Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 1.7e-267 925.6 524 100.0
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 1.6e-249 865.9 525 94.5
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 2.0e-244 849.0 525 89.7
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 1.0e-208 730.3 536 77.6
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 2.3e-139 500.0 373 78.8
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 4.9e-134 482.3 511 58.5
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 5.6e-130 468.8 481 59.3
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.6e-129 467.2 489 58.9
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 2.8e-129 466.5 486 57.6
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 8.0e-129 464.9 530 56.4
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.1e-128 464.5 481 57.8
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.5e-127 460.7 481 58.4
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 2.0e-127 460.3 535 54.2
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.0e-127 460.3 481 58.4
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 3.7e-126 456.1 543 55.2
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 2.4e-125 453.4 533 55.2
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 1.2e-124 451.1 530 54.3
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 6.0e-124 448.7 533 53.7
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 1.7e-123 447.2 541 54.0
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 2.5e-122 443.4 540 53.5
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 3.6e-121 439.5 534 54.3
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.1e-120 438.0 557 51.9
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.1e-120 438.0 535 53.6
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 5.2e-120 435.6 533 53.8
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 6.8e-120 435.3 535 56.6
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 1.5e-119 434.1 533 55.2
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 2.0e-119 433.7 540 52.4
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.0e-119 433.7 530 53.8
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.8e-119 432.2 526 53.6
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.7e-118 430.6 533 53.3
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 2.4e-117 426.8 490 55.9
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 3.5e-116 422.9 526 52.1
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 1.5e-114 417.5 517 57.4
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.9e-114 417.2 559 51.3
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 3.3e-114 416.4 529 53.3
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.3e-114 416.0 526 51.1
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 7.3e-114 415.2 535 50.7
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 9.5e-114 414.8 559 49.9
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 1.2e-113 414.5 534 51.9
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.2e-113 414.5 531 54.2
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 3.6e-113 412.9 510 52.5
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 2.4e-112 410.2 516 53.9
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.0e-112 409.5 482 54.6
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 4.0e-112 409.5 534 51.1
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 4.0e-112 409.5 487 54.0
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 4.0e-112 409.5 529 52.6
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 6.8e-112 408.7 529 52.4
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 1.2e-111 407.9 526 53.4
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 3.4e-111 406.4 532 50.4
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 2.2e-110 403.7 510 50.0
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 8.4e-110 401.7 539 49.9
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.4e-109 401.0 536 49.6
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 3.2e-109 399.8 530 50.0
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 4.1e-109 399.4 518 49.6
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 1.2e-108 397.9 491 54.6
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.7e-108 396.7 530 49.8
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 1.0e-107 394.8 534 48.7
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 1.0e-107 394.8 620 46.3
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 2.3e-107 393.7 547 49.7
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 1.5e-106 391.0 509 50.7
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 3.3e-106 389.8 516 48.6
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 1.6e-105 387.5 524 46.4
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 6.2e-105 385.6 520 47.5
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 6.2e-105 385.6 527 50.3
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 6.9e-104 382.1 490 49.4
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 2.6e-103 380.2 500 50.0
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 3.4e-103 379.8 537 49.0
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 1.3e-102 377.9 477 52.0
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 1.7e-102 377.5 523 48.0
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 8.4e-102 375.2 513 45.6
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 2.4e-101 373.6 535 47.1
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 4.2e-101 372.9 531 48.4
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 9.3e-101 371.7 524 51.1
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 9.3e-101 371.7 532 48.3
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 8.7e-99 365.2 524 46.9
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 4.3e-98 362.8 493 49.9
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 4.3e-98 362.8 529 48.6
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 1.6e-97 360.9 540 45.2
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 2.8e-97 360.1 537 46.2
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 2.8e-97 360.1 494 50.2
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 1.4e-96 357.8 513 47.8
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 3.1e-96 356.7 503 47.3
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 6.9e-96 355.5 503 46.1
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 2.0e-95 354.0 491 49.1
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 2.0e-95 354.0 554 47.5
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 7.6e-95 352.1 536 47.0
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 7.6e-95 352.1 554 44.0
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 7.6e-95 352.1 529 47.6
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 9.9e-95 351.7 533 45.2
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 1.7e-94 350.9 510 45.3
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 2.2e-94 350.5 526 46.4
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 8.4e-94 348.6 527 44.2
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 2.4e-93 347.1 525 44.8
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.4e-93 345.9 531 46.1
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 1.2e-92 344.7 531 46.9
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 2.7e-92 343.6 539 44.9
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 4.6e-92 342.8 511 45.2
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 1.8e-91 340.9 479 44.5
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 2.3e-91 340.5 475 45.1
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 2.3e-91 340.5 529 43.9
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 3.0e-91 340.1 481 44.7
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 3.9e-91 339.7 531 43.7
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 3.3e-90 336.7 529 43.7
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 7.4e-90 335.5 522 43.9
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 4.8e-89 332.8 515 43.3
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 4.0e-88 329.7 518 43.1
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 5.3e-88 329.3 476 44.7
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 5.3e-88 329.3 529 42.9
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 1.2e-87 328.2 518 42.9
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 2.0e-87 327.4 421 55.1
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 5.8e-87 325.9 433 56.6
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 5.8e-87 325.9 489 43.8
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 9.9e-87 325.1 518 42.7
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 2.2e-86 323.9 554 43.3
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 4.9e-86 322.8 554 43.9
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 4.2e-85 319.7 387 53.7
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 7.1e-85 318.9 563 46.4
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 1.8e-83 314.3 508 45.5
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 3.9e-83 313.2 531 42.6
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 1.9e-82 310.8 540 45.4
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 5.6e-82 309.3 541 41.6
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.6e-81 307.8 522 42.0
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 6.9e-80 302.4 525 44.0
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 2.2e-78 297.4 499 42.3
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 4.2e-77 293.1 381 47.5
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 9.3e-77 292.0 526 40.1
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 1.2e-76 291.6 559 39.9
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.8e-75 287.7 528 40.7
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 1.1e-74 285.0 505 39.0
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 9.0e-72 275.4 374 50.3
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.4e-69 268.1 512 40.6
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 2.3e-67 260.8 525 37.9
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 9.1e-64 248.8 609 35.6
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 1.9e-61 241.1 316 55.7
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 3.2e-61 240.4 406 44.3
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 3.0e-59 233.8 449 37.2
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 9.7e-58 228.8 280 52.1
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 6.5e-54 216.1 249 57.4
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 2.5e-53 214.2 231 55.4
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 1.3e-49 201.8 408 35.8
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 1.7e-49 201.4 410 35.6
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 6.5e-46 189.5 399 36.6
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.8e-41 174.1 410 32.7
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 4.5e-39 166.8 174 55.7
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 1.0e-38 165.6 435 32.4
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.3e-38 165.2 407 32.7
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.5e-37 161.8 406 32.8
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 5.5e-37 159.8 470 31.5
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 5.7e-34 149.8 452 31.0
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 1.3e-33 148.7 332 36.4
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.8e-33 146.7 270 39.3
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 7.7e-31 139.4 164 53.0
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 1.3e-30 138.7 188 43.1
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 3.8e-30 137.1 516 30.6
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 2.8e-28 131.0 171 46.8
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 1.0e-27 129.0 236 39.8
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.4e-27 128.6 158 44.9
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 8.9e-27 125.9 487 29.0
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 7.5e-26 122.9 146 45.2
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 2.8e-25 120.9 187 41.2
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 1.2e-23 115.5 489 27.8
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 3.5e-23 114.0 234 37.6
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 5.8e-18 96.7 80 56.2
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 3.7e-17 94.0 125 47.2
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 6.4e-17 93.2 70 61.4
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 4.0e-11 73.9 71 56.3
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 4.0e-11 73.9 81 48.1
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 5.8e-10 70.1 50 60.0
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 7.5e-10 69.7 67 52.2
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 1.3e-09 68.9 141 39.7
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 8.3e-09 66.2 158 36.1
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 2.4e-08 64.7 118 37.3
AagrBONN_evm.TU.Sc2ySwM_117.2262 Anthoceros agrestis HOM05D003929 ORTHO05D004499 3.0e-06 57.8 48 54.2
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 3.0e-06 57.8 44 65.9
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 5.1e-06 57.0 516 29.1
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 8.6e-06 56.2 105 36.2


User provided reference genes

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