Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026355.2 Cucumis melo HOM05D002824 ORTHO05D007162 5.5e-26 120.2 59 100.0
MELO3C027652.2 Cucumis melo HOM05D002824 ORTHO05D007162 2.4e-21 104.8 58 89.7
PGR111G0083 Punica granatum HOM05D002824 ORTHO05D007162 1.7e-19 98.6 58 84.5
Gohir.A06G056900 Gossypium hirsutum HOM05D002824 ORTHO05D007162 2.2e-19 98.2 58 82.8
ClCG00G003160 Citrullus lanatus HOM05D002824 ORTHO05D007162 6.5e-19 96.7 54 88.9
Cpa.g.sc0.196 Carica papaya HOM05D002824 ORTHO05D007162 2.5e-18 94.7 58 82.8
Gorai.013G136400 Gossypium raimondii HOM05D002824 ORTHO05D007162 2.5e-18 94.7 58 82.8
Gohir.1Z050134 Gossypium hirsutum HOM05D002824 ORTHO05D007162 7.2e-18 93.2 58 81.0
ATCG00770 Arabidopsis thaliana HOM05D002824 ORTHO05D007162 1.6e-17 92.0 58 81.0
BNapus_Darmor_BZH_scaffold_253p00350 Brassica napus HOM05D002824 ORTHO05D007162 1.6e-17 92.0 58 81.0
C09p46990 Brassica napus HOM05D002824 ORTHO05D007162 1.6e-17 92.0 58 81.0
BolC7t41708H Brassica oleracea HOM05D002824 ORTHO05D007162 1.6e-17 92.0 58 81.0
BolC9t57548H Brassica oleracea HOM05D002824 ORTHO05D007162 1.6e-17 92.0 58 81.0
CARHR282250 Cardamine hirsuta HOM05D002824 ORTHO05D007162 2.1e-17 91.7 58 79.3
PSO548G0051 Papaver somniferum HOM05D002824 ORTHO05D007162 2.7e-17 91.3 58 77.6
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 2.7e-17 91.3 58 79.3
BolSC56t61248H Brassica oleracea HOM05D002824 ORTHO05D007162 3.6e-17 90.9 59 79.7
MELO3C033570.2 Cucumis melo HOM05D002824 ORTHO05D007162 3.6e-17 90.9 58 82.8
BNapus_Darmor_BZH_scaffold_287p00270 Brassica napus HOM05D002824 ORTHO05D007162 4.6e-17 90.5 58 79.3
BolSC29t60529H Brassica oleracea HOM05D002824 ORTHO05D007162 4.6e-17 90.5 58 79.3
BolSC29t60610H Brassica oleracea HOM05D002824 ORTHO05D007162 4.6e-17 90.5 58 79.3
BolSC35t60729H Brassica oleracea HOM05D002824 ORTHO05D007162 4.6e-17 90.5 58 79.3
BraA06t25384Z Brassica rapa HOM05D002824 ORTHO05D007162 4.6e-17 90.5 58 79.3
BraSC103t45445Z Brassica rapa HOM05D002824 ORTHO05D007162 4.6e-17 90.5 58 79.3
BraSC138t45553Z Brassica rapa HOM05D002824 ORTHO05D007162 4.6e-17 90.5 58 79.3
BraSC58t46441Z Brassica rapa HOM05D002824 ORTHO05D007162 4.6e-17 90.5 58 79.3
BraSC59t46570Z Brassica rapa HOM05D002824 ORTHO05D007162 4.6e-17 90.5 58 79.3
Gohir.D08G194656 Gossypium hirsutum HOM05D002824 ORTHO05D007162 4.6e-17 90.5 58 77.6
LjContig00318g0002732 Lotus japonicus HOM05D002824 ORTHO05D007162 4.6e-17 90.5 58 79.3
AL2G20560 Arabidopsis lyrata HOM05D002824 ORTHO05D007162 6.1e-17 90.1 58 79.3
AL2G21720 Arabidopsis lyrata HOM05D002824 ORTHO05D007162 6.1e-17 90.1 58 79.3
Gohir.A08G063166 Gossypium hirsutum HOM05D002824 ORTHO05D007162 6.1e-17 90.1 58 79.3
Thhalv10027382m.g Eutrema salsugineum HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 79.3
Lalb_Chr03g0039321 Lupinus albus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 79.3
Lalb_Chr25g0283371 Lupinus albus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 79.3
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
TAR375G0295 Trochodendron aralioides HOM05D002824 ORTHO05D007162 7.9e-17 89.7 58 77.6
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 1.0e-16 89.4 58 79.3
CAN.G327.20 Capsicum annuum HOM05D002824 ORTHO05D007162 1.4e-16 89.0 58 77.6
Gohir.A12G024800 Gossypium hirsutum HOM05D002824 ORTHO05D007162 1.4e-16 89.0 58 77.6
Nn021s41522 Nelumbo nucifera HOM05D002824 ORTHO05D007162 1.4e-16 89.0 58 77.6
RcHm_v2.0_CPg0501871 Rosa chinensis HOM05D002824 ORTHO05D007162 1.4e-16 89.0 58 77.6
CAN.G1595.2 Capsicum annuum HOM05D002824 ORTHO05D007162 1.8e-16 88.6 58 77.6
MBI05_g05353_MAGBIO Magnolia biondii HOM05D002824 ORTHO05D007162 1.8e-16 88.6 58 72.4
Solyc00g500031.1 Solanum lycopersicum HOM05D002824 ORTHO05D007162 1.8e-16 88.6 58 77.6
Solyc00g500076.1 Solanum lycopersicum HOM05D002824 ORTHO05D007162 1.8e-16 88.6 58 77.6
Lalb_Chr20g0114531 Lupinus albus HOM05D002824 ORTHO05D007162 2.3e-16 88.2 58 77.6
Gohir.D01G102138 Gossypium hirsutum HOM05D002824 ORTHO05D007162 3.9e-16 87.4 56 78.6
Phvul.001G158000 Phaseolus vulgaris HOM05D002824 ORTHO05D007162 5.1e-16 87.0 58 74.1
Gohir.D13G121750 Gossypium hirsutum HOM05D002824 ORTHO05D007162 6.7e-16 86.7 58 79.3
arahy.Tifrunner.gnm1.ann1.BAD1H7 Arachis hypogaea HOM05D002824 ORTHO05D007162 8.8e-16 86.3 56 78.6
DCAR_032521 Daucus carota HOM05D002824 ORTHO05D007162 8.8e-16 86.3 58 75.9
Migut.D01328 Erythranthe guttata HOM05D002824 ORTHO05D007162 8.8e-16 86.3 58 75.9
C02p60170 Brassica napus HOM05D002824 ORTHO05D007162 1.5e-15 85.5 58 75.9
HanXRQChr00c0394g0574541 Helianthus annuus HOM05D002824 ORTHO05D007162 1.5e-15 85.5 58 72.4
HanXRQChr00c0593g0576371 Helianthus annuus HOM05D002824 ORTHO05D007162 1.5e-15 85.5 58 72.4
HanXRQChr00c0925g0577901 Helianthus annuus HOM05D002824 ORTHO05D007162 1.5e-15 85.5 58 72.4
HanXRQChr01g0020211 Helianthus annuus HOM05D002824 ORTHO05D007162 1.5e-15 85.5 58 72.4
HanXRQChr04g0127481 Helianthus annuus HOM05D002824 ORTHO05D007162 1.5e-15 85.5 58 72.4
HanXRQChr10g0284391 Helianthus annuus HOM05D002824 ORTHO05D007162 1.5e-15 85.5 58 72.4
HanXRQChr10g0318051 Helianthus annuus HOM05D002824 ORTHO05D007162 1.5e-15 85.5 58 72.4
HanXRQChr11g0321101 Helianthus annuus HOM05D002824 ORTHO05D007162 1.5e-15 85.5 58 72.4
HanXRQChr11g0326971 Helianthus annuus HOM05D002824 ORTHO05D007162 1.5e-15 85.5 58 72.4
HanXRQChr12g0369861 Helianthus annuus HOM05D002824 ORTHO05D007162 1.5e-15 85.5 58 72.4
HanXRQCPg0580191 Helianthus annuus HOM05D002824 ORTHO05D007162 1.5e-15 85.5 58 72.4
BolSC49t61163H Brassica oleracea HOM05D002824 ORTHO05D007162 2.5e-15 84.7 53 81.1
BolSC35t60670H Brassica oleracea HOM05D002824 ORTHO05D007162 3.3e-15 84.3 59 74.6
LjContig00319g0012184 Lotus japonicus HOM05D000964 ORTHO05D004047 3.3e-15 84.3 55 78.2
LjContig00319g0026138 Lotus japonicus HOM05D000964 ORTHO05D004047 3.3e-15 84.3 55 78.2
Lsat_1_v5_gn_1_116300 Lactuca sativa HOM05D002824 ORTHO05D007162 5.7e-15 83.6 58 70.7
Lalb_Chr23g0274241 Lupinus albus HOM05D002824 ORTHO05D007162 9.7e-15 82.8 58 72.4
Nitab4.5_0000173g0100 Nicotiana tabacum HOM05D000964 ORTHO05D001488 1.7e-14 82.0 55 76.4
FAN18G2960 Fragaria x ananassa HOM05D015635 ORTHO05D007162 2.2e-14 81.6 56 73.2
GSVIVG01014320001 Vitis vinifera HOM05D002824 ORTHO05D007162 2.2e-14 81.6 58 72.4
Gorai.003G111500 Gossypium raimondii HOM05D002824 ORTHO05D007162 4.8e-14 80.5 56 73.2
Gohir.D03G105400 Gossypium hirsutum HOM05D002824 ORTHO05D007162 6.3e-14 80.1 56 73.2
BraSC58t46502Z Brassica rapa HOM05D002824 ORTHO05D007162 8.2e-14 79.7 50 80.0
HanXRQChr17g0554561 Helianthus annuus HOM05D002824 ORTHO05D007162 1.1e-13 79.3 58 67.2
Medtr4g034810 Medicago truncatula HOM05D002824 ORTHO05D007162 5.3e-13 77.0 50 76.0
BraSC103t45484Z Brassica rapa HOM05D002824 ORTHO05D007162 9.1e-13 76.3 59 69.5
SGA_v2.0_scaffold208G41997 Striga asiatica HOM05D002824 ORTHO05D007162 5.9e-12 73.6 50 74.0
Gohir.D08G062280 Gossypium hirsutum HOM05D002824 ORTHO05D007162 7.7e-12 73.2 43 86.0
SEGI_33981 Sequoiadendron giganteum HOM05D002824 ORTHO05D007162 5.0e-11 70.5 58 58.6
ClCG10G008280 Citrullus lanatus HOM05D002824 ORTHO05D007162 2.5e-10 68.2 40 85.0
SEGI_01834 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 4.2e-10 67.4 56 57.1
SEGI_02369 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.2e-10 67.4 56 57.1
SEGI_04931 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.2e-10 67.4 56 57.1
SEGI_09600 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 4.2e-10 67.4 56 57.1
SEGI_17120 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.2e-10 67.4 56 57.1
SEGI_22757 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.2e-10 67.4 56 57.1
SEGI_27642 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 4.2e-10 67.4 56 57.1
Eucgr.E03558 Eucalyptus grandis HOM05D002824 ORTHO05D007162 7.2e-10 66.6 58 60.3
SEGI_30352 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 1.2e-09 65.9 56 55.4
arahy.Tifrunner.gnm1.ann1.CYZ3KW Arachis hypogaea HOM05D001828 ORTHO05D001745 1.6e-09 65.5 42 78.6
Nitab4.5_0020737g0030 Nicotiana tabacum HOM05D002824 ORTHO05D007162 7.9e-09 63.2 41 78.0
Gohir.D11G307000 Gossypium hirsutum HOM05D002824 ORTHO05D007162 1.0e-08 62.8 41 75.6
BraSC143t45637Z Brassica rapa HOM05D002824 ORTHO05D007162 2.3e-08 61.6 37 83.8
HanXRQChr11g0345281 Helianthus annuus HOM05D002824 ORTHO05D007162 3.0e-08 61.2 41 70.7
Gohir.A05G396400 Gossypium hirsutum HOM05D002824 ORTHO05D007162 1.1e-07 59.3 38 76.3
Nitab4.5_0011882g0040 Nicotiana tabacum HOM05D002824 ORTHO05D007162 1.5e-07 58.9 39 74.4
Hund15214 Selenicereus undatus HOM05D002824 ORTHO05D007162 9.7e-07 56.2 57 54.4
Gorai.005G065900 Gossypium raimondii HOM05D002824 ORTHO05D007162 2.2e-06 55.1 38 73.7
Medtr4g059910 Medicago truncatula HOM05D002824 ORTHO05D007162 8.2e-06 53.1 66 50.0


User provided reference genes

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