONN_evm.TU.Sc2ySwM_344.2088 Anthoceros agrestis HOM05D006942 ORTHO05D008737 1.2e-54 217.6 187 54.0
Pp3c12_13900 Physcomitrium patens HOM05D006942 ORTHO05D008737 7.7e-54 214.9 229 47.6
Mapoly0043s0076 Marchantia polymorpha HOM05D006942 ORTHO05D008737 3.8e-53 212.6 264 43.9
Pp3c4_7620 Physcomitrium patens HOM05D006942 ORTHO05D008737 6.5e-53 211.8 209 49.3
Ah.04g153240 Amaranthus hybridus HOM05D000653 ORTHO05D003117 3.9e-50 202.6 176 58.5
unitig_85.g27430 Utricularia gibba HOM05D006942 ORTHO05D008737 5.1e-50 202.2 253 50.6
SMO364G0530 Selaginella moellendorffii HOM05D006942 ORTHO05D008737 2.2e-48 196.8 181 50.3
Gohir.A11G258200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 5.3e-47 192.2 288 42.4
Oeu048436.1 Olea europaea HOM05D006942 ORTHO05D008737 6.9e-47 191.8 165 60.6
Potri.019G033200 Populus trichocarpa HOM05D006942 ORTHO05D008737 1.9e-44 183.7 276 42.4
Hund24842 Selenicereus undatus HOM05D006942 ORTHO05D008737 2.3e-42 176.8 343 36.2
CBR_g603 Chara braunii HOM05D006942 ORTHO05D008737 4.8e-40 169.1 210 45.7
Actinidia17307 Actinidia chinensis HOM05D006942 ORTHO05D008737 2.9e-37 159.8 105 72.4
PRCOL_00006758 Prasinoderma coloniale HOM05D006942 ORTHO05D008737 1.2e-35 154.5 186 46.2
SalBow2G1960 Salvia bowleyana HOM05D006942 ORTHO05D008737 1.0e-34 151.4 105 70.5
Cre04.g217903 Chlamydomonas reinhardtii HOM05D006942 ORTHO05D008737 1.3e-32 144.4 176 41.5
SEGI_36650 Sequoiadendron giganteum HOM05D006942 ORTHO05D008737 1.6e-22 110.9 69 75.4
Zm00001eb300960 Zea mays HOM05D006942 ORTHO05D008737 3.0e-10 70.1 49 67.3
CSS0026826 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 5.4e-07 59.3 50 56.0
Pp3s30_1160 Physcomitrium patens HOM05D006942 ORTHO05D317230 2.0e-06 57.4 62 40.3
Nitab4.5_0000001g0050 Nicotiana tabacum HOM05D006942 ORTHO05D008737 4.6e-06 56.2 130 36.2


User provided reference genes

Program Settings