Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026715.2 Cucumis melo HOM05D007236 ORTHO05D009150 1.2e-214 749.6 390 100.0
CsaV3_3G030460 Cucumis sativus L. HOM05D007236 ORTHO05D009150 3.0e-205 718.4 390 95.9
ClCG07G014680 Citrullus lanatus HOM05D007236 ORTHO05D009150 5.0e-176 621.3 361 90.0
Sed0012172 Sechium edule HOM05D007236 ORTHO05D009150 2.0e-156 556.2 395 75.4
Manes.06G179100 Manihot esculenta HOM05D007236 ORTHO05D009150 9.5e-135 484.2 372 70.4
Thecc.06G055000 Theobroma cacao HOM05D007236 ORTHO05D009150 1.8e-133 479.9 380 66.1
Duzib160G0063 Durio zibethinus HOM05D007236 ORTHO05D009150 5.2e-133 478.4 396 64.9
QL05p088536 Quercus lobata HOM05D007236 ORTHO05D009150 2.0e-132 476.5 373 68.4
GSVIVG01029561001 Vitis vinifera HOM05D007236 ORTHO05D009150 2.6e-132 476.1 382 66.5
Eucgr.J03184 Eucalyptus grandis HOM05D007236 ORTHO05D009150 9.2e-130 467.6 379 66.2
Dinv20327 Davidia involucrata HOM05D007236 ORTHO05D009150 3.5e-129 465.7 383 64.5
Lj3g0020822 Lotus japonicus HOM05D007236 ORTHO05D009150 5.1e-128 461.8 376 65.4
FvH4_6g36830 Fragaria vesca HOM05D007236 ORTHO05D009150 5.6e-127 458.4 393 62.8
FAN09G1281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 6.2e-126 454.9 393 61.6
Psat7g265040 Pisum sativum HOM05D007236 ORTHO05D009150 8.1e-126 454.5 390 63.8
FAN14G0281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 2.4e-125 453.0 392 62.5
Sabra08G0001500 Salix brachista HOM05D007236 ORTHO05D009150 5.2e-125 451.8 389 62.7
TWI18G0405 Tripterygium wilfordii HOM05D007236 ORTHO05D009150 5.2e-125 451.8 378 64.0
RcHm_v2.0_Chr2g0149221 Rosa chinensis HOM05D007236 ORTHO05D009150 6.8e-125 451.4 359 66.3
Potri.008G003800 Populus trichocarpa HOM05D007236 ORTHO05D009150 5.8e-124 448.4 384 63.0
FAN05G3464 Fragaria x ananassa HOM05D007236 ORTHO05D009150 9.9e-124 447.6 424 58.5
VMungo0331G1697 Vigna mungo HOM05D007236 ORTHO05D009150 3.8e-123 445.7 386 63.5
THA.LOC104812331 Tarenaya hassleriana HOM05D007236 ORTHO05D009150 4.9e-123 445.3 382 62.0
TAR636G0504 Trochodendron aralioides HOM05D007236 ORTHO05D009150 1.9e-122 443.4 382 61.5
Glyma.08G225400 Glycine max HOM05D007236 ORTHO05D009150 2.4e-122 443.0 385 62.6
Hund05669 Selenicereus undatus HOM05D007236 ORTHO05D009150 7.1e-122 441.4 372 62.1
AUR62025709 Chenopodium quinoa HOM05D007236 ORTHO05D009150 9.3e-122 441.0 393 59.8
Ca_20979_v3 Cicer arietinum L. HOM05D007236 ORTHO05D009150 1.6e-121 440.3 320 70.9
Prupe.3G024200 Prunus persica HOM05D007236 ORTHO05D009150 1.6e-121 440.3 381 63.0
Actinidia31123 Actinidia chinensis HOM05D007236 ORTHO05D009150 7.8e-121 438.0 400 60.8
Gorai.010G141500 Gossypium raimondii HOM05D007236 ORTHO05D009150 1.5e-119 433.7 390 60.3
Gohir.A06G116300 Gossypium hirsutum HOM05D007236 ORTHO05D009150 5.6e-119 431.8 379 61.5
MD09G1166500 Malus domestica HOM05D007236 ORTHO05D009150 5.6e-119 431.8 390 60.3
Glyma.07G001600 Glycine max HOM05D007236 ORTHO05D009150 1.3e-118 430.6 374 62.6
arahy.Tifrunner.gnm1.ann1.I3AU87 Arachis hypogaea HOM05D007236 ORTHO05D009150 2.1e-118 429.9 382 62.8
Sp5g33940 Schrenkiella parvula HOM05D007236 ORTHO05D009150 2.8e-118 429.5 374 58.8
Carub.0002s2575 Capsella rubella HOM05D007236 ORTHO05D009150 8.1e-118 427.9 381 58.3
PGR031G2337 Punica granatum HOM05D007236 ORTHO05D009150 3.1e-117 426.0 381 61.4
ECA234G1409 Erigeron canadensis HOM05D007236 ORTHO05D009150 9.0e-117 424.5 353 63.5
CARHR072510 Cardamine hirsuta HOM05D007236 ORTHO05D009150 1.5e-116 423.7 376 59.3
AL2G39340 Arabidopsis lyrata HOM05D007236 ORTHO05D009150 4.4e-116 422.2 372 57.5
HanXRQChr10g0311241 Helianthus annuus HOM05D007236 ORTHO05D009150 5.8e-116 421.8 380 58.9
Lsat_1_v5_gn_5_137160 Lactuca sativa HOM05D007236 ORTHO05D009150 1.9e-114 416.8 359 60.4
arahy.Tifrunner.gnm1.ann1.QM8PPU Arachis hypogaea HOM05D007236 ORTHO05D009150 2.4e-114 416.4 405 58.3
AT1G78915 Arabidopsis thaliana HOM05D007236 ORTHO05D009150 9.3e-114 414.5 401 54.1
Medtr4g005300 Medicago truncatula HOM05D007236 ORTHO05D009150 1.2e-113 414.1 342 65.2
Nn5g27081 Nelumbo nucifera HOM05D007236 ORTHO05D009150 1.2e-113 414.1 378 60.1
BcaB02g07186 Brassica carinata HOM05D007236 ORTHO05D009150 2.1e-113 413.3 392 56.6
Aa31LG4G2080 Aethionema arabicum HOM05D007236 ORTHO05D009150 6.0e-113 411.8 374 60.2
A07p27420 Brassica napus HOM05D007236 ORTHO05D009150 1.3e-112 410.6 403 55.3
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 1.7e-112 410.2 386 56.7
Sopen03g041760 Solanum pennellii HOM05D007236 ORTHO05D009150 3.0e-112 409.5 383 57.4
Aqoxy5G00022 Aquilegia oxysepala HOM05D007236 ORTHO05D009150 3.9e-112 409.1 387 58.9
Solyc03g124030.4 Solanum lycopersicum HOM05D007236 ORTHO05D009150 6.6e-112 408.3 383 57.2
TPR.G38815 Trifolium pratense HOM05D007236 ORTHO05D009150 2.5e-111 406.4 332 65.7
SGA_v2.0_scaffold71G23973 Striga asiatica HOM05D007236 ORTHO05D009150 7.3e-111 404.8 378 59.8
BolC6t38197H Brassica oleracea HOM05D007236 ORTHO05D009150 6.2e-110 401.7 397 55.2
COL.COLO4_31136 Corchorus olitorius HOM05D007236 ORTHO05D009150 1.8e-109 400.2 363 59.8
C06p30340 Brassica napus HOM05D007236 ORTHO05D009150 9.0e-109 397.9 408 54.2
DCAR_016079 Daucus carota HOM05D007236 ORTHO05D009150 1.4e-106 390.6 379 56.2
BraA07t30383Z Brassica rapa HOM05D007236 ORTHO05D009150 4.2e-106 389.0 406 53.0
Cc04_g00020 Coffea canephora HOM05D007236 ORTHO05D009150 4.2e-106 389.0 355 57.7
Zm00001eb305180 Zea mays HOM05D007236 ORTHO05D009150 9.3e-106 387.9 374 54.8
Oeu039939.2 Olea europaea HOM05D007236 ORTHO05D009150 7.9e-105 384.8 330 61.8
AUR62001326 Chenopodium quinoa HOM05D007236 ORTHO05D009150 2.8e-102 376.3 333 59.2
CDE05G3570 Ceratophyllum demersum HOM05D007236 ORTHO05D008204 3.1e-101 372.9 392 55.6
vmacro12583 Vaccinium macrocarpon HOM05D007236 ORTHO05D009150 5.1e-96 355.5 341 57.2
ATR0215G005 Amborella trichopoda HOM05D007236 ORTHO05D009150 4.8e-94 349.0 361 55.4
unitig_32.g11550 Utricularia gibba HOM05D007236 ORTHO05D009150 1.4e-93 347.4 393 48.3
Sc12g0011240 Simmondsia chinensis HOM05D000518 ORTHO05D000737 3.1e-93 346.3 273 65.2
Migut.I01208 Erythranthe guttata HOM05D007236 ORTHO05D009150 1.0e-91 341.3 310 60.0
CiPaw.01G207800 Carya illinoinensis HOM05D007236 ORTHO05D009150 4.6e-89 332.4 316 60.4
Thhalv10018805m.g Eutrema salsugineum HOM05D007236 ORTHO05D009150 6.1e-89 332.0 374 50.0
Gohir.D06G121200 Gossypium hirsutum HOM05D007236 ORTHO05D009150 8.7e-88 328.2 379 49.9
SEGI_39602 Sequoiadendron giganteum HOM05D007236 ORTHO05D009150 2.5e-87 326.6 371 49.1
Sc12g0011350 Simmondsia chinensis HOM05D007236 ORTHO05D009150 1.2e-81 307.8 244 65.6
Lalb_Chr01g0011631 Lupinus albus HOM05D007236 ORTHO05D009150 1.0e-80 304.7 214 72.0
Peaxi162Scf00038g02668 Petunia axillaris HOM05D007236 ORTHO05D009150 8.8e-80 301.6 314 52.5
Rhsim02G0000100 Rhododendron simsii HOM05D007236 ORTHO05D009150 2.2e-78 297.0 465 41.5
MSTRG.22498 Avicennia marina HOM05D007236 ORTHO05D009150 8.2e-78 295.0 393 45.5
PSO170G4015 Papaver somniferum HOM05D007236 ORTHO05D009150 3.0e-72 276.6 384 43.5
Haze_16198 Corylus avellana HOM05D007236 ORTHO05D009150 8.8e-72 275.0 269 56.5
PSO357G0009 Papaver somniferum HOM05D007236 ORTHO05D009150 1.5e-71 274.2 378 43.4
SMO117G0135 Selaginella moellendorffii HOM05D007236 ORTHO05D009150 1.6e-68 264.2 352 44.0
CAN.G790.6 Capsicum annuum HOM05D007236 ORTHO05D009150 1.7e-67 260.8 200 64.5
FAN02G2413 Fragaria x ananassa HOM05D007236 ORTHO05D009150 4.0e-64 249.6 297 48.1
Ciclev10013942m.g Citrus clementina HOM05D007236 ORTHO05D009150 4.4e-63 246.1 186 67.7
Lj9A543T71 Lonicera japonica HOM05D007236 ORTHO05D009150 9.1e-61 238.4 186 66.1
Mapoly0075s0045 Marchantia polymorpha HOM05D007236 ORTHO05D009150 1.7e-59 234.2 389 39.3
EL10Ac7g18131 Beta vulgaris HOM05D007236 ORTHO05D009150 9.4e-58 228.4 254 53.1
Pp3c5_19050 Physcomitrium patens HOM05D007236 ORTHO05D009150 2.1e-57 227.3 404 38.4
AagrBONN_evm.TU.Sc2ySwM_117.3884 Anthoceros agrestis HOM05D007236 ORTHO05D009150 7.5e-55 218.8 342 37.4
Atru.chr1.2627 Acer truncatum HOM05D007236 ORTHO05D009150 9.8e-47 191.8 137 71.5
Cpa.g.sc176.15 Carica papaya HOM05D007236 ORTHO05D009150 1.1e-45 188.3 217 50.2
Atru.chr1.2630 Acer truncatum HOM05D007236 ORTHO05D009150 3.9e-35 153.3 124 63.7
Ciclev10013945m.g Citrus clementina HOM05D007236 ORTHO05D009150 3.3e-34 150.2 119 65.5
Nitab4.5_0000499g0120 Nicotiana tabacum HOM05D007236 ORTHO05D009150 3.3e-34 150.2 88 78.4
CANSAT01G0299 Cannabis sativa HOM05D007236 ORTHO05D009150 4.4e-31 139.8 109 67.0
Lj9A543T70 Lonicera japonica HOM05D007236 ORTHO05D009150 2.2e-30 137.5 99 68.7
PRCOL_00005889 Prasinoderma coloniale HOM05D007236 ORTHO05D009150 2.4e-29 134.0 351 32.5
Os07g0287100 Oryza sativa ssp. japonica HOM05D007236 ORTHO05D009150 1.7e-27 127.9 153 49.7
Cre12.g554103 Chlamydomonas reinhardtii HOM05D007236 ORTHO05D009150 2.6e-23 114.0 349 27.8
CSS0013667 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 3.4e-23 113.6 87 66.7
CSS0007704 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 1.1e-18 98.6 87 57.5
Haze_16199 Corylus avellana HOM05D007236 ORTHO05D009150 9.5e-18 95.5 66 78.8
MCO09G516 Micromonas commoda HOM05D007236 ORTHO05D009150 2.0e-15 87.8 331 26.6
Nitab4.5_0000499g0130 Nicotiana tabacum HOM05D007236 ORTHO05D009150 2.1e-09 67.8 47 72.3
TPR.G34754 Trifolium pratense HOM05D001509 ORTHO05D001361 4.0e-08 63.5 207 27.1
THA.LOC104823250 Tarenaya hassleriana HOM05D001509 ORTHO05D001361 1.2e-07 62.0 216 27.3
Aa31sc24G50 Aethionema arabicum HOM05D002308 ORTHO05D002535 2.6e-07 60.8 57 50.9
AagrBONN_evm.TU.Sc2ySwM_117.1754 Anthoceros agrestis HOM05D001509 ORTHO05D001361 3.4e-07 60.5 196 25.0
ClCG07G014700 Citrullus lanatus HOM05D007236 ORTHO05D009150 5.8e-07 59.7 33 87.9
CBR_g28648 Chara braunii HOM05D001509 ORTHO05D001361 7.6e-07 59.3 177 29.4
Psat7g086600 Pisum sativum HOM05D001509 ORTHO05D001361 9.9e-07 58.9 206 25.7
Mapoly0157s0006 Marchantia polymorpha HOM05D001509 ORTHO05D001361 1.3e-06 58.5 201 21.9
Oeu060057.1 Olea europaea HOM05D001509 ORTHO05D001361 1.7e-06 58.2 248 24.2
HPP92_021784 Vanilla planifolia HOM05D001509 ORTHO05D001361 1.7e-06 58.2 248 25.0


User provided reference genes

Program Settings