Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 7.5e-144 513.8 261 100.0
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 1.5e-136 489.6 261 95.0
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 1.1e-129 466.8 262 92.4
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 2.9e-127 458.8 261 90.0
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 7.9e-101 370.9 249 75.9
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 4.3e-99 365.2 237 76.8
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 8.1e-98 360.9 256 69.1
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 1.1e-97 360.5 254 73.6
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 5.3e-97 358.2 257 72.4
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 6.9e-97 357.8 237 75.1
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 1.2e-96 357.1 250 74.0
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 2.0e-96 356.3 234 75.2
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 3.4e-96 355.5 266 68.4
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 4.5e-96 355.1 257 72.4
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 7.6e-96 354.4 244 72.5
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 1.7e-95 353.2 265 68.7
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 2.2e-95 352.8 255 72.5
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 1.1e-94 350.5 242 73.1
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 1.4e-94 350.1 241 72.6
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 2.5e-94 349.4 233 76.0
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 1.2e-93 347.1 259 69.9
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 1.2e-93 347.1 248 72.6
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 1.6e-93 346.7 252 72.2
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 2.1e-93 346.3 255 69.8
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 4.6e-93 345.1 257 72.4
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 3.0e-92 342.4 254 68.5
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 3.0e-92 342.4 259 66.8
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 3.9e-92 342.0 256 71.9
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 5.1e-92 341.7 241 72.6
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 1.1e-91 340.5 259 66.8
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 1.9e-91 339.7 243 70.4
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 5.7e-91 338.2 243 70.0
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 9.6e-91 337.4 243 70.0
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 1.3e-90 337.0 237 72.2
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 2.8e-90 335.9 258 65.9
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 2.8e-90 335.9 237 71.7
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 2.8e-90 335.9 237 71.7
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 3.7e-90 335.5 255 66.7
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 8.2e-90 334.3 259 66.4
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 1.8e-89 333.2 255 67.5
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 9.0e-89 330.9 242 69.4
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 9.0e-89 330.9 250 68.4
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 1.2e-88 330.5 236 69.1
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.5e-88 330.1 236 70.3
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.5e-88 330.1 236 70.3
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 3.4e-88 328.9 265 63.4
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 5.9e-88 328.2 252 67.9
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 7.6e-88 327.8 245 68.6
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 1.0e-87 327.4 248 66.9
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 1.0e-87 327.4 240 70.8
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 1.3e-87 327.0 252 67.1
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 1.7e-87 326.6 257 65.8
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 8.4e-87 324.3 235 68.5
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 5.5e-86 321.6 226 72.6
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 5.5e-86 321.6 229 72.1
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 7.2e-86 321.2 248 65.7
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 7.2e-86 321.2 250 66.8
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 9.3e-86 320.9 241 68.5
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 2.7e-85 319.3 241 67.6
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 3.5e-85 318.9 247 64.0
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 3.5e-85 318.9 233 67.8
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 6.1e-85 318.2 248 65.3
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 6.1e-85 318.2 234 68.8
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 1.8e-84 316.6 235 70.2
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 1.8e-84 316.6 209 72.2
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 2.3e-84 316.2 226 71.7
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 3.0e-84 315.8 241 66.8
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 3.9e-84 315.5 236 65.3
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 5.1e-84 315.1 235 66.8
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 5.1e-84 315.1 225 72.0
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 8.7e-84 314.3 241 64.3
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 1.5e-83 313.5 232 66.4
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 1.9e-83 313.2 253 62.8
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 3.3e-83 312.4 241 63.9
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 4.3e-83 312.0 246 65.0
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 4.3e-83 312.0 225 72.0
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 4.3e-83 312.0 229 67.7
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 5.7e-83 311.6 255 62.7
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 7.4e-83 311.2 247 65.2
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 9.7e-83 310.8 234 66.7
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 1.3e-82 310.5 241 63.5
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 2.2e-82 309.7 241 63.1
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 2.8e-82 309.3 199 77.4
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 4.8e-82 308.5 250 64.8
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 1.8e-81 306.6 252 63.5
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 1.8e-81 306.6 252 63.5
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 5.3e-81 305.1 261 62.5
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 9.0e-81 304.3 233 65.2
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 5.9e-80 301.6 392 46.7
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 5.9e-80 301.6 243 64.6
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 1.7e-79 300.1 226 66.8
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 2.9e-79 299.3 243 61.3
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 2.9e-79 299.3 255 60.0
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 4.6e-77 292.0 239 64.4
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 6.7e-76 288.1 249 60.2
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 7.7e-72 274.6 250 60.4
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 1.3e-63 247.3 184 66.8
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 2.7e-61 239.6 204 56.4
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 8.0e-61 238.0 199 60.8
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 4.8e-58 228.8 199 57.3
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 4.8e-58 228.8 190 63.7
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 7.0e-57 224.9 228 52.2
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 7.0e-49 198.4 151 70.9
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 1.5e-46 190.7 265 43.4
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 8.0e-45 184.9 139 64.0
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 4.3e-38 162.5 98 80.6
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 1.0e-36 157.9 101 74.3
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 1.5e-30 137.5 110 61.8
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 4.3e-22 109.4 80 71.2
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 1.1e-17 94.7 224 35.3
Cre01.g043050 Chlamydomonas reinhardtii HOM05D005243 ORTHO05D006670 6.0e-08 62.4 179 27.4
Cre06.g262000 Chlamydomonas reinhardtii HOM05D001530 ORTHO05D003676 1.0e-07 61.6 146 28.1


User provided reference genes

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