Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 4.1e-164 581.6 366 100.0
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 3.0e-146 522.3 369 91.1
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 6.3e-104 381.7 395 65.6
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 2.3e-58 230.3 309 55.0
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 5.4e-39 166.0 359 35.4
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 8.6e-37 158.7 368 34.8
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 8.6e-37 158.7 337 37.4
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 3.3e-36 156.8 344 35.2
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 5.6e-36 156.0 297 39.4
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 5.6e-36 156.0 320 37.2
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 2.1e-35 154.1 377 32.9
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 4.7e-35 152.9 288 36.5
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 1.1e-34 151.8 396 33.8
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 2.3e-34 150.6 332 36.1
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 2.3e-34 150.6 315 37.5
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 4.0e-34 149.8 401 33.2
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 5.2e-34 149.4 421 33.3
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 1.2e-33 148.3 313 36.7
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 2.0e-33 147.5 323 35.9
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 2.0e-33 147.5 409 33.7
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 3.4e-33 146.7 385 32.5
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 4.4e-33 146.4 328 33.5
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 5.8e-33 146.0 315 36.5
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 7.5e-33 145.6 325 35.4
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 9.8e-33 145.2 320 35.9
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 2.2e-32 144.1 372 33.3
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 4.9e-32 142.9 368 33.7
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 6.4e-32 142.5 326 34.0
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 6.4e-32 142.5 357 34.7
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 1.1e-31 141.7 286 38.1
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 1.4e-31 141.4 307 36.2
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 1.4e-31 141.4 323 34.7
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 1.4e-31 141.4 348 34.8
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 5.4e-31 139.4 310 36.1
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 7.1e-31 139.0 396 30.3
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 2.7e-30 137.1 347 34.3
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 3.5e-30 136.7 351 34.8
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 4.6e-30 136.3 351 33.6
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 4.6e-30 136.3 298 42.3
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 1.0e-29 135.2 386 36.0
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.0e-29 135.2 353 33.4
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.0e-29 135.2 351 34.2
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.0e-29 135.2 328 33.2
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 1.7e-29 134.4 357 35.3
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.7e-29 134.4 328 33.2
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 3.0e-29 133.7 328 32.9
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 3.0e-29 133.7 317 36.0
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 3.9e-29 133.3 348 34.8
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 3.9e-29 133.3 325 33.8
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 3.3e-28 130.2 323 32.8
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 7.3e-28 129.0 310 33.9
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 1.2e-27 128.3 391 31.5
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 1.2e-27 128.3 393 33.3
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 1.2e-27 128.3 345 33.9
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 3.6e-27 126.7 313 32.9
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 8.1e-27 125.6 324 33.3
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 1.1e-26 125.2 304 33.6
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 1.4e-26 124.8 296 34.1
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 2.3e-26 124.0 396 30.1
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 3.1e-26 123.6 334 35.0
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 4.0e-26 123.2 316 35.4
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 3.4e-25 120.2 303 33.0
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 5.8e-25 119.4 298 34.6
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 4.9e-24 116.3 325 32.9
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 6.4e-24 115.9 316 31.0
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 6.4e-24 115.9 308 39.9
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.1e-23 115.2 352 37.5
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 1.4e-23 114.8 315 37.1
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.9e-23 114.4 289 40.8
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 1.9e-23 114.4 308 32.1
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 3.2e-23 113.6 355 32.4
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 4.1e-23 113.2 309 32.7
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 4.1e-23 113.2 344 29.7
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 4.6e-22 109.8 352 31.5
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 7.8e-22 109.0 306 31.4
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 1.3e-21 108.2 243 37.0
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 3.0e-21 107.1 303 37.3
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 3.0e-21 107.1 268 34.7
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 3.0e-21 107.1 368 26.6
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 6.6e-21 105.9 344 30.8
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 8.6e-21 105.5 297 35.4
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 4.3e-20 103.2 350 28.3
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 5.6e-20 102.8 302 31.5
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 9.6e-20 102.1 307 37.5
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 2.1e-19 100.9 348 31.0
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 4.7e-19 99.8 304 35.9
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 8.1e-19 99.0 273 33.0
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 5.2e-18 96.3 355 31.8
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 7.6e-17 92.4 347 27.7
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 4.9e-16 89.7 177 31.1
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 6.4e-16 89.4 170 30.6
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 1.9e-15 87.8 345 25.5
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 5.4e-15 86.3 176 40.9
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 5.4e-15 86.3 289 28.4
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 2.1e-14 84.3 300 29.3
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 2.7e-14 84.0 278 27.7
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 7.8e-14 82.4 233 32.2
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 1.0e-13 82.0 48 89.6
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 3.0e-13 80.5 172 40.7
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 3.0e-13 80.5 51 84.3
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 3.0e-13 80.5 51 84.3
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 3.0e-13 80.5 298 27.2
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 5.1e-13 79.7 47 89.4
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 5.1e-13 79.7 47 89.4
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 5.1e-13 79.7 51 84.3
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 5.1e-13 79.7 51 84.3
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 5.1e-13 79.7 47 89.4
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 1.1e-12 78.6 51 84.3
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 1.5e-12 78.2 242 28.1
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 3.3e-12 77.0 47 85.1
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 4.3e-12 76.6 46 87.0
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 4.3e-12 76.6 44 90.9
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 4.3e-12 76.6 159 40.3
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 4.3e-12 76.6 159 40.3
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 4.3e-12 76.6 44 90.9
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 9.6e-12 75.5 43 90.7
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 9.6e-12 75.5 44 88.6
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 1.6e-11 74.7 64 67.2
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 1.6e-11 74.7 64 67.2
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 1.6e-11 74.7 157 38.9
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 3.6e-11 73.6 300 33.3
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 3.6e-11 73.6 275 29.8
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 4.8e-11 73.2 296 31.4
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 1.8e-10 71.2 272 31.2
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 2.4e-10 70.9 284 30.3
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 5.3e-10 69.7 285 35.1
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 9.0e-10 68.9 288 32.6
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 1.3e-08 65.1 174 33.9
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 2.2e-08 64.3 80 35.0
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 3.8e-08 63.5 100 34.0
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 1.1e-07 62.0 248 27.4
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 3.5e-06 57.0 176 33.5
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 7.9e-06 55.8 164 33.5


User provided reference genes

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