Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 2.1e-175 619.0 338 100.0
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 1.4e-153 546.6 292 97.6
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 1.1e-152 543.5 292 96.2
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 5.7e-144 514.6 290 93.1
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 2.2e-143 512.7 293 90.4
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 1.0e-132 477.2 293 82.9
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 5.0e-132 474.9 294 81.0
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 5.0e-132 474.9 294 81.0
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 5.5e-131 471.5 294 80.6
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 2.1e-130 469.5 294 80.6
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 2.1e-130 469.5 293 80.9
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 1.8e-129 466.5 293 81.2
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 3.0e-129 465.7 293 82.6
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 3.0e-129 465.7 292 80.5
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 4.0e-129 465.3 293 81.2
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 1.2e-128 463.8 293 80.9
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 2.0e-128 463.0 293 79.2
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 5.7e-128 461.5 293 79.9
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.3e-127 460.3 303 78.5
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 2.2e-127 459.5 293 80.2
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 3.7e-127 458.8 291 79.7
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 1.1e-126 457.2 294 78.9
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 1.8e-126 456.4 293 78.8
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 2.4e-126 456.1 294 79.3
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 5.4e-126 454.9 293 79.2
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 7.0e-126 454.5 293 78.2
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 1.2e-125 453.8 294 77.6
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 1.2e-125 453.8 295 79.3
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 3.5e-125 452.2 295 77.6
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 3.5e-125 452.2 295 77.6
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 3.5e-125 452.2 296 78.4
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 4.5e-125 451.8 294 79.6
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 4.5e-125 451.8 295 77.6
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 7.7e-125 451.1 290 79.0
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 1.0e-124 450.7 293 78.8
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 1.0e-124 450.7 296 79.1
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.7e-124 449.9 291 79.7
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 2.3e-124 449.5 294 79.6
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 3.8e-124 448.7 293 78.8
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 5.0e-124 448.4 294 78.9
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 9.5e-123 444.1 319 73.4
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 2.1e-122 443.0 291 78.4
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.8e-121 439.9 294 76.5
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 3.0e-121 439.1 323 71.5
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 6.8e-121 438.0 327 71.6
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 8.9e-121 437.6 296 76.0
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 1.5e-120 436.8 295 75.3
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 4.4e-120 435.3 295 75.3
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 7.5e-120 434.5 294 75.5
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 7.5e-120 434.5 294 75.9
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.7e-119 433.3 294 75.9
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 2.9e-119 432.6 293 74.4
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 4.9e-119 431.8 295 75.6
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 1.8e-118 429.9 294 74.8
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 3.2e-118 429.1 294 75.5
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 3.2e-118 429.1 295 74.6
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 1.2e-117 427.2 294 74.5
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 1.1e-115 420.6 294 74.5
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 1.1e-115 420.6 293 73.4
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 1.5e-115 420.2 328 69.8
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 3.3e-115 419.1 294 73.8
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 5.6e-115 418.3 294 73.5
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 7.3e-115 417.9 306 71.9
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 7.3e-115 417.9 306 71.9
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 1.6e-114 416.8 291 73.9
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 6.2e-114 414.8 306 71.9
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 1.8e-113 413.3 294 71.4
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 2.3e-113 412.9 294 72.8
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 4.0e-113 412.1 295 70.8
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 8.9e-113 411.0 295 70.5
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 1.5e-112 410.2 298 70.5
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 3.4e-112 409.1 317 67.8
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 5.8e-112 408.3 297 72.7
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 4.9e-111 405.2 295 69.5
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 8.3e-111 404.4 296 70.3
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.1e-110 404.1 295 71.5
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 7.0e-110 401.4 294 72.1
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 7.0e-110 401.4 294 70.7
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 1.2e-109 400.6 291 71.8
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 2.0e-109 399.8 305 70.2
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 6.0e-109 398.3 294 69.4
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 6.0e-109 398.3 293 70.0
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 7.8e-109 397.9 294 70.4
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 1.7e-108 396.7 295 69.2
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 1.7e-108 396.7 283 72.4
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.5e-107 393.7 292 69.9
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 1.5e-107 393.7 295 69.5
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.9e-107 393.3 321 65.7
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 3.3e-107 392.5 294 71.4
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 5.6e-107 391.7 292 69.5
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 1.6e-106 390.2 293 68.6
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 2.1e-106 389.8 292 69.5
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 1.1e-105 387.5 271 72.7
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 2.3e-105 386.3 296 67.9
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 1.2e-104 384.0 296 68.6
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 2.0e-104 383.3 291 66.7
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 2.6e-104 382.9 352 59.1
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 3.7e-103 379.0 309 64.4
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 4.9e-103 378.6 276 72.5
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 6.4e-103 378.3 292 67.5
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 4.1e-102 375.6 342 60.8
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 7.1e-102 374.8 297 63.3
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 3.5e-101 372.5 237 77.6
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 6.0e-101 371.7 237 78.5
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 7.8e-101 371.3 287 67.9
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 3.0e-100 369.4 288 68.1
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 7.3e-99 364.8 296 62.2
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 2.3e-97 359.8 295 64.1
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 5.2e-97 358.6 294 62.9
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 6.8e-97 358.2 238 72.7
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 1.5e-96 357.1 286 66.8
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.9e-94 350.1 295 63.1
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 2.1e-93 346.7 294 62.2
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 2.3e-92 343.2 301 62.1
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 3.3e-91 339.3 313 61.0
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 7.3e-91 338.2 239 70.3
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 2.9e-87 326.2 294 61.9
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 1.1e-86 324.3 196 82.1
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.1e-86 324.3 251 64.9
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 3.9e-84 315.8 294 62.2
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 5.1e-84 315.5 196 80.1
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 8.1e-82 308.1 294 58.8
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 1.1e-81 307.8 205 77.6
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 5.3e-81 305.4 287 62.0
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 9.0e-81 304.7 307 52.8
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.5e-80 303.9 293 54.6
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 2.4e-78 296.6 294 58.2
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 3.2e-78 296.2 301 54.2
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 3.9e-76 289.3 295 56.9
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 6.7e-76 288.5 275 57.1
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.9e-75 287.0 275 55.6
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 4.3e-75 285.8 217 71.9
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 1.1e-73 281.2 369 46.1
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 6.9e-73 278.5 207 69.1
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 1.3e-71 274.2 211 67.3
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 2.7e-69 266.5 330 49.1
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 1.0e-68 264.6 289 50.9
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 5.6e-67 258.8 288 52.8
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 4.8e-66 255.8 222 56.3
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 3.5e-61 239.6 197 62.4
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 5.9e-56 222.2 317 39.7
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 2.1e-53 213.8 179 65.4
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 6.1e-53 212.2 333 41.1
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 7.7e-48 195.3 122 77.0
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 3.1e-41 173.3 336 35.1
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 6.3e-34 149.1 101 75.2
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 1.7e-31 141.0 107 70.1
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 8.5e-31 138.7 309 34.6
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 3.7e-26 123.2 76 71.1
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 5.5e-22 109.4 100 64.0
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 1.0e-20 105.1 130 50.8
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 1.4e-20 104.8 82 70.7
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 2.0e-19 100.9 146 47.3
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 1.4e-17 94.7 60 75.0
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 7.0e-17 92.4 149 42.3
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 3.5e-16 90.1 331 29.6
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 8.6e-15 85.5 56 80.4
SEGI_18914 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 1.3e-07 61.6 99 40.4
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 5.0e-07 59.7 58 55.2
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 2.5e-06 57.4 54 55.6


User provided reference genes

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