Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 1.1e-167 593.2 283 100.0
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 1.1e-161 573.2 283 96.5
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 1.4e-151 539.7 281 91.1
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 5.8e-150 534.3 281 90.4
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 1.1e-135 486.9 283 80.6
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 7.6e-134 480.7 284 79.6
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 1.3e-133 479.9 284 80.6
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 3.8e-133 478.4 284 79.6
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 5.0e-133 478.0 283 79.2
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 5.0e-133 478.0 280 80.0
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 5.0e-133 478.0 280 77.9
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 7.9e-131 470.7 281 79.0
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 7.9e-131 470.7 281 79.0
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 7.9e-131 470.7 283 78.4
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 3.0e-130 468.8 283 76.7
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 5.1e-130 468.0 281 79.7
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 1.1e-129 466.8 281 78.3
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.5e-129 466.5 281 78.3
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.5e-129 465.7 281 78.3
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 2.5e-129 465.7 281 78.3
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 3.3e-129 465.3 281 79.0
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 7.4e-129 464.2 284 77.5
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 1.3e-128 463.4 284 77.5
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 2.2e-128 462.6 281 77.6
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 4.8e-128 461.5 280 77.5
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 1.4e-127 459.9 281 77.2
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 4.1e-127 458.4 275 78.2
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 6.9e-127 457.6 280 74.6
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 9.1e-127 457.2 281 77.6
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 9.1e-127 457.2 284 75.4
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 1.5e-126 456.4 269 78.8
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 2.6e-126 455.7 284 76.1
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 4.5e-126 454.9 284 75.7
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 4.5e-126 454.9 281 76.5
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 7.7e-126 454.1 280 75.0
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 1.0e-125 453.8 281 75.8
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 1.0e-125 453.8 280 72.9
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 1.0e-125 453.8 280 77.1
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 8.5e-125 450.7 280 75.0
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 1.4e-124 449.9 281 75.8
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 1.4e-124 449.9 284 75.0
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 2.5e-124 449.1 281 76.9
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 2.5e-124 449.1 281 75.1
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 3.2e-124 448.7 284 75.4
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 5.5e-124 448.0 283 74.2
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 7.2e-124 447.6 281 76.5
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 7.2e-124 447.6 275 76.4
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 7.2e-124 447.6 280 72.5
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 7.2e-124 447.6 280 74.3
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 1.2e-123 446.8 279 76.0
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.6e-123 446.4 281 75.4
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 1.6e-123 446.4 281 75.4
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 2.1e-123 446.0 275 75.6
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 2.7e-123 445.7 280 72.1
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 3.6e-123 445.3 281 72.2
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 3.6e-123 445.3 283 74.9
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 4.7e-123 444.9 281 74.7
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 7.9e-123 444.1 280 71.8
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 7.9e-123 444.1 280 74.3
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 7.9e-123 444.1 280 70.7
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 1.4e-122 443.4 281 75.1
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 1.4e-122 443.4 281 74.7
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 2.3e-122 442.6 280 73.9
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 2.3e-122 442.6 280 73.6
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 3.0e-122 442.2 286 74.1
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 3.9e-122 441.8 279 75.3
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 5.1e-122 441.4 279 74.9
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 6.7e-122 441.0 280 72.9
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 1.5e-121 439.9 310 69.4
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 2.0e-121 439.5 280 71.8
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 2.6e-121 439.1 280 71.8
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 2.6e-121 439.1 280 71.8
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 2.6e-121 439.1 280 71.8
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 2.6e-121 439.1 280 71.8
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 1.3e-120 436.8 284 71.1
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 1.7e-120 436.4 311 69.1
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 4.8e-120 434.9 280 71.1
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 8.2e-120 434.1 268 76.1
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 1.1e-119 433.7 268 76.1
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 4.1e-119 431.8 288 69.4
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 1.2e-118 430.3 283 73.5
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 2.0e-118 429.5 270 75.2
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 2.2e-117 426.0 269 74.3
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 1.1e-116 423.7 284 72.2
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 2.1e-115 419.5 270 73.3
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 3.6e-115 418.7 281 69.8
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 3.6e-115 418.7 281 69.8
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.0e-114 417.2 275 73.5
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 3.9e-114 415.2 247 78.5
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 5.2e-114 414.8 281 68.7
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.3e-112 410.2 250 76.4
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 2.8e-112 409.1 275 69.1
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 1.4e-111 406.8 281 69.8
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.6e-110 403.3 278 68.0
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 4.5e-110 401.7 278 67.6
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 5.9e-110 401.4 295 66.8
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 7.2e-108 394.4 263 73.0
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 2.7e-107 392.5 259 69.5
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 1.0e-106 390.6 245 77.1
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 2.6e-105 386.0 251 70.9
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 2.6e-105 386.0 251 70.5
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 2.2e-104 382.9 231 77.9
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 4.5e-102 375.2 262 67.6
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 1.7e-96 356.7 248 67.3
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 1.4e-95 353.6 286 58.7
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 5.9e-94 348.2 283 56.2
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 8.6e-93 344.4 190 81.6
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 8.9e-90 334.3 278 56.5
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 5.4e-87 325.1 422 44.3
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 1.9e-84 316.6 265 60.0
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 2.6e-81 306.2 415 43.1
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 1.3e-80 303.9 264 56.4
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 2.3e-77 293.1 167 77.8
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 1.5e-76 290.4 167 77.2
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 3.3e-76 289.3 176 73.9
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 2.0e-73 280.0 176 69.3
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 1.9e-71 273.5 272 48.5
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 2.1e-70 270.0 143 83.2
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 3.3e-68 262.7 309 45.3
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 3.6e-67 259.2 295 45.1
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 2.7e-62 243.0 172 66.3
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 1.4e-58 230.7 249 50.6
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 4.4e-57 225.7 295 42.4
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.2e-54 217.6 144 63.2
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.1e-54 216.9 135 78.5
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 1.8e-50 203.8 248 47.2
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 5.8e-49 198.7 142 69.0
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 1.0e-45 188.0 161 60.2
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 1.2e-41 174.5 223 41.3
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 3.8e-32 142.9 110 58.2
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 7.9e-30 135.2 77 76.6
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 3.7e-27 126.3 72 70.8
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 3.7e-27 126.3 72 70.8
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 1.4e-26 124.4 70 77.1
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 2.5e-23 113.6 80 70.0
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.6e-22 110.9 88 65.9
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 4.6e-22 109.4 75 72.0
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 5.1e-21 105.9 92 60.9
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 9.7e-20 101.7 80 65.0
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 7.9e-14 82.0 52 69.2
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 2.5e-12 77.0 85 48.2
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 5.7e-12 75.9 56 66.1
MCO11G144 Micromonas commoda HOM05D019566 ORTHO05D017343 1.4e-07 61.2 126 32.5
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 7.2e-07 58.9 98 43.9


User provided reference genes

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