Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 3.5e-194 681.4 340 100.0
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 3.6e-178 628.2 340 92.6
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 3.0e-153 545.4 404 73.0
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 1.1e-150 537.0 339 81.1
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 1.6e-133 479.9 321 75.1
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 2.7e-133 479.2 333 73.0
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 6.0e-133 478.0 326 74.2
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 3.0e-132 475.7 328 73.2
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 5.0e-132 474.9 326 73.0
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 5.0e-132 474.9 308 77.3
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 1.1e-131 473.8 328 72.3
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 3.3e-131 472.2 323 73.7
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 3.3e-131 472.2 333 71.5
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 5.6e-131 471.5 329 71.1
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 1.2e-130 470.3 344 70.6
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 3.6e-130 468.8 335 69.9
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 3.6e-130 468.8 324 74.1
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 8.0e-130 467.6 327 70.9
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 4.0e-129 465.3 332 68.4
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 4.0e-129 465.3 311 74.9
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 4.0e-129 465.3 306 75.5
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 6.8e-129 464.5 326 69.9
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 6.8e-129 464.5 329 69.9
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.9e-129 464.2 338 70.1
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 8.9e-129 464.2 314 74.8
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 1.2e-128 463.8 326 71.8
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 1.5e-128 463.4 329 69.9
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 2.0e-128 463.0 336 70.2
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 2.6e-128 462.6 329 70.2
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 4.4e-128 461.8 331 69.2
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 5.8e-128 461.5 337 70.0
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 7.5e-128 461.1 326 69.3
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 1.7e-127 459.9 312 75.0
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 1.7e-127 459.9 325 70.2
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 1.7e-127 459.9 327 70.6
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 2.2e-127 459.5 330 71.8
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 2.9e-127 459.1 330 70.6
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 3.7e-127 458.8 328 69.5
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 4.9e-127 458.4 329 69.0
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 6.4e-127 458.0 324 71.9
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 8.3e-127 457.6 326 69.9
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 1.1e-126 457.2 305 75.4
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 1.4e-126 456.8 312 74.7
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 1.9e-126 456.4 323 70.6
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 3.2e-126 455.7 329 71.1
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 5.4e-126 454.9 310 73.2
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 7.1e-126 454.5 315 71.1
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 1.2e-125 453.8 337 68.8
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 1.6e-125 453.4 327 67.3
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 2.7e-125 452.6 307 72.0
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 3.5e-125 452.2 338 68.6
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 1.3e-124 450.3 329 70.5
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.7e-124 449.9 338 67.5
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 2.3e-124 449.5 310 71.0
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 2.3e-124 449.5 310 71.0
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 5.1e-124 448.4 335 68.1
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 6.6e-124 448.0 307 74.6
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 6.6e-124 448.0 336 69.6
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.5e-123 446.8 335 68.4
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.9e-123 446.4 321 71.7
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.9e-123 446.4 330 68.8
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 1.9e-123 446.4 328 69.8
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 2.5e-123 446.0 310 71.0
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 4.3e-123 445.3 330 68.5
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 9.5e-123 444.1 333 67.3
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.2e-122 443.7 307 73.3
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 1.1e-121 440.7 332 67.5
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 6.8e-121 438.0 293 74.4
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 6.8e-121 438.0 303 72.9
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 6.8e-121 438.0 318 70.8
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 1.2e-120 437.2 324 67.6
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 1.2e-120 437.2 340 67.1
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.0e-120 436.4 330 69.4
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 4.4e-120 435.3 310 69.0
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 5.8e-120 434.9 307 70.7
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 1.7e-119 433.3 322 68.3
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 1.9e-118 429.9 322 69.6
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 7.1e-118 427.9 345 65.5
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 3.5e-117 425.6 329 65.7
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 3.5e-117 425.6 302 70.2
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 3.5e-117 425.6 329 65.3
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 6.0e-117 424.9 329 66.6
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.7e-116 423.3 323 66.6
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 2.3e-116 422.9 309 69.6
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 1.5e-115 420.2 326 65.0
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 3.3e-115 419.1 323 65.9
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 3.1e-113 412.5 306 66.7
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 6.4e-111 404.8 334 59.6
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 4.2e-110 402.1 287 69.7
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 2.7e-109 399.4 332 63.3
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 9.6e-107 391.0 284 69.4
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 9.6e-107 391.0 284 69.4
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.2e-103 379.8 248 75.4
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.9e-102 376.7 332 60.2
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 2.8e-98 362.8 327 56.9
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 4.2e-94 349.0 251 70.5
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 2.1e-93 346.7 293 58.4
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 1.1e-89 334.3 300 56.0
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 2.4e-89 333.2 300 56.3
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 1.5e-88 330.5 299 56.9
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.4e-88 329.3 319 50.5
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 4.5e-88 328.9 301 52.5
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 5.8e-88 328.6 250 67.6
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 7.6e-88 328.2 302 53.0
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 3.8e-87 325.9 301 51.5
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 3.8e-87 325.9 302 52.3
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 3.8e-87 325.9 310 51.0
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.9e-87 325.5 302 50.7
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 1.4e-86 323.9 301 51.8
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 4.2e-86 322.4 312 51.3
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 5.5e-86 322.0 302 51.7
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 3.5e-85 319.3 245 68.2
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 7.9e-85 318.2 302 51.0
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.3e-84 317.4 302 52.3
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.3e-84 316.6 302 51.3
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.0e-84 316.2 302 50.3
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 3.9e-84 315.8 310 50.6
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 5.7e-83 312.0 302 52.0
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.7e-83 312.0 301 50.5
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 9.6e-83 311.2 307 49.8
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.3e-82 310.8 307 50.2
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.2e-82 308.5 300 50.0
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 1.4e-81 307.4 302 51.3
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 1.4e-81 307.4 302 51.3
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 1.4e-81 307.4 301 50.2
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.4e-81 306.6 317 48.3
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 3.1e-81 306.2 320 49.1
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 4.1e-81 305.8 308 49.7
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 6.9e-81 305.1 302 51.0
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.9e-81 305.1 317 48.3
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 9.0e-81 304.7 306 50.0
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.5e-80 303.9 300 49.7
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.0e-80 303.5 229 64.2
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 5.8e-80 302.0 303 49.8
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 1.7e-79 300.4 282 51.8
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 3.8e-79 299.3 308 48.7
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 5.0e-79 298.9 324 49.1
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 1.9e-78 297.0 305 49.5
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 6.7e-76 288.5 303 48.8
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 5.7e-75 285.4 304 45.4
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.3e-73 278.9 282 48.6
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 1.5e-72 277.3 292 47.6
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 3.6e-69 266.2 303 47.5
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 2.3e-68 263.5 289 47.8
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 2.2e-66 256.9 282 47.2
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 8.2e-66 255.0 356 39.0
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 1.4e-65 254.2 194 66.0
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 4.1e-65 252.7 243 51.4
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 2.7e-61 240.0 299 46.2
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.7e-53 213.4 220 48.2
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 8.0e-53 211.8 304 40.1
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 6.7e-52 208.8 192 60.9
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 8.8e-52 208.4 204 51.0
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 8.8e-52 208.4 204 51.0
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 3.3e-51 206.5 195 56.9
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 6.1e-45 185.7 325 36.9
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 5.0e-39 166.0 128 55.5
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 4.2e-38 162.9 128 54.7
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 4.2e-38 162.9 128 54.7
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.4e-33 147.9 301 32.6
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 4.1e-33 146.4 158 48.1
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 3.3e-30 136.7 111 52.3
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.2e-29 134.8 78 83.3
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 4.9e-26 122.9 159 44.7
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 1.7e-23 114.4 105 57.1
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 1.7e-18 97.8 308 27.6
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 5.0e-15 86.3 57 73.7


User provided reference genes

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