Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 3.8e-125 451.4 219 100.0
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 9.5e-124 446.8 219 98.6
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 1.4e-119 433.0 219 95.4
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 5.6e-116 421.0 219 91.8
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 1.1e-95 353.6 216 74.5
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 3.0e-93 345.5 216 75.5
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 3.9e-93 345.1 214 76.2
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 3.9e-93 345.1 216 75.0
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 8.6e-93 344.0 216 75.0
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 3.3e-92 342.0 219 73.5
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 4.3e-92 341.7 205 75.6
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 1.2e-91 340.1 219 71.7
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 1.2e-91 340.1 216 73.1
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 6.2e-91 337.8 216 74.1
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 8.1e-91 337.4 219 72.1
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.1e-90 337.0 220 72.3
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.1e-90 337.0 210 74.3
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.1e-90 337.0 219 74.0
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 1.1e-90 337.0 219 74.0
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 1.1e-90 337.0 214 73.8
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 1.4e-90 336.7 219 72.6
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 1.4e-90 336.7 205 75.1
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 2.4e-90 335.9 219 73.1
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 3.1e-90 335.5 210 73.3
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 3.1e-90 335.5 210 72.9
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 3.1e-90 335.5 206 75.7
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 4.0e-90 335.1 205 75.1
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 4.0e-90 335.1 214 73.8
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 6.8e-90 334.3 215 73.5
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 6.8e-90 334.3 219 71.2
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 6.8e-90 334.3 219 72.1
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 1.5e-89 333.2 210 73.3
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.0e-89 332.8 210 72.4
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 4.4e-89 331.6 219 72.6
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 5.8e-89 331.3 210 75.2
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 7.6e-89 330.9 210 72.9
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 2.2e-88 329.3 220 71.8
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 2.2e-88 329.3 214 70.6
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 2.9e-88 328.9 213 72.3
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 2.9e-88 328.9 206 74.3
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 3.8e-88 328.6 205 73.2
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 6.4e-88 327.8 212 71.7
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 8.4e-88 327.4 216 70.8
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 1.4e-87 326.6 216 70.4
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 4.2e-87 325.1 208 71.6
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 7.1e-87 324.3 217 71.4
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 9.3e-87 323.9 217 68.2
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 9.3e-87 323.9 210 71.9
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 1.6e-86 323.2 208 70.2
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 3.5e-86 322.0 208 71.2
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 3.5e-86 322.0 208 73.1
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 3.5e-86 322.0 208 70.2
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 6.0e-86 321.2 211 69.7
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 1.3e-85 320.1 216 69.4
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 1.3e-85 320.1 208 69.7
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 2.3e-85 319.3 219 69.9
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 8.7e-85 317.4 212 69.8
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 1.1e-84 317.0 219 69.4
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 1.5e-84 316.6 219 69.4
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 1.5e-84 316.6 219 69.9
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 1.9e-84 316.2 208 69.7
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 2.5e-84 315.8 210 69.5
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 3.3e-84 315.5 210 70.5
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 5.6e-84 314.7 208 69.2
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 5.6e-84 314.7 216 68.1
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 7.3e-84 314.3 210 70.0
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 7.3e-84 314.3 219 69.4
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 7.3e-84 314.3 219 69.4
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 7.3e-84 314.3 218 66.1
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 9.6e-84 313.9 211 68.2
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 1.3e-83 313.5 219 68.5
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 1.6e-83 313.2 205 70.7
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 2.1e-83 312.8 216 67.1
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 2.8e-83 312.4 221 67.4
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 4.8e-83 311.6 221 67.4
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 1.1e-82 310.5 210 72.4
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 1.8e-82 309.7 209 69.9
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 2.4e-82 309.3 216 68.5
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 3.1e-82 308.9 217 65.0
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 3.1e-82 308.9 214 67.8
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 3.1e-82 308.9 210 70.0
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 4.0e-82 308.5 219 67.1
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 2.0e-81 306.2 222 68.9
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 2.6e-81 305.8 205 70.7
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.3e-80 303.5 246 62.6
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 2.2e-80 302.8 210 70.0
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.8e-80 302.0 229 63.3
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 6.4e-80 301.2 216 66.2
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 8.4e-80 300.8 216 67.1
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 8.4e-80 300.8 216 66.2
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 2.1e-78 296.2 211 66.4
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 8.7e-77 290.8 208 64.9
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 2.5e-76 289.3 190 68.4
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.3e-75 287.0 209 65.1
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 8.1e-75 284.3 208 64.4
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 6.9e-74 281.2 208 63.0
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 7.6e-73 277.7 195 66.7
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 2.9e-72 275.8 209 59.3
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 4.9e-72 275.0 214 64.0
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 3.2e-71 272.3 194 67.5
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 1.2e-70 270.4 213 58.7
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.3e-69 266.9 197 66.0
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 3.9e-69 265.4 195 64.6
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 1.9e-68 263.1 173 71.1
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 6.2e-67 258.1 195 64.1
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 4.0e-66 255.4 210 55.7
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 9.0e-66 254.2 199 60.8
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 4.5e-65 251.9 204 56.9
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.2e-63 245.7 166 69.9
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 3.5e-62 242.3 208 54.8
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 6.7e-61 238.0 212 55.7
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 4.3e-60 235.3 146 73.3
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.1e-59 233.0 189 62.4
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 6.3e-59 231.5 212 53.8
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 1.2e-57 227.3 207 48.8
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 2.6e-57 226.1 145 69.7
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.0e-56 224.2 213 53.1
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 8.5e-56 221.1 135 74.8
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 7.9e-54 214.5 242 50.4
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 2.3e-53 213.0 193 51.8
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 1.3e-51 207.2 141 69.5
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 3.4e-49 199.1 209 47.4
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 5.9e-49 198.4 126 72.2
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 2.3e-45 186.4 199 51.3
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 6.7e-45 184.9 166 54.2
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.0e-44 183.3 207 47.8
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 9.7e-44 181.0 163 52.8
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 5.2e-37 158.7 111 67.6
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 5.3e-34 148.7 110 64.5
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 3.7e-27 125.9 83 63.9
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.3e-24 117.5 71 77.5
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 1.3e-24 117.5 212 36.3
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 2.9e-24 116.3 236 33.1
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 2.5e-23 113.2 208 33.7
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.0e-21 107.8 138 44.2
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 4.0e-21 105.9 75 69.3
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 1.3e-19 100.9 117 47.9
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 1.3e-19 100.9 117 47.9
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 3.7e-19 99.4 210 31.9
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 4.8e-19 99.0 66 69.7
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 8.3e-19 98.2 117 46.2
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 1.0e-16 91.3 199 28.1
Cfa022693 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.9e-15 87.0 216 29.2
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 4.2e-15 85.9 180 31.1
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.4e-13 80.9 110 41.8
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.8e-13 80.5 201 28.9
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 6.8e-13 78.6 44 72.7
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 4.9e-11 72.4 42 73.8
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 4.1e-10 69.3 109 39.4
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 2.0e-09 67.0 47 63.8
Cre10.g464500 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 2.0e-09 67.0 220 24.1
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 7.3e-07 58.5 40 62.5
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 9.5e-07 58.2 81 43.2
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 3.6e-06 56.2 79 43.0


User provided reference genes

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