Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 1.6e-143 512.7 255 100.0
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 1.9e-136 489.2 252 95.2
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 5.8e-133 477.6 252 92.9
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 1.0e-124 450.3 252 88.1
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 3.8e-100 368.6 254 72.0
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 1.5e-99 366.7 237 75.9
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 1.2e-98 363.6 254 69.7
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 4.7e-98 361.7 238 74.8
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 1.1e-96 357.1 255 71.0
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 2.0e-96 356.3 255 69.8
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 4.4e-96 355.1 234 74.4
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 7.4e-96 354.4 253 68.0
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 7.4e-96 354.4 253 70.8
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 1.1e-94 350.5 238 73.9
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.1e-94 350.5 238 73.9
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 1.1e-94 350.5 254 67.7
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.4e-94 350.1 255 69.0
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.4e-94 349.4 253 66.4
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 3.1e-94 349.0 254 66.5
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 3.1e-94 349.0 253 66.4
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 7.0e-94 347.8 238 72.3
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 7.0e-94 347.8 253 68.0
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 4.5e-93 345.1 255 69.8
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 5.9e-93 344.7 238 71.0
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 5.9e-93 344.7 242 70.7
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 7.7e-93 344.4 242 70.7
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 1.7e-92 343.2 256 68.0
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 1.7e-92 343.2 254 66.9
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 1.7e-92 343.2 254 67.7
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 2.2e-92 342.8 238 70.2
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 2.9e-92 342.4 255 69.0
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 3.8e-92 342.0 254 64.6
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 3.8e-92 342.0 236 71.2
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 5.0e-92 341.7 253 66.0
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 5.0e-92 341.7 254 66.1
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 6.5e-92 341.3 253 66.4
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 1.5e-91 340.1 255 68.2
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 1.5e-91 340.1 236 70.8
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 3.2e-91 339.0 254 66.5
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 1.2e-90 337.0 207 78.3
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 2.1e-90 336.3 252 66.3
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.1e-90 336.3 234 70.9
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 2.1e-90 336.3 236 70.3
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 2.1e-90 336.3 242 68.2
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 2.7e-90 335.9 237 67.9
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 6.1e-90 334.7 254 64.2
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 8.0e-90 334.3 242 66.5
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.8e-89 333.2 234 69.7
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 1.8e-89 333.2 234 70.1
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 3.0e-89 332.4 234 69.2
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 5.2e-89 331.6 254 65.7
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 2.0e-88 329.7 234 67.9
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 2.0e-88 329.7 235 68.5
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.6e-88 329.3 236 68.2
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.6e-88 329.3 253 66.4
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 2.6e-88 329.3 238 67.2
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 3.4e-88 328.9 215 73.0
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 3.4e-88 328.9 232 68.5
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 3.4e-88 328.9 234 67.9
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 3.4e-88 328.9 218 72.5
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 5.7e-88 328.2 234 67.9
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 7.5e-88 327.8 234 67.9
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 9.7e-88 327.4 231 68.4
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 9.7e-88 327.4 237 67.1
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 9.7e-88 327.4 233 68.7
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 1.3e-87 327.0 205 78.0
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 1.7e-87 326.6 247 64.0
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 2.2e-87 326.2 255 63.5
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 2.2e-87 326.2 232 68.1
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 8.3e-87 324.3 232 69.0
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 1.4e-86 323.6 204 77.5
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 1.4e-86 323.6 231 69.7
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 1.4e-86 323.6 231 69.7
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 1.8e-86 323.2 228 68.9
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 1.8e-86 323.2 236 67.8
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.8e-86 323.2 236 67.8
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 2.4e-86 322.8 233 68.2
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 2.4e-86 322.8 236 68.2
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 3.1e-86 322.4 231 69.3
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 5.3e-86 321.6 217 71.0
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 7.0e-86 321.2 207 73.4
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 7.0e-86 321.2 232 65.1
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 9.1e-86 320.9 240 67.5
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 1.2e-85 320.5 234 66.7
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 1.2e-85 320.5 218 69.7
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 1.6e-85 320.1 234 66.2
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 5.9e-85 318.2 236 67.4
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.3e-84 317.0 230 68.3
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 1.3e-84 317.0 204 75.5
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.2e-84 316.2 255 62.0
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 2.2e-84 316.2 218 68.8
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 8.5e-84 314.3 217 69.1
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 4.2e-83 312.0 207 72.0
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 5.5e-83 311.6 232 65.5
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 7.2e-83 311.2 211 69.7
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 1.6e-82 310.1 230 64.3
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 8.0e-82 307.8 241 62.7
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.0e-81 305.8 237 64.6
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 9.8e-80 300.8 215 66.5
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.3e-79 300.4 252 62.3
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 2.8e-79 299.3 252 61.9
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 8.3e-79 297.7 212 68.4
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.6e-77 293.5 205 72.2
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 7.7e-77 291.2 205 67.8
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 2.3e-76 289.7 210 65.7
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.9e-75 286.6 196 70.9
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 2.3e-73 279.6 210 63.8
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 1.3e-71 273.9 234 57.3
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.1e-70 270.8 246 58.9
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 1.4e-70 270.4 207 64.3
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 1.2e-69 267.3 216 62.0
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 4.5e-69 265.4 209 63.2
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 1.0e-68 264.2 203 61.1
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 2.5e-67 259.6 207 60.4
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 5.4e-62 241.9 190 62.6
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 3.0e-60 236.1 209 54.5
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 4.7e-58 228.8 182 66.5
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 1.8e-57 226.9 209 52.2
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 1.5e-56 223.8 206 53.4
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 2.6e-56 223.0 179 66.5
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 2.6e-56 223.0 244 45.1
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 4.4e-56 222.2 178 62.9
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 1.4e-54 217.2 211 52.6
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 4.6e-53 212.2 160 66.9
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 9.5e-51 204.5 216 50.9
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 8.3e-47 191.4 119 73.1
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 2.4e-46 189.9 230 39.1
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 1.3e-39 167.5 212 41.5
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 3.8e-39 166.0 109 73.4
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 8.4e-31 138.3 101 71.3
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.9e-27 127.1 130 52.3
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 2.5e-27 126.7 105 60.0
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 2.0e-24 117.1 91 61.5
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 4.2e-22 109.4 113 45.1
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 7.1e-22 108.6 86 65.1
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 3.4e-16 89.7 86 52.3
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 7.6e-16 88.6 57 75.4
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 7.1e-14 82.0 253 31.6
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 5.8e-08 62.4 44 65.9
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 2.5e-06 57.0 58 51.7


User provided reference genes

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