Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 3.7e-137 491.5 244 100.0
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 3.3e-117 425.2 271 83.0
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 1.8e-107 392.9 193 99.5
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 2.4e-104 382.5 193 95.9
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 5.1e-102 374.8 192 92.2
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 4.3e-101 371.7 193 92.2
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 7.4e-101 370.9 193 91.2
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 7.4e-101 370.9 193 90.2
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 9.6e-101 370.5 193 91.2
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 9.6e-101 370.5 193 90.7
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 1.3e-100 370.2 193 91.7
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 1.3e-100 370.2 193 91.7
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 1.6e-100 369.8 193 90.7
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 2.1e-100 369.4 193 90.7
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 3.7e-100 368.6 209 85.6
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 4.8e-100 368.2 193 90.7
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 6.2e-100 367.9 193 91.7
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 1.4e-99 366.7 193 90.2
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 1.8e-99 366.3 193 89.6
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 2.4e-99 365.9 193 90.2
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 3.1e-99 365.5 193 89.6
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 6.9e-99 364.4 190 91.1
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 1.5e-98 363.2 193 89.6
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 2.0e-98 362.8 193 89.6
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 2.0e-98 362.8 193 89.6
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 4.5e-98 361.7 191 89.5
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 5.8e-98 361.3 194 89.2
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 1.3e-97 360.1 193 88.1
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 1.3e-97 360.1 193 89.1
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 1.7e-97 359.8 193 88.1
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 2.9e-97 359.0 193 86.5
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 2.9e-97 359.0 190 89.5
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 6.4e-97 357.8 193 88.6
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 1.1e-96 357.1 190 89.5
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 1.4e-96 356.7 193 86.0
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 1.9e-96 356.3 193 86.0
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 2.4e-96 355.9 193 88.6
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 5.5e-96 354.8 190 88.9
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 7.1e-96 354.4 190 88.4
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 9.3e-96 354.0 190 88.4
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 9.3e-96 354.0 193 87.6
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 9.3e-96 354.0 193 87.6
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 1.2e-95 353.6 193 88.6
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 1.6e-95 353.2 194 87.1
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 3.5e-95 352.1 193 85.5
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 4.6e-95 351.7 193 85.0
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 6.0e-95 351.3 193 88.1
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 1.0e-94 350.5 193 85.5
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 1.8e-94 349.7 193 85.0
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 1.8e-94 349.7 193 85.0
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 2.3e-94 349.4 190 85.8
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 2.3e-94 349.4 190 85.8
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 6.7e-94 347.8 190 86.8
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 6.7e-94 347.8 190 86.8
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 8.7e-94 347.4 190 86.8
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 1.1e-93 347.1 193 83.4
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 1.1e-93 347.1 193 83.4
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 1.1e-93 347.1 193 83.4
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 1.1e-93 347.1 190 86.8
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 2.5e-93 345.9 193 84.5
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 2.5e-93 345.9 193 84.5
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 2.5e-93 345.9 197 84.3
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 3.3e-93 345.5 193 85.0
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 3.3e-93 345.5 193 85.0
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 4.3e-93 345.1 193 82.9
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 9.6e-93 344.0 193 83.9
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 1.3e-92 343.6 190 87.4
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 2.8e-92 342.4 190 85.8
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 4.8e-92 341.7 193 82.4
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 6.2e-92 341.3 190 84.2
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 8.2e-92 340.9 193 85.0
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 8.2e-92 340.9 182 88.5
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 1.1e-91 340.5 193 83.9
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 2.4e-91 339.3 193 82.9
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 4.0e-91 338.6 190 83.2
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 4.0e-91 338.6 232 73.3
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 1.5e-90 336.7 194 84.0
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.3e-89 333.6 210 77.6
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 2.9e-89 332.4 193 81.3
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 8.4e-89 330.9 193 81.9
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 8.4e-89 330.9 193 81.9
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 4.2e-88 328.6 247 68.8
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 4.6e-87 325.1 193 81.3
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 7.9e-87 324.3 170 90.0
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 6.7e-86 321.2 197 78.7
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 1.5e-85 320.1 199 77.9
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 1.5e-85 320.1 164 92.7
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 3.3e-85 318.9 197 76.1
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 4.8e-84 315.1 164 87.2
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 3.1e-83 312.4 193 77.7
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 4.5e-82 308.5 172 85.5
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 1.3e-81 307.0 177 80.8
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 2.2e-81 306.2 174 85.6
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 1.1e-80 303.9 190 78.9
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 1.4e-80 303.5 193 75.6
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 2.7e-79 299.3 159 89.9
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 4.6e-79 298.5 167 86.2
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 4.1e-75 285.4 197 72.1
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 3.2e-72 275.8 162 84.0
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 3.6e-71 272.3 158 85.4
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 4.4e-69 265.4 156 83.3
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 9.7e-69 264.2 134 92.5
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 9.1e-67 257.7 139 87.1
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 7.7e-66 254.6 193 65.8
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.1e-64 250.8 245 57.6
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 7.2e-64 248.1 170 69.4
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 2.7e-63 246.1 164 72.6
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 1.3e-60 237.3 170 67.1
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 5.3e-59 231.9 150 77.3
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 1.6e-58 230.3 170 64.1
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 1.0e-57 227.6 173 62.4
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 1.7e-57 226.9 190 63.7
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.2e-53 214.2 166 66.3
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 3.3e-53 212.6 178 56.7
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 5.7e-53 211.8 112 86.6
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 4.2e-48 195.7 142 61.3
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 2.6e-45 186.4 110 78.2
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 1.8e-43 180.3 142 57.7
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 7.2e-40 168.3 112 67.9
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 4.0e-38 162.5 144 49.3
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 9.5e-32 141.4 167 50.3
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 1.2e-31 141.0 135 57.0
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 4.1e-27 125.9 135 52.6
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 9.2e-27 124.8 135 55.6
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 6.0e-26 122.1 126 51.6
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.5e-24 116.7 220 40.0
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 6.8e-22 108.6 70 72.9
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 9.8e-21 104.8 177 41.2
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.1e-19 101.3 135 44.4
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 6.6e-17 92.0 53 84.9
COL.COLO4_22055 Corchorus olitorius HOM05D005644 ORTHO05D007092 3.6e-15 86.3 50 84.0
Hma1.2p1_0450F.1_g155660 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 8.1e-15 85.1 57 70.2
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 6.8e-14 82.0 57 66.7
Thecc.08G151500 Theobroma cacao HOM05D005644 ORTHO05D007092 1.0e-09 68.2 33 87.9
MBI16_g04464_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 9.5e-08 61.6 102 39.2


User provided reference genes

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