Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026588.2 Cucumis melo HOM05D005478 ORTHO05D006426 1.8e-97 359.4 193 100.0
CsaV3_3G042880 Cucumis sativus L. HOM05D005478 ORTHO05D006426 5.5e-91 337.8 193 91.7
ClCG10G013780 Citrullus lanatus HOM05D005478 ORTHO05D006426 1.5e-85 319.7 193 87.0
Sed0022021 Sechium edule HOM05D005478 ORTHO05D006426 2.5e-59 232.6 193 68.4
QL02p074001 Quercus lobata HOM05D005478 ORTHO05D006426 4.0e-41 172.2 183 51.9
CiPaw.03G045600 Carya illinoinensis HOM05D005478 ORTHO05D006426 3.4e-40 169.1 189 49.7
GSVIVG01032384001 Vitis vinifera HOM05D005478 ORTHO05D006426 1.7e-39 166.8 179 52.0
Ciclev10016916m.g Citrus clementina HOM05D005478 ORTHO05D006426 1.6e-37 160.2 181 50.3
Prupe.3G293900 Prunus persica HOM05D005478 ORTHO05D006426 1.6e-37 160.2 185 48.1
CiPaw.04G029700 Carya illinoinensis HOM05D005478 ORTHO05D006426 2.0e-37 159.8 186 48.9
Duzib160G0719 Durio zibethinus HOM05D005478 ORTHO05D006426 5.9e-37 158.3 187 47.1
Cpa.g.sc108.77 Carica papaya HOM05D005478 ORTHO05D006426 2.3e-36 156.4 184 46.2
THA.LOC104825319 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 2.3e-36 156.4 180 45.0
Cfa007338 Carpinus fangiana HOM05D005478 ORTHO05D006426 2.9e-36 156.0 188 51.1
Haze_14759 Corylus avellana HOM05D005478 ORTHO05D006426 8.6e-36 154.5 189 49.7
COL.COLO4_30424 Corchorus olitorius HOM05D005478 ORTHO05D006426 3.6e-34 149.1 199 41.7
Actinidia36124 Actinidia chinensis HOM05D005478 ORTHO05D006426 1.0e-33 147.5 184 46.7
CARHR148890 Cardamine hirsuta HOM05D005478 ORTHO05D006426 1.0e-33 147.5 177 45.2
Hma1.2p1_0818F.1_g223270 Hydrangea macrophylla HOM05D005478 ORTHO05D006426 1.4e-33 147.1 181 42.5
TAR371G0105 Trochodendron aralioides HOM05D005478 ORTHO05D006426 4.0e-33 145.6 179 45.8
TWI36G1604 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 8.9e-33 144.4 194 44.3
Duzib235G1061 Durio zibethinus HOM05D005478 ORTHO05D006426 1.2e-32 144.1 188 44.1
MSTRG.3284 Avicennia marina HOM05D005478 ORTHO05D006426 2.6e-32 142.9 184 50.5
Atru.chr6.2431 Acer truncatum HOM05D005478 ORTHO05D006426 3.4e-32 142.5 178 43.8
MD09G1022900 Malus domestica HOM05D005478 ORTHO05D006426 3.4e-32 142.5 199 46.2
TWI12G0237 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 3.4e-32 142.5 194 42.8
Thhalv10004961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 4.4e-32 142.1 187 42.8
Sabra16G0222600 Salix brachista HOM05D005478 ORTHO05D006426 4.4e-32 142.1 180 45.0
TWI56G0849 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 4.4e-32 142.1 192 42.2
CANSAT64G0255 Cannabis sativa HOM05D005478 ORTHO05D006426 5.7e-32 141.7 188 47.3
Potri.001G343200 Populus trichocarpa HOM05D005478 ORTHO05D006426 5.7e-32 141.7 181 44.2
Sp2g16690 Schrenkiella parvula HOM05D005478 ORTHO05D006426 5.7e-32 141.7 202 39.6
Thhalv10027961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 7.5e-32 141.4 179 40.8
Lalb_Chr22g0360721 Lupinus albus HOM05D005478 ORTHO05D006426 9.8e-32 141.0 186 45.2
Thecc.06G091700 Theobroma cacao HOM05D005478 ORTHO05D006426 9.8e-32 141.0 196 43.9
MSTRG.15534 Avicennia marina HOM05D005478 ORTHO05D006426 1.3e-31 140.6 186 47.8
Aa31LG2G5140 Aethionema arabicum HOM05D005478 ORTHO05D006426 1.7e-31 140.2 191 41.4
TPR.G31952 Trifolium pratense HOM05D005478 ORTHO05D006426 1.1e-30 137.5 178 44.9
MD17G1022200 Malus domestica HOM05D005478 ORTHO05D006426 2.4e-30 136.3 199 46.7
VMungo0464G1533 Vigna mungo HOM05D005478 ORTHO05D006426 2.4e-30 136.3 180 44.4
Actinidia18441 Actinidia chinensis HOM05D005478 ORTHO05D006426 4.1e-30 135.6 188 43.6
Glyma.05G002400 Glycine max HOM05D005478 ORTHO05D006426 4.1e-30 135.6 179 43.0
FAN05G2721 Fragaria x ananassa HOM05D005478 ORTHO05D006426 5.4e-30 135.2 182 44.0
PGR142G0633 Punica granatum HOM05D005478 ORTHO05D006426 5.4e-30 135.2 190 40.0
TAR629G3442 Trochodendron aralioides HOM05D005478 ORTHO05D006426 5.4e-30 135.2 179 43.6
Gorai.006G097900 Gossypium raimondii HOM05D005478 ORTHO05D006426 7.0e-30 134.8 179 42.5
DCAR_011260 Daucus carota HOM05D005478 ORTHO05D006426 9.2e-30 134.4 183 43.2
Gohir.D09G082100 Gossypium hirsutum HOM05D005478 ORTHO05D006426 9.2e-30 134.4 180 42.8
FAN02G1690 Fragaria x ananassa HOM05D005478 ORTHO05D006426 1.2e-29 134.0 196 42.3
Gohir.A09G082300 Gossypium hirsutum HOM05D005478 ORTHO05D006426 1.6e-29 133.7 180 42.8
Manes.17G111100 Manihot esculenta HOM05D005478 ORTHO05D006426 3.5e-29 132.5 184 45.1
AUR62028419 Chenopodium quinoa HOM05D005478 ORTHO05D006426 5.9e-29 131.7 201 39.3
Medtr6g004420 Medicago truncatula HOM05D005478 ORTHO05D006426 7.8e-29 131.3 179 45.3
BraA09t35982Z Brassica rapa HOM05D005478 ORTHO05D006426 1.3e-28 130.6 182 38.5
AUR62041940 Chenopodium quinoa HOM05D005478 ORTHO05D006426 1.3e-28 130.6 192 41.1
Eucgr.I01730 Eucalyptus grandis HOM05D005478 ORTHO05D006426 1.3e-28 130.6 180 42.2
AL5G16940 Arabidopsis lyrata HOM05D005478 ORTHO05D006426 1.7e-28 130.2 187 40.1
arahy.Tifrunner.gnm1.ann1.47572L Arachis hypogaea HOM05D005478 ORTHO05D006426 2.3e-28 129.8 180 41.7
Ca_04142_v3 Cicer arietinum L. HOM05D005478 ORTHO05D006426 2.3e-28 129.8 177 44.6
FvH4_6g51790 Fragaria vesca HOM05D005478 ORTHO05D006426 2.9e-28 129.4 197 42.1
Lj2g0025845 Lotus japonicus HOM05D005478 ORTHO05D006426 3.9e-28 129.0 179 45.8
Sc07g0003180 Simmondsia chinensis HOM05D005478 ORTHO05D006426 3.9e-28 129.0 177 42.4
FAN14G4849 Fragaria x ananassa HOM05D005478 ORTHO05D006426 5.0e-28 128.6 197 42.1
unitig_88.g27693 Utricularia gibba HOM05D000631 ORTHO05D000524 5.0e-28 128.6 190 41.1
A09p03440 Brassica napus HOM05D005478 ORTHO05D006426 6.6e-28 128.3 182 38.5
Migut.K01412 Erythranthe guttata HOM05D005478 ORTHO05D006426 6.6e-28 128.3 178 43.3
FAN09G1593 Fragaria x ananassa HOM05D005478 ORTHO05D006426 6.6e-28 128.3 197 42.1
SGA_v2.0_scaffold47G17517 Striga asiatica HOM05D005478 ORTHO05D006426 6.6e-28 128.3 177 44.6
C07p36630 Brassica napus HOM05D005478 ORTHO05D006426 1.1e-27 127.5 187 38.5
Carub.0005s0595 Capsella rubella HOM05D005478 ORTHO05D006426 1.1e-27 127.5 186 38.2
Oeu033728.1 Olea europaea HOM05D005478 ORTHO05D006426 1.1e-27 127.5 194 41.8
Rhsim10G0014600 Rhododendron simsii HOM05D005478 ORTHO05D006426 1.1e-27 127.5 187 41.2
Duzib192G0894 Durio zibethinus HOM05D005478 ORTHO05D006426 1.9e-27 126.7 182 39.6
AT3G27520 Arabidopsis thaliana HOM05D005478 ORTHO05D006426 5.6e-27 125.2 196 36.7
BcaB04g19441 Brassica carinata HOM05D005478 ORTHO05D006426 4.7e-26 122.1 182 39.6
Glyma.19G002600 Glycine max HOM05D005478 ORTHO05D006426 4.7e-26 122.1 179 42.5
Lalb_Chr24g0403571 Lupinus albus HOM05D005478 ORTHO05D006426 4.7e-26 122.1 190 43.7
A06p41110 Brassica napus HOM05D005478 ORTHO05D006426 8.0e-26 121.3 183 37.2
BraA06t27034Z Brassica rapa HOM05D005478 ORTHO05D006426 8.0e-26 121.3 183 37.2
PSO478G1356 Papaver somniferum HOM05D005478 ORTHO05D006426 1.0e-25 120.9 185 39.5
RcHm_v2.0_Chr2g0173291 Rosa chinensis HOM05D005478 ORTHO05D006426 1.0e-25 120.9 141 46.1
vmacro05877 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 1.4e-25 120.6 218 35.8
PSO017G4510 Papaver somniferum HOM05D005478 ORTHO05D006426 1.8e-25 120.2 186 39.2
arahy.Tifrunner.gnm1.ann1.WAXE9D Arachis hypogaea HOM05D005478 ORTHO05D006426 2.3e-25 119.8 206 37.4
Hund15527 Selenicereus undatus HOM05D005478 ORTHO05D006426 2.3e-25 119.8 194 38.7
BcaC04g23900 Brassica carinata HOM05D005478 ORTHO05D006426 3.1e-25 119.4 180 36.7
C09p03650 Brassica napus HOM05D005478 ORTHO05D006426 3.1e-25 119.4 180 36.7
HPP92_006182 Vanilla planifolia HOM05D005478 ORTHO05D006426 6.8e-25 118.2 179 39.7
BolC7t44179H Brassica oleracea HOM05D005478 ORTHO05D006426 1.2e-24 117.5 187 36.9
Sopen02g038220 Solanum pennellii HOM05D005478 ORTHO05D006426 1.2e-24 117.5 181 39.2
BcaC06g33809 Brassica carinata HOM05D005478 ORTHO05D006426 1.5e-24 117.1 187 36.9
ATR0824G160 Amborella trichopoda HOM05D005478 ORTHO05D006426 2.0e-24 116.7 177 38.4
Solyc02g093450.3 Solanum lycopersicum HOM05D005478 ORTHO05D006426 2.0e-24 116.7 181 38.7
BcaC06g30982 Brassica carinata HOM05D005478 ORTHO05D006426 2.6e-24 116.3 184 37.0
BolC9t53284H Brassica oleracea HOM05D005478 ORTHO05D006426 3.4e-24 115.9 180 37.8
Lsat_1_v5_gn_0_18280 Lactuca sativa HOM05D005478 ORTHO05D006426 3.4e-24 115.9 191 39.8
PGSC0003DMG400012636 Solanum tuberosum HOM05D005478 ORTHO05D006426 3.4e-24 115.9 181 39.2
HanXRQChr07g0199031 Helianthus annuus HOM05D005478 ORTHO05D006426 4.4e-24 115.5 184 41.8
CSS0007505 Camellia sinensis var. sinensis HOM05D005478 ORTHO05D006426 9.8e-24 114.4 190 37.9
Psat1g053440 Pisum sativum HOM05D005478 ORTHO05D006426 1.7e-23 113.6 183 38.8
Aqoxy5G03740 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 4.9e-23 112.1 182 35.2
Nn3g16686 Nelumbo nucifera HOM05D005478 ORTHO05D006426 6.4e-23 111.7 179 40.8
Actinidia05981 Actinidia chinensis HOM05D005478 ORTHO05D006426 1.1e-22 110.9 187 40.6
Phvul.004G004600 Phaseolus vulgaris HOM05D005478 ORTHO05D006426 1.1e-22 110.9 180 41.7
HanXRQChr14g0451171 Helianthus annuus HOM05D005478 ORTHO05D006426 7.0e-22 108.2 184 39.1
Ah.02g128220 Amaranthus hybridus HOM05D005478 ORTHO05D006426 2.7e-21 106.3 180 37.2
Lsat_1_v5_gn_2_91160 Lactuca sativa HOM05D005478 ORTHO05D006426 2.7e-21 106.3 185 41.6
SGA_v2.0_scaffold30G12408 Striga asiatica HOM05D005478 ORTHO05D006426 2.7e-21 106.3 179 41.3
Peaxi162Scf00700g00430 Petunia axillaris HOM05D005478 ORTHO05D006426 4.6e-21 105.5 165 39.4
Oeu048609.1 Olea europaea HOM05D005478 ORTHO05D006426 7.8e-21 104.8 187 36.9
PSO063G0871 Papaver somniferum HOM05D005478 ORTHO05D006426 7.8e-21 104.8 183 33.9
ECA238G3024 Erigeron canadensis HOM05D005478 ORTHO05D006426 1.3e-20 104.0 185 38.9
vmacro18294 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 3.9e-20 102.4 222 34.7
MBI14_g36718_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 3.3e-19 99.4 179 36.9
THA.LOC104825211 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 7.3e-19 98.2 128 40.6
CDE09G0806 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 9.5e-19 97.8 185 31.4
Aqoxy1G02464 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 3.6e-18 95.9 162 35.2
PSO754G0087 Papaver somniferum HOM05D005478 ORTHO05D006426 6.2e-18 95.1 182 33.0
CDE02G4674 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 6.8e-17 91.7 177 31.1
Sed0020492 Sechium edule HOM05D005478 ORTHO05D006426 2.4e-14 83.2 75 64.0
Os02g0595300 Oryza sativa ssp. japonica HOM05D005478 ORTHO05D006426 7.1e-14 81.6 177 33.9
SEGI_00200 Sequoiadendron giganteum HOM05D005478 ORTHO05D006426 7.1e-14 81.6 167 31.7
Zm00001eb183740 Zea mays HOM05D044595 ORTHO05D006426 5.6e-11 72.0 177 31.1
Dinv33426 Davidia involucrata HOM05D005478 ORTHO05D006426 1.2e-10 70.9 70 51.4
Gohir.D05G130900 Gossypium hirsutum HOM05D005478 ORTHO05D006426 2.3e-09 66.6 122 35.2
Dinv25725 Davidia involucrata HOM05D005478 ORTHO05D006426 3.1e-09 66.2 129 34.9
Zm00001eb246060 Zea mays HOM05D044595 ORTHO05D006426 2.0e-08 63.5 195 27.7
Nitab4.5_0005593g0050 Nicotiana tabacum HOM05D005478 ORTHO05D006426 3.4e-08 62.8 159 28.9
EL10Ac6g14100 Beta vulgaris HOM05D005478 ORTHO05D006426 4.4e-08 62.4 133 39.1
Cc07_g01510 Coffea canephora HOM05D005478 ORTHO05D006426 4.4e-08 62.4 62 43.5
Nn3g16214 Nelumbo nucifera HOM05D005478 ORTHO05D006426 9.9e-08 61.2 50 48.0
Nitab4.5_0000326g0190 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.7e-07 60.5 52 53.8
SHI03806 Sapria himalayana HOM05D005478 ORTHO05D006426 1.1e-06 57.8 129 37.2
MBI10_g11211_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 9.2e-06 54.7 59 42.4


User provided reference genes

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