Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 2.4e-292 1008.1 498 100.0
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.1e-212 743.4 475 79.6
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 1.9e-204 716.1 468 79.5
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 5.1e-157 558.5 396 69.4
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 1.3e-155 553.9 402 68.7
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.3e-155 553.9 391 69.3
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 2.8e-155 552.7 398 68.8
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 8.1e-155 551.2 411 66.9
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.0e-154 548.9 390 70.0
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.0e-154 548.9 390 69.5
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 5.3e-154 548.5 398 68.3
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 5.3e-154 548.5 390 70.3
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 6.9e-154 548.1 390 69.7
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 9.0e-154 547.7 390 69.7
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.6e-153 546.2 395 68.4
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 7.6e-153 544.7 408 66.2
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.7e-152 543.5 394 68.5
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 3.8e-152 542.3 391 68.5
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 4.9e-152 542.0 394 68.3
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 4.9e-152 542.0 396 67.2
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 6.4e-152 541.6 397 68.0
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 7.1e-151 538.1 394 68.5
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 7.1e-151 538.1 389 67.6
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 2.1e-150 536.6 400 67.2
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 2.7e-150 536.2 398 67.1
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 3.5e-150 535.8 387 69.0
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 1.0e-149 534.3 411 65.2
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 1.7e-149 533.5 408 65.2
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 6.6e-149 531.6 401 67.3
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 8.7e-149 531.2 403 66.3
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 1.5e-148 530.4 390 67.4
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 1.9e-148 530.0 406 66.3
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.9e-148 530.0 389 68.1
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 7.3e-148 528.1 451 61.2
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 7.3e-148 528.1 392 67.1
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 9.6e-148 527.7 387 67.2
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 9.6e-148 527.7 387 68.2
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 2.8e-147 526.2 397 66.0
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 2.8e-147 526.2 385 66.2
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.8e-146 523.5 445 59.6
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 2.4e-146 523.1 389 66.3
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 5.3e-146 521.9 395 63.8
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 5.3e-146 521.9 388 66.5
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 1.2e-145 520.8 400 65.0
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 3.4e-145 519.2 388 66.8
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 3.4e-145 519.2 397 65.2
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 5.8e-145 518.5 414 63.8
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 5.8e-145 518.5 393 65.6
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 2.2e-144 516.5 419 61.8
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 2.9e-144 516.2 389 65.3
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 3.8e-144 515.8 391 64.7
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 4.9e-144 515.4 388 67.5
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 1.4e-143 513.8 391 66.2
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 1.9e-143 513.5 409 65.5
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.9e-143 513.5 387 65.6
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 2.4e-143 513.1 388 66.0
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 4.2e-143 512.3 406 64.5
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 5.5e-143 511.9 388 64.4
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 7.1e-143 511.5 390 65.4
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 3.5e-142 509.2 395 64.8
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 3.5e-142 509.2 392 64.5
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 4.6e-142 508.8 397 63.5
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 6.0e-142 508.4 390 65.1
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 7.9e-142 508.1 389 64.3
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 1.0e-141 507.7 387 64.9
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 1.8e-141 506.9 390 64.1
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 1.8e-141 506.9 424 61.3
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 3.0e-141 506.1 402 64.7
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 3.9e-141 505.8 398 62.8
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 3.9e-141 505.8 422 60.4
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 6.7e-141 505.0 448 58.9
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 8.7e-141 504.6 392 64.0
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 8.7e-141 504.6 392 64.0
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 1.5e-140 503.8 417 61.6
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 1.3e-139 500.7 392 63.5
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 2.1e-139 500.0 394 63.2
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 2.1e-139 500.0 407 62.4
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 4.8e-139 498.8 404 63.4
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 6.2e-139 498.4 395 62.8
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 8.1e-139 498.0 362 69.1
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 1.4e-138 497.3 423 60.8
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 6.9e-138 495.0 394 63.7
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 9.0e-138 494.6 389 63.2
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 1.2e-137 494.2 390 64.4
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 2.0e-137 493.4 386 63.0
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 2.0e-137 493.4 424 61.1
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 2.6e-137 493.0 423 60.3
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 2.6e-137 493.0 448 58.5
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 3.4e-137 492.7 392 63.3
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 7.6e-137 491.5 393 63.4
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 7.6e-137 491.5 404 62.6
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 1.3e-136 490.7 411 61.1
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 1.7e-136 490.3 409 61.6
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 1.7e-136 490.3 409 61.6
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.1e-135 487.6 391 62.9
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 4.2e-135 485.7 418 61.0
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 5.5e-135 485.3 389 63.2
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.2e-134 484.2 398 62.3
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 6.0e-134 481.9 396 62.4
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 7.9e-134 481.5 400 63.0
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 7.9e-134 481.5 395 61.8
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.3e-133 480.7 404 62.1
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 2.3e-133 479.9 397 62.5
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 3.9e-133 479.2 391 63.2
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 8.7e-133 478.0 396 62.1
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 4.3e-132 475.7 391 62.7
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 5.7e-132 475.3 395 60.3
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 5.7e-132 475.3 391 62.4
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 1.6e-131 473.8 390 62.1
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 1.8e-130 470.3 392 59.9
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 5.3e-130 468.8 385 60.8
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 2.0e-129 466.8 407 58.5
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 2.6e-129 466.5 389 60.7
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 3.8e-128 462.6 402 60.4
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 1.9e-127 460.3 388 59.5
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 5.5e-127 458.8 394 58.9
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 4.6e-126 455.7 400 58.8
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 7.9e-126 454.9 391 59.8
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 5.1e-125 452.2 386 60.4
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 6.7e-125 451.8 386 58.3
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 3.3e-124 449.5 388 59.0
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 9.7e-124 448.0 389 58.9
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 1.4e-122 444.1 312 69.2
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 5.9e-121 438.7 290 72.1
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 1.2e-118 431.0 332 63.3
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 3.0e-117 426.4 398 57.0
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 2.5e-116 423.3 405 55.8
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.7e-110 403.3 385 56.1
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.2e-105 387.9 243 75.3
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.4e-98 364.4 283 64.3
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 1.2e-97 361.3 283 65.0
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.9e-95 354.0 245 69.8
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.2e-95 353.2 228 73.7
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 9.1e-90 335.1 396 47.0
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 2.7e-89 333.6 281 59.4
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.2e-86 324.7 365 47.4
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 9.8e-84 315.1 255 58.4
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 6.3e-83 312.4 274 53.6
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.2e-81 308.1 246 58.5
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 2.9e-80 303.5 238 65.5
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.9e-66 257.7 174 73.6
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 8.6e-64 248.8 187 69.0
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 5.1e-56 223.0 297 42.8
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 4.7e-54 216.5 157 67.5
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 4.1e-50 203.4 205 51.2
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 1.1e-47 195.3 189 55.0
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.2e-42 177.2 168 55.4
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.0e-40 170.6 145 60.0
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.9e-39 167.9 164 54.9
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 2.6e-36 157.5 231 36.4
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 3.5e-33 147.1 181 47.0
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 1.5e-31 141.7 81 74.1
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 6.9e-29 132.9 303 32.0
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 1.2e-28 132.1 97 68.0
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 2.6e-28 131.0 387 30.7
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 8.4e-27 125.9 205 35.6
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.3e-24 118.6 303 30.7
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 1.8e-24 118.2 245 35.5
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 5.1e-24 116.7 263 31.6
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 6.2e-22 109.8 132 47.0
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.1e-21 109.0 64 73.4
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.1e-21 109.0 64 73.4
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.1e-21 107.5 64 71.9
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 1.0e-19 102.4 172 34.9
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 9.3e-18 95.9 76 63.2
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 4.8e-14 83.6 98 45.9
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.4e-13 82.0 94 47.9
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 1.5e-12 78.6 73 56.2
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 4.2e-10 70.5 119 37.8
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 7.9e-09 66.2 38 76.3
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 6.7e-08 63.2 69 46.4


User provided reference genes

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