Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 3.1e-60 235.0 121 100.0
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 8.9e-23 110.5 109 63.3
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 2.6e-22 109.0 109 62.4
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 2.2e-21 105.9 109 61.5
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 3.2e-20 102.1 109 57.8
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 7.3e-17 90.9 102 55.9
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 1.2e-16 90.1 101 53.5
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 3.2e-12 75.5 98 43.9
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 1.2e-11 73.6 45 82.2
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 1.6e-11 73.2 101 46.5
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 2.1e-11 72.8 101 46.5
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 3.5e-11 72.0 107 45.8
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 3.5e-11 72.0 97 48.5
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 4.6e-11 71.6 106 47.2
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 7.8e-11 70.9 98 42.9
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 7.8e-11 70.9 108 42.6
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 1.0e-10 70.5 104 45.2
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 1.7e-10 69.7 110 43.6
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 2.3e-10 69.3 92 42.4
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 2.3e-10 69.3 89 46.1
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 2.3e-10 69.3 92 42.4
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 2.3e-10 69.3 92 42.4
MELO3C028918.2 Cucumis melo HOM05D004299 ORTHO05D003557 3.0e-10 68.9 48 70.8
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 3.0e-10 68.9 110 43.6
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 3.9e-10 68.6 101 43.6
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 5.1e-10 68.2 103 45.6
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 5.1e-10 68.2 101 43.6
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 6.6e-10 67.8 101 44.6
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 6.6e-10 67.8 97 46.4
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 6.6e-10 67.8 102 44.1
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 6.6e-10 67.8 99 40.4
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 6.6e-10 67.8 111 44.1
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 8.6e-10 67.4 101 42.6
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 8.6e-10 67.4 93 44.1
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 8.6e-10 67.4 103 41.7
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.1e-09 67.0 92 48.9
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 1.1e-09 67.0 113 41.6
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 1.1e-09 67.0 114 43.9
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 1.1e-09 67.0 106 42.5
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 1.1e-09 67.0 104 43.3
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 1.1e-09 67.0 103 43.7
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.5e-09 66.6 99 45.5
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 1.5e-09 66.6 101 41.6
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 1.5e-09 66.6 89 48.3
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.5e-09 66.6 89 43.8
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 1.9e-09 66.2 102 44.1
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 1.9e-09 66.2 106 45.3
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 2.5e-09 65.9 104 42.3
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.5e-09 65.9 99 40.4
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 2.5e-09 65.9 78 44.9
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 3.3e-09 65.5 103 44.7
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 3.3e-09 65.5 103 44.7
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 4.3e-09 65.1 111 39.6
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 4.3e-09 65.1 93 44.1
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 5.6e-09 64.7 118 39.0
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 5.6e-09 64.7 106 39.6
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 7.3e-09 64.3 105 44.8
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 7.3e-09 64.3 90 45.6
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 7.3e-09 64.3 92 46.7
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 9.5e-09 63.9 95 45.3
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 9.5e-09 63.9 102 42.2
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 1.2e-08 63.5 116 43.1
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 1.6e-08 63.2 99 40.4
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 1.6e-08 63.2 102 42.2
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.6e-08 63.2 98 39.8
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.6e-08 63.2 99 41.4
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 2.1e-08 62.8 88 44.3
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 3.6e-08 62.0 95 42.1
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 4.7e-08 61.6 111 41.4
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 6.2e-08 61.2 100 41.0
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 6.2e-08 61.2 92 43.5
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 6.2e-08 61.2 100 40.0
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 8.1e-08 60.8 92 41.3
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 8.1e-08 60.8 93 41.9
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 8.1e-08 60.8 101 40.6
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 8.1e-08 60.8 39 71.8
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.1e-07 60.5 115 40.9
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 1.1e-07 60.5 103 40.8
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 1.1e-07 60.5 77 45.5
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 1.1e-07 60.5 77 45.5
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 1.4e-07 60.1 95 37.9
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 1.4e-07 60.1 102 40.2
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.8e-07 59.7 92 42.4
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 1.8e-07 59.7 86 44.2
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 2.3e-07 59.3 33 84.8
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 2.3e-07 59.3 101 40.6
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 2.3e-07 59.3 96 39.6
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 2.3e-07 59.3 39 69.2
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 2.3e-07 59.3 39 69.2
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 3.1e-07 58.9 91 42.9
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 4.0e-07 58.5 45 62.2
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 4.0e-07 58.5 96 40.6
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.0e-07 58.5 103 39.8
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 5.2e-07 58.2 104 43.3
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 5.2e-07 58.2 117 37.6
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 5.2e-07 58.2 46 60.9
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 5.2e-07 58.2 39 69.2
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 6.8e-07 57.8 97 41.2
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 8.9e-07 57.4 89 41.6
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 1.2e-06 57.0 75 44.0
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 1.2e-06 57.0 98 36.7
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 1.5e-06 56.6 86 40.7
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.5e-06 56.6 97 39.2
SGA_v2.0_scaffold50G18437 Striga asiatica HOM05D024109 ORTHO05D003557 1.5e-06 56.6 33 78.8
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 2.0e-06 56.2 96 37.5
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 2.0e-06 56.2 94 42.6
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 2.6e-06 55.8 96 37.5
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 2.6e-06 55.8 46 56.5
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 3.4e-06 55.5 100 40.0
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 5.8e-06 54.7 105 41.0
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 5.8e-06 54.7 40 65.0
ATR0149G001 Amborella trichopoda HOM05D033261 ORTHO05D003557 7.6e-06 54.3 85 36.5
Zm00001eb251590 Zea mays HOM05D021310 ORTHO05D003557 7.6e-06 54.3 40 65.0
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 9.9e-06 53.9 96 36.5
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 9.9e-06 53.9 96 36.5
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 9.9e-06 53.9 96 36.5
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 9.9e-06 53.9 96 36.5
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 9.9e-06 53.9 96 36.5
MELO3C029241.2 Cucumis melo HOM05D004299 ORTHO05D169927 9.9e-06 53.9 37 78.4
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 9.9e-06 53.9 35 71.4


User provided reference genes

Program Settings