Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 0.0e+00 1128.2 563 100.0
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 6.9e-304 1046.6 563 93.3
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 6.6e-270 933.7 564 84.9
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 7.1e-232 807.4 552 75.2
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 8.5e-169 597.8 565 56.8
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 2.3e-166 589.7 567 56.4
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 5.7e-165 585.1 576 54.2
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 2.4e-163 579.7 577 53.2
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 4.1e-163 578.9 567 54.5
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 9.5e-160 567.8 574 53.7
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 6.1e-159 565.1 562 54.3
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 8.0e-159 564.7 586 52.7
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 1.4e-158 563.9 592 51.4
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 3.4e-157 559.3 571 53.6
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 4.9e-156 555.4 558 52.9
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 8.3e-156 554.7 558 52.9
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 2.4e-155 553.1 568 52.6
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 4.5e-154 548.9 581 52.2
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 4.5e-154 548.9 577 51.5
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 5.9e-154 548.5 598 50.2
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.3e-153 547.4 585 50.4
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 6.6e-153 545.0 582 51.0
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 1.5e-152 543.9 601 51.2
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 1.5e-152 543.9 591 50.1
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 3.3e-152 542.7 590 50.5
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 1.4e-150 537.3 590 51.2
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 5.2e-150 535.4 583 50.6
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 1.2e-149 534.3 610 51.1
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 2.6e-149 533.1 557 51.5
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 5.8e-149 531.9 585 50.3
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 9.8e-149 531.2 583 50.4
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 4.9e-148 528.9 587 50.3
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-146 523.5 606 49.5
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 2.7e-146 523.1 606 49.7
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 3.5e-146 522.7 590 48.8
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.1e-144 517.7 568 48.4
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 3.1e-142 509.6 615 48.6
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 4.4e-141 505.8 580 49.0
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.2e-140 503.4 625 47.0
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 1.2e-138 497.7 670 44.5
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 6.6e-137 491.9 571 46.6
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 1.4e-134 484.2 626 43.8
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 8.9e-134 481.5 560 47.7
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 1.2e-133 481.1 569 47.8
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.7e-132 477.2 632 45.7
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 1.9e-131 473.8 616 46.3
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.9e-131 473.8 616 46.3
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.9e-131 473.8 564 46.8
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 9.2e-131 471.5 589 45.8
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 1.3e-129 467.6 566 45.9
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.7e-129 467.2 592 44.6
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 5.1e-129 465.7 572 46.3
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.1e-128 464.5 501 49.7
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.1e-128 464.5 535 48.4
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 5.6e-128 462.2 558 45.7
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 3.6e-127 459.5 666 43.8
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 3.6e-127 459.5 565 45.1
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 4.7e-127 459.1 577 45.8
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 6.2e-127 458.8 595 43.9
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 8.1e-127 458.4 563 44.6
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 5.2e-126 455.7 618 44.8
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 8.9e-126 454.9 557 45.8
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 3.4e-125 453.0 450 55.3
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 4.4e-125 452.6 620 44.5
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 4.9e-124 449.1 600 46.3
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 4.9e-124 449.1 635 43.8
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.1e-123 448.0 513 48.9
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 1.4e-123 447.6 577 44.2
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 2.4e-123 446.8 611 43.5
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 9.3e-123 444.9 575 44.7
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 1.2e-122 444.5 575 44.5
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 1.0e-121 441.4 566 44.2
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 6.6e-121 438.7 563 44.6
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 8.7e-121 438.3 567 44.3
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 1.3e-119 434.5 579 44.0
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.6e-119 434.1 575 44.2
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 1.6e-119 434.1 564 44.5
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 6.2e-119 432.2 500 46.8
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 3.1e-118 429.9 574 43.4
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 6.9e-118 428.7 567 43.7
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 6.9e-118 428.7 494 47.8
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.5e-117 427.6 621 43.2
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 2.6e-117 426.8 623 42.7
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 3.4e-117 426.4 667 41.1
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 5.8e-117 425.6 485 49.3
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 1.1e-115 421.4 658 41.0
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 6.0e-114 415.6 429 52.4
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 3.3e-112 409.8 569 42.5
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 9.6e-112 408.3 570 42.1
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 8.1e-111 405.2 496 48.0
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 3.1e-110 403.3 566 41.7
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 3.8e-108 396.4 554 41.3
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 4.9e-108 396.0 567 42.2
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.3e-97 361.3 544 42.6
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 3.9e-97 359.8 610 38.4
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 8.7e-97 358.6 567 39.7
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 1.4e-94 351.3 556 39.0
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 3.1e-94 350.1 573 38.9
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 2.0e-93 347.4 503 42.9
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 3.4e-93 346.7 570 38.9
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 2.5e-91 340.5 329 54.4
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.3e-89 334.0 339 52.8
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 3.1e-86 323.6 507 41.8
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 1.2e-85 321.6 562 40.0
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 1.5e-85 321.2 659 35.1
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 4.5e-85 319.7 434 42.2
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 7.7e-85 318.9 446 39.7
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 1.2e-82 311.6 309 54.7
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 3.6e-82 310.1 486 40.7
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 6.1e-82 309.3 404 44.3
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 9.7e-80 302.0 352 48.9
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 9.7e-80 302.0 496 37.3
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 8.2e-79 298.9 452 42.7
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 5.9e-77 292.7 359 46.2
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 6.5e-76 289.3 467 35.5
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 1.7e-68 264.6 337 49.3
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.8e-62 244.6 355 42.5
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 3.8e-60 236.9 294 42.5
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 3.8e-60 236.9 242 54.5
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 3.2e-59 233.8 260 47.3
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 2.3e-57 227.6 236 52.5
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 1.2e-56 225.3 292 43.8
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 4.4e-56 223.4 272 47.8
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.9e-52 210.7 248 46.4
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 6.5e-52 209.5 277 44.8
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 4.2e-51 206.8 292 43.5
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 7.5e-48 196.1 229 44.1
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 3.1e-46 190.7 231 46.8
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 1.1e-43 182.2 133 65.4
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 7.2e-43 179.5 158 56.3
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 4.7e-42 176.8 233 46.8
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 4.4e-40 170.2 264 42.4
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 1.3e-39 168.7 227 45.8
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.4e-38 164.5 311 34.4
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 1.3e-36 158.7 388 34.5
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 1.4e-33 148.7 189 45.0
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.8e-33 148.3 167 49.1
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.3e-31 142.1 185 46.5
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 1.3e-31 142.1 183 46.4
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.4e-31 139.8 185 44.3
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 1.1e-30 139.0 148 48.6
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 1.1e-30 139.0 241 38.2
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.4e-30 138.7 185 45.9
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 9.2e-30 136.0 185 45.4
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 9.2e-30 136.0 185 45.4
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 9.2e-30 136.0 185 45.4
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 1.6e-26 125.2 125 51.2
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 8.9e-25 119.4 175 42.3
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 2.4e-22 111.3 104 57.7
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 3.5e-21 107.5 376 25.3
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.3e-20 105.5 224 36.2
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.0e-20 104.4 87 62.1
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 3.9e-20 104.0 191 35.1
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 5.1e-20 103.6 123 48.0
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 7.3e-19 99.8 103 53.4
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 9.5e-19 99.4 246 31.3
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 9.5e-19 99.4 103 52.4
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.4e-17 95.5 89 51.7
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 6.8e-17 93.2 98 51.0
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.4e-16 90.5 173 39.9
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 2.9e-15 87.8 190 37.4
Glyma.01G161051 Glycine max HOM05D003812 ORTHO05D004393 8.6e-12 76.3 102 45.1
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 9.6e-11 72.8 69 50.7
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 3.6e-10 70.9 94 45.7
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.1e-09 69.3 46 67.4
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 1.2e-08 65.9 79 48.1
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 1.5e-08 65.5 264 30.7
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 3.4e-08 64.3 195 31.3
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 4.4e-08 63.9 83 44.6
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 3.8e-07 60.8 45 62.2
FvH4_2g23680 Fragaria vesca HOM05D003812 ORTHO05D004393 4.9e-07 60.5 97 39.2
Cc06_g19280 Coffea canephora HOM05D003812 ORTHO05D004393 7.1e-06 56.6 99 42.4


User provided reference genes

Program Settings