Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 9.3e-217 756.5 366 100.0
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 2.0e-206 722.2 366 95.6
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 6.3e-197 690.6 366 89.6
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 4.7e-152 541.6 364 71.2
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 2.3e-151 539.3 364 72.8
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 8.9e-151 537.3 366 71.6
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 1.2e-150 537.0 360 71.9
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 9.8e-150 533.9 360 71.7
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 1.1e-148 530.4 367 68.9
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 1.1e-148 530.4 370 70.0
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 1.9e-148 529.6 369 72.4
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 3.2e-148 528.9 358 71.5
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 7.1e-148 527.7 362 70.7
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 4.6e-147 525.0 363 69.4
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 1.5e-145 520.0 362 69.9
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 7.3e-145 517.7 362 69.6
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 1.6e-144 516.5 365 68.8
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 1.6e-144 516.5 365 68.2
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 3.1e-143 512.3 343 70.8
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 6.8e-143 511.1 365 66.8
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.5e-142 510.0 356 70.2
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 4.4e-142 508.4 358 69.8
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 4.4e-142 508.4 364 67.3
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 5.8e-142 508.1 353 68.0
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 7.6e-142 507.7 360 67.8
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 2.2e-141 506.1 363 67.5
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 6.4e-141 504.6 343 70.3
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 1.1e-140 503.8 364 65.9
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.4e-140 503.4 369 66.9
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 3.2e-140 502.3 352 66.2
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 3.2e-140 502.3 365 67.9
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 5.4e-140 501.5 352 66.2
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 5.4e-140 501.5 352 66.2
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 5.4e-140 501.5 359 69.4
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 9.2e-140 500.7 352 65.6
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 9.2e-140 500.7 350 69.1
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 1.6e-139 500.0 353 66.6
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 2.1e-139 499.6 352 66.8
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 2.1e-139 499.6 352 65.6
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 2.1e-139 499.6 352 65.6
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 3.5e-139 498.8 353 66.9
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 6.0e-139 498.0 353 68.0
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 1.0e-138 497.3 348 68.1
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 1.0e-138 497.3 368 66.6
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 1.0e-138 497.3 361 66.2
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.3e-138 496.9 353 68.0
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 3.0e-138 495.7 356 69.1
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 3.0e-138 495.7 354 65.0
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.0e-138 495.7 353 68.3
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 3.9e-138 495.4 363 66.4
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 5.1e-138 495.0 365 66.3
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 6.6e-138 494.6 357 66.7
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 8.6e-138 494.2 355 67.3
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 8.6e-138 494.2 354 67.2
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 1.5e-137 493.4 355 66.5
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 3.3e-137 492.3 355 68.7
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 7.3e-137 491.1 358 67.3
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 7.3e-137 491.1 358 67.6
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 9.6e-137 490.7 344 66.6
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 2.8e-136 489.2 350 67.1
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 4.7e-136 488.4 353 65.4
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 1.1e-135 487.3 367 65.1
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 3.4e-134 482.3 424 59.2
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 5.8e-134 481.5 364 65.4
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 7.6e-134 481.1 368 64.7
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 1.3e-133 480.3 369 64.5
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 1.7e-133 479.9 364 64.3
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 2.9e-133 479.2 354 66.7
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 2.9e-133 479.2 363 64.7
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 2.9e-133 479.2 348 65.5
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 6.4e-133 478.0 350 65.1
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 6.0e-131 471.5 382 60.5
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.0e-130 470.7 347 66.3
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 1.0e-130 470.7 372 62.4
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 3.0e-130 469.2 372 62.6
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 5.1e-130 468.4 358 64.0
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 6.6e-130 468.0 364 63.2
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 8.7e-130 467.6 357 62.7
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 1.9e-129 466.5 359 64.3
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 1.9e-129 466.5 349 64.8
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 2.5e-129 466.1 363 61.4
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 3.3e-129 465.7 371 61.5
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 9.6e-129 464.2 354 64.1
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 2.1e-128 463.0 363 60.3
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 2.8e-128 462.6 358 61.5
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 4.8e-128 461.8 366 63.9
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 1.4e-127 460.3 416 55.5
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.0e-127 458.8 371 60.6
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.2e-126 457.2 393 58.0
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 1.2e-126 457.2 342 64.9
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 3.4e-126 455.7 355 64.2
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 9.9e-126 454.1 348 62.1
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.9e-125 452.6 345 63.8
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 1.1e-124 450.7 382 59.7
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.1e-124 450.7 360 59.4
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.2e-124 449.1 390 60.0
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 5.4e-124 448.4 388 59.5
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 4.6e-123 445.3 343 62.1
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 1.0e-122 444.1 361 60.9
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 1.1e-121 440.7 347 60.5
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 1.9e-121 439.9 307 67.4
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 7.4e-121 438.0 385 56.6
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 4.8e-120 435.3 312 69.2
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.2e-118 430.6 363 62.5
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.5e-118 430.3 363 59.8
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 3.4e-118 429.1 366 58.5
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 4.9e-117 425.2 310 68.7
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 1.8e-114 416.8 370 58.9
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.3e-114 416.4 393 54.7
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 1.9e-113 413.3 352 57.4
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.3e-113 412.5 396 54.8
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.6e-112 410.2 359 57.4
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 1.1e-111 407.5 345 57.4
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 1.1e-111 407.5 330 60.0
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 5.3e-111 405.2 367 56.7
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.0e-109 401.0 382 57.6
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 3.8e-109 399.1 559 41.9
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 1.1e-108 397.5 369 54.5
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 3.2e-108 396.0 401 52.9
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 3.5e-107 392.5 250 74.0
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 6.0e-107 391.7 373 55.5
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 2.5e-105 386.3 247 74.1
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 4.3e-105 385.6 355 56.3
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.8e-104 382.9 513 43.9
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 3.2e-100 369.4 243 70.4
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.1e-98 362.1 344 54.1
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 2.8e-96 356.3 369 48.2
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 1.1e-95 354.4 307 60.6
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.4e-95 353.2 274 61.3
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 2.3e-90 336.7 251 65.3
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 6.7e-90 335.1 360 48.3
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 5.7e-89 332.0 354 53.1
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 3.1e-87 326.2 355 48.2
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 2.0e-86 323.6 240 64.6
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 2.9e-85 319.7 236 64.0
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 1.7e-80 303.9 349 46.1
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 1.2e-75 287.7 190 73.7
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 1.2e-70 271.2 362 43.1
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.0e-69 268.1 288 52.1
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 2.7e-67 260.0 526 33.8
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 3.4e-65 253.1 193 63.2
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.7e-64 249.6 350 42.6
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 1.1e-55 221.5 306 39.9
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 9.5e-52 208.4 195 48.7
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 1.3e-48 198.0 266 42.5
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.8e-43 180.3 392 33.9
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.0e-37 159.5 172 50.6
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 5.0e-37 159.5 304 33.2
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 4.7e-35 152.9 129 58.9
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 1.1e-34 151.8 325 30.5
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 5.2e-26 122.9 98 62.2
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 9.9e-25 118.6 114 48.2
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 5.1e-21 106.3 81 61.7
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 8.9e-18 95.5 90 53.3
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.7e-16 91.3 63 63.5
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 1.1e-15 88.6 48 83.3
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 1.2e-09 68.6 135 34.1
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 9.9e-09 65.5 37 75.7
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 2.4e-07 60.8 47 53.2
SEGI_35437 Sequoiadendron giganteum HOM05D004534 ORTHO05D005413 1.2e-06 58.5 43 60.5


User provided reference genes

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