Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026518.2 Cucumis melo HOM05D006984 ORTHO05D008773 1.6e-138 496.1 250 100.0
CsaV3_6G035930 Cucumis sativus L. HOM05D006984 ORTHO05D008773 1.6e-127 459.5 258 91.1
Sed0024892 Sechium edule HOM05D006984 ORTHO05D008773 9.5e-104 380.6 247 78.9
ClCG08G009180 Citrullus lanatus HOM05D006984 ORTHO05D008773 4.0e-102 375.2 278 74.5
Cpa.g.sc26.14 Carica papaya HOM05D006984 ORTHO05D008773 3.6e-79 298.9 225 65.8
AT1G76450 Arabidopsis thaliana HOM05D006984 ORTHO05D008773 2.0e-77 293.1 245 60.0
AL2G36590 Arabidopsis lyrata HOM05D006984 ORTHO05D008773 4.5e-77 292.0 211 68.7
Ciclev10001894m.g Citrus clementina HOM05D006984 ORTHO05D008773 7.6e-77 291.2 249 60.6
QL02p015743 Quercus lobata HOM05D006984 ORTHO05D008773 1.3e-76 290.4 193 70.5
BcaC08g47243 Brassica carinata HOM05D006984 ORTHO05D008773 2.2e-76 289.7 197 72.1
Sp5g31620 Schrenkiella parvula HOM05D006984 ORTHO05D008773 6.4e-76 288.1 220 64.1
TWI56G0056 Tripterygium wilfordii HOM05D006984 ORTHO05D008773 6.4e-76 288.1 193 71.5
GSVIVG01013427001 Vitis vinifera HOM05D006984 ORTHO05D008773 8.4e-76 287.7 193 69.9
BolC6t40095H Brassica oleracea HOM05D006984 ORTHO05D008773 1.4e-75 287.0 197 71.1
Carub.0002s2337 Capsella rubella HOM05D006984 ORTHO05D008773 1.4e-75 287.0 221 64.3
Atru.chr13.60 Acer truncatum HOM05D006984 ORTHO05D008773 2.4e-75 286.2 254 57.5
BraA07t31741Z Brassica rapa HOM05D006984 ORTHO05D008773 3.2e-75 285.8 197 70.6
MD16G1283100 Malus domestica HOM05D006984 ORTHO05D008773 7.1e-75 284.6 245 55.5
Dinv13757 Davidia involucrata HOM05D006984 ORTHO05D008773 2.1e-74 283.1 197 68.0
VMungo1309G1928 Vigna mungo HOM05D006984 ORTHO05D008773 2.1e-74 283.1 250 60.4
Psat5g008560 Pisum sativum HOM05D006984 ORTHO05D008773 3.5e-74 282.3 193 68.9
RcHm_v2.0_Chr7g0216691 Rosa chinensis HOM05D006984 ORTHO05D008773 7.9e-74 281.2 260 57.3
BcaC08g47152 Brassica carinata HOM05D006984 ORTHO05D008773 1.8e-73 280.0 197 70.6
Manes.05G127800 Manihot esculenta HOM05D006984 ORTHO05D008773 2.3e-73 279.6 272 57.0
Medtr3g116110 Medicago truncatula HOM05D006984 ORTHO05D008773 2.3e-73 279.6 195 67.7
C06p50690 Brassica napus HOM05D006984 ORTHO05D008773 3.0e-73 279.3 189 71.4
Aa31LG4G6540 Aethionema arabicum HOM05D006984 ORTHO05D008773 3.9e-73 278.9 195 68.2
TPR.G38185 Trifolium pratense HOM05D006984 ORTHO05D008773 3.9e-73 278.9 251 57.4
FAN18G2056 Fragaria x ananassa HOM05D006984 ORTHO05D008773 5.1e-73 278.5 197 68.0
Thecc.08G099800 Theobroma cacao HOM05D006984 ORTHO05D008773 5.1e-73 278.5 187 71.7
Ca_15385_v3 Cicer arietinum L. HOM05D006984 ORTHO05D008773 8.7e-73 277.7 234 60.7
FvH4_5g26100 Fragaria vesca HOM05D006984 ORTHO05D008773 1.1e-72 277.3 258 56.6
CARHR070010 Cardamine hirsuta HOM05D006984 ORTHO05D008773 1.5e-72 276.9 220 61.8
A07p42120 Brassica napus HOM05D006984 ORTHO05D008773 1.9e-72 276.6 195 69.2
Eucgr.F01822 Eucalyptus grandis HOM05D006984 ORTHO05D008773 3.3e-72 275.8 191 67.0
Lj1g0018204 Lotus japonicus HOM05D006984 ORTHO05D008773 1.6e-71 273.5 258 58.1
THA.LOC104813736 Tarenaya hassleriana HOM05D006984 ORTHO05D008773 2.8e-71 272.7 256 56.6
Duzib116G0393 Durio zibethinus HOM05D006984 ORTHO05D008773 4.8e-71 271.9 197 67.5
Glyma.04G014500 Glycine max HOM05D006984 ORTHO05D008773 4.8e-71 271.9 199 68.8
Phvul.009G008400 Phaseolus vulgaris HOM05D006984 ORTHO05D008773 8.1e-71 271.2 195 69.7
CiPaw.07G133500 Carya illinoinensis HOM05D006984 ORTHO05D008773 1.4e-70 270.4 184 67.9
Glyma.06G014500 Glycine max HOM05D006984 ORTHO05D008773 1.4e-70 270.4 197 68.0
Prupe.5G005500 Prunus persica HOM05D006984 ORTHO05D008773 1.8e-70 270.0 232 60.3
Potri.005G256600 Populus trichocarpa HOM05D006984 ORTHO05D008773 4.0e-70 268.9 184 69.0
Sabra05G0198700 Salix brachista HOM05D006984 ORTHO05D008773 5.3e-70 268.5 193 66.8
Cfa014138 Carpinus fangiana HOM05D006984 ORTHO05D008773 2.0e-69 266.5 211 63.0
Thhalv10019042m.g Eutrema salsugineum HOM05D006984 ORTHO05D008773 7.6e-69 264.6 195 67.2
AUR62024096 Chenopodium quinoa HOM05D006984 ORTHO05D008773 9.9e-69 264.2 197 62.4
AUR62035170 Chenopodium quinoa HOM05D006984 ORTHO05D008773 9.9e-69 264.2 230 57.4
CANSAT25G0748 Cannabis sativa HOM05D006984 ORTHO05D008773 2.2e-68 263.1 252 55.6
vmacro21767 Vaccinium macrocarpon HOM05D006984 ORTHO05D008773 2.2e-68 263.1 193 63.7
TAR628G1538 Trochodendron aralioides HOM05D006984 ORTHO05D008773 2.9e-68 262.7 197 64.5
HanXRQChr09g0241901 Helianthus annuus HOM05D006984 ORTHO05D008773 3.8e-68 262.3 217 58.1
Peaxi162Scf00064g01321 Petunia axillaris HOM05D006984 ORTHO05D008773 6.4e-68 261.5 193 64.8
CAN.G208.41 Capsicum annuum HOM05D006984 ORTHO05D008773 1.4e-67 260.4 197 62.9
Lsat_1_v5_gn_9_48361 Lactuca sativa HOM05D006984 ORTHO05D008773 1.4e-67 260.4 196 62.8
ECA232G4329 Erigeron canadensis HOM05D006984 ORTHO05D008773 9.3e-67 257.7 242 52.9
Lalb_Chr23g0265511 Lupinus albus HOM05D006984 ORTHO05D008773 1.6e-66 256.9 193 66.3
arahy.Tifrunner.gnm1.ann1.H7AW2T Arachis hypogaea HOM05D006984 ORTHO05D008773 2.7e-66 256.1 241 55.2
FAN13G1472 Fragaria x ananassa HOM05D006984 ORTHO05D008773 2.7e-66 256.1 292 49.3
CSS0020436 Camellia sinensis var. sinensis HOM05D006984 ORTHO05D008773 4.6e-66 255.4 193 62.7
Nn6g31626 Nelumbo nucifera HOM05D006984 ORTHO05D008773 6.0e-66 255.0 193 62.2
arahy.Tifrunner.gnm1.ann1.QT2TB5 Arachis hypogaea HOM05D006984 ORTHO05D008773 7.9e-66 254.6 242 54.5
Actinidia17077 Actinidia chinensis HOM05D006984 ORTHO05D008773 1.3e-65 253.8 188 62.8
EL10Ac1g01871 Beta vulgaris HOM05D006984 ORTHO05D008773 1.8e-65 253.4 214 58.9
Hma1.2p1_0489F.1_g164090 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 2.3e-65 253.1 176 65.9
Os08g0512500 Oryza sativa ssp. japonica HOM05D006984 ORTHO05D008773 8.7e-65 251.1 195 61.0
FAN08G1099 Fragaria x ananassa HOM05D006984 ORTHO05D008773 1.1e-64 250.8 249 54.6
Lj3P797T41 Lonicera japonica HOM05D006984 ORTHO05D008773 1.9e-64 250.0 161 69.6
Lj4A811G120 Lonicera japonica HOM05D006984 ORTHO05D008773 1.9e-64 250.0 161 69.6
Gorai.002G221600 Gossypium raimondii HOM05D006984 ORTHO05D008773 2.5e-64 249.6 200 61.5
Solyc12g094720.3 Solanum lycopersicum HOM05D006984 ORTHO05D008773 3.3e-64 249.2 217 55.8
Sopen12g031620 Solanum pennellii HOM05D006984 ORTHO05D008773 3.3e-64 249.2 217 55.8
PGSC0003DMG400029399 Solanum tuberosum HOM05D006984 ORTHO05D008773 5.6e-64 248.4 217 55.8
Gohir.A01G188600 Gossypium hirsutum HOM05D006984 ORTHO05D008773 7.4e-64 248.1 200 61.0
Hund01834 Selenicereus undatus HOM05D006984 ORTHO05D008773 9.6e-64 247.7 170 67.6
Cc10_g00260 Coffea canephora HOM05D006984 ORTHO05D008773 1.3e-63 247.3 165 67.9
FAN04G1410 Fragaria x ananassa HOM05D006984 ORTHO05D008773 1.3e-63 247.3 265 53.2
Gohir.D01G180900 Gossypium hirsutum HOM05D006984 ORTHO05D008773 1.3e-63 247.3 200 61.0
Sc15g0004070 Simmondsia chinensis HOM05D006984 ORTHO05D008773 1.3e-63 247.3 162 67.9
CDE05G0055 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 1.6e-63 246.9 166 68.7
CDE05G2674 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 2.8e-63 246.1 219 57.5
MBI04_g31208_MAGBIO Magnolia biondii HOM05D006984 ORTHO05D008773 2.8e-63 246.1 193 59.1
Aqoxy6G02992 Aquilegia oxysepala HOM05D006984 ORTHO05D008773 4.8e-63 245.4 192 59.9
MSTRG.24516 Avicennia marina HOM05D006984 ORTHO05D008773 6.2e-63 245.0 196 58.2
Haze_22863 Corylus avellana HOM05D006984 ORTHO05D008773 6.2e-63 245.0 204 61.3
Oeu035863.2 Olea europaea HOM05D006984 ORTHO05D008773 1.4e-62 243.8 192 58.9
COL.COLO4_12298 Corchorus olitorius HOM05D006984 ORTHO05D008773 2.4e-62 243.0 201 61.7
Nitab4.5_0000407g0010 Nicotiana tabacum HOM05D006984 ORTHO05D008773 2.4e-62 243.0 182 62.6
PSO541G1597 Papaver somniferum HOM05D006984 ORTHO05D008773 1.3e-60 237.3 197 56.3
PGR083G2821 Punica granatum HOM05D006984 ORTHO05D008773 6.5e-60 235.0 206 58.3
SGA_v2.0_scaffold220G42646 Striga asiatica HOM05D006984 ORTHO05D008773 1.1e-59 234.2 185 58.4
Migut.N02987 Erythranthe guttata HOM05D006984 ORTHO05D008773 3.2e-59 232.6 254 47.6
ATR0001G027 Amborella trichopoda HOM05D006984 ORTHO05D008773 1.9e-56 223.4 185 57.3
Rhsim06G0003200 Rhododendron simsii HOM05D006984 ORTHO05D008773 4.8e-55 218.8 297 43.8
unitig_22.g5726 Utricularia gibba HOM05D006984 ORTHO05D008773 1.8e-54 216.9 209 51.7
Hma1.2p1_0489F.1_g164100 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 1.0e-52 211.1 125 74.4
Nitab4.5_0003423g0020 Nicotiana tabacum HOM05D006984 ORTHO05D008773 4.3e-48 195.7 186 53.2
Pp3c4_15070 Physcomitrium patens HOM05D006984 ORTHO05D008773 4.3e-48 195.7 195 45.6
Mapoly0008s0218 Marchantia polymorpha HOM05D006984 ORTHO05D008773 2.0e-45 186.8 192 46.9
AagrBONN_evm.TU.Sc2ySwM_117.1863 Anthoceros agrestis HOM05D006984 ORTHO05D008773 2.7e-42 176.4 162 51.2
Ah.11g041950 Amaranthus hybridus HOM05D006984 ORTHO05D008773 8.2e-39 164.9 132 60.6
SMO245G0004 Selaginella moellendorffii HOM05D006984 ORTHO05D008773 2.5e-35 153.3 169 42.0
CBR_g51937 Chara braunii HOM05D006984 ORTHO05D008773 6.7e-33 145.2 156 43.6
Zm00001eb035340 Zea mays HOM05D006984 ORTHO05D008773 1.7e-31 140.6 134 53.7
Medtr6g034285 Medicago truncatula HOM05D000394 ORTHO05D008773 1.6e-26 124.0 66 81.8
Cre10.g446350 Chlamydomonas reinhardtii HOM05D006984 ORTHO05D008773 2.2e-23 113.6 228 32.9
PGSC0003DMG400008742 Solanum tuberosum HOM05D006984 ORTHO05D008773 5.3e-22 109.0 105 52.4
PGSC0003DMG400021762 Solanum tuberosum HOM05D006984 ORTHO05D008773 4.5e-21 105.9 90 56.7
PRCOL_00004638 Prasinoderma coloniale HOM05D006984 ORTHO05D008773 7.7e-21 105.1 163 38.0
MCO13G452 Micromonas commoda HOM05D006984 ORTHO05D008773 1.7e-20 104.0 197 31.5
Sopen12g026780 Solanum pennellii HOM05D000004 ORTHO05D000002 4.8e-15 85.9 77 50.6
Psat7g136640 Pisum sativum HOM05D006984 ORTHO05D008773 3.5e-13 79.7 107 43.9
Psat6g152480 Pisum sativum HOM05D006984 ORTHO05D008773 6.1e-10 68.9 94 45.7
Psat6g152440 Pisum sativum HOM05D006984 ORTHO05D000789 1.4e-09 67.8 32 93.8
HPP92_015474 Vanilla planifolia HOM05D006984 ORTHO05D008773 9.8e-08 61.6 51 49.0


User provided reference genes

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