Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 3.5e-138 495.0 252 100.0
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 8.4e-108 394.0 252 82.5
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 7.1e-107 391.0 240 83.8
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 7.3e-104 380.9 251 79.7
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 2.4e-38 163.3 264 42.8
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 1.9e-35 153.7 254 42.9
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.4e-33 147.5 276 38.4
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 7.5e-32 141.7 279 38.7
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 2.2e-31 140.2 267 37.5
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 1.1e-30 137.9 271 35.8
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 4.1e-30 136.0 266 38.0
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 6.6e-28 128.6 253 38.3
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 2.5e-27 126.7 264 35.6
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 1.2e-26 124.4 264 37.5
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.1e-25 119.8 255 36.1
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.2e-24 117.9 272 34.9
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.6e-24 116.7 255 36.9
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 7.5e-24 115.2 279 32.3
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.3e-23 114.4 272 34.2
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 3.7e-23 112.8 279 33.0
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.4e-22 110.9 255 35.3
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 4.1e-22 109.4 269 34.2
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 7.0e-22 108.6 277 33.9
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 7.8e-21 105.1 282 32.6
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 7.8e-21 105.1 277 33.2
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.3e-20 104.4 276 32.6
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 1.7e-20 104.0 264 33.7
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 5.0e-20 102.4 271 32.8
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 6.6e-20 102.1 256 32.4
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 8.6e-20 101.7 280 33.2
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 8.6e-20 101.7 274 32.1
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 8.6e-20 101.7 273 32.6
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 8.6e-20 101.7 279 33.7
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 8.6e-20 101.7 277 32.9
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 1.1e-19 101.3 275 32.7
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 1.9e-19 100.5 283 33.6
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 3.3e-19 99.8 267 33.0
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.3e-19 99.8 278 32.4
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 9.5e-19 98.2 258 31.8
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.6e-18 97.4 260 34.2
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.6e-18 97.4 263 35.4
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 2.8e-18 96.7 277 31.0
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 3.6e-18 96.3 275 32.0
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 4.7e-18 95.9 280 32.5
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 6.2e-18 95.5 279 32.6
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.4e-17 94.4 274 33.2
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.4e-17 94.4 277 31.8
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 1.8e-17 94.0 283 30.4
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 5.2e-17 92.4 264 29.9
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.2e-16 91.3 279 32.6
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.2e-16 91.3 289 32.2
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 1.2e-16 91.3 257 31.5
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 1.5e-16 90.9 284 30.3
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.5e-16 90.9 277 29.6
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 1.5e-16 90.9 281 28.8
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.0e-16 90.5 281 28.8
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 2.6e-16 90.1 283 29.0
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.6e-16 90.1 274 32.1
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.6e-16 90.1 274 32.1
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 3.4e-16 89.7 279 31.2
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 7.5e-16 88.6 279 30.8
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 1.3e-15 87.8 278 28.1
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.9e-15 86.7 228 32.0
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 8.3e-15 85.1 263 30.8
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.1e-14 84.7 91 50.5
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.4e-14 84.3 272 31.6
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 1.4e-14 84.3 283 30.0
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.4e-14 84.3 102 51.0
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.4e-14 83.6 273 31.1
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 2.4e-14 83.6 260 31.2
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 3.2e-14 83.2 269 30.5
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 3.2e-14 83.2 69 62.3
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 5.4e-14 82.4 256 30.9
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 7.1e-14 82.0 283 29.3
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 7.1e-14 82.0 250 33.6
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 1.2e-13 81.3 245 31.0
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 2.7e-13 80.1 281 29.9
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 2.7e-13 80.1 277 29.2
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.5e-13 79.7 252 30.6
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 6.0e-13 79.0 278 29.5
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 7.8e-13 78.6 283 30.4
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 7.8e-13 78.6 263 30.0
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.0e-12 78.2 253 30.0
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 1.0e-12 78.2 277 27.4
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 1.0e-12 78.2 277 28.9
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.3e-12 77.8 266 27.8
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.3e-12 77.8 280 29.6
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 1.7e-12 77.4 257 30.7
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 2.3e-12 77.0 248 29.8
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 3.0e-12 76.6 276 31.2
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 3.0e-12 76.6 225 32.4
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 3.0e-12 76.6 278 30.6
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 6.6e-12 75.5 264 29.2
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 6.6e-12 75.5 294 28.6
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 4.3e-11 72.8 226 32.7
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 7.3e-11 72.0 243 30.0
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 7.3e-11 72.0 254 29.1
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 7.3e-11 72.0 286 28.7
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 1.6e-10 70.9 266 29.3
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 1.6e-10 70.9 278 28.1
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.8e-10 70.1 105 41.0
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 3.6e-10 69.7 252 29.0
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 6.2e-10 68.9 261 28.4
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.4e-09 67.8 75 50.7
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 3.1e-09 66.6 96 40.6
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 3.1e-09 66.6 121 41.3
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 4.0e-09 66.2 237 28.7
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 4.0e-09 66.2 251 29.1
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 6.8e-09 65.5 241 26.6
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 8.9e-09 65.1 90 41.1
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.2e-08 64.7 253 28.5
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 2.0e-08 63.9 235 26.8
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 2.6e-08 63.5 291 26.1
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 5.8e-08 62.4 102 39.2
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 5.8e-08 62.4 74 43.2
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 7.6e-08 62.0 214 26.2
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 7.6e-08 62.0 128 35.2
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 9.9e-08 61.6 248 27.0
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.7e-07 60.8 202 31.2
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.7e-07 60.8 109 36.7
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 2.2e-07 60.5 65 49.2
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 2.9e-07 60.1 124 37.1
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 6.4e-07 58.9 78 42.3
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.4e-07 58.9 78 42.3
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.4e-07 58.9 78 42.3
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.4e-07 58.9 78 42.3
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 8.3e-07 58.5 147 34.7
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 8.3e-07 58.5 195 29.7
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.1e-06 58.2 157 32.5
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 1.1e-06 58.2 157 32.5
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 1.4e-06 57.8 223 28.7
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.4e-06 57.8 272 25.7
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 1.9e-06 57.4 114 35.1
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 2.4e-06 57.0 126 34.1
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 4.1e-06 56.2 60 51.7
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 5.4e-06 55.8 167 30.5
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 7.1e-06 55.5 267 27.3
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 7.1e-06 55.5 252 25.4
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 9.2e-06 55.1 65 44.6


User provided reference genes

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