Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 6.5e-166 587.4 316 100.0
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 2.1e-156 555.8 316 95.3
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 1.9e-141 506.1 316 87.7
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 7.2e-125 451.1 315 78.1
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 1.0e-86 324.3 339 56.6
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 9.6e-85 317.8 315 57.1
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 9.9e-82 307.8 318 56.3
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 1.2e-79 300.8 319 55.8
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 2.3e-78 296.6 305 55.7
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 1.5e-77 293.9 314 55.4
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 6.2e-76 288.5 318 53.1
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 1.1e-75 287.7 309 54.7
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 4.0e-75 285.8 346 48.8
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 1.2e-74 284.3 308 54.2
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 5.8e-74 282.0 352 49.4
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 2.2e-73 280.0 320 51.9
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 6.4e-73 278.5 338 51.2
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 8.4e-73 278.1 277 57.0
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 7.1e-72 275.0 319 52.0
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 2.7e-71 273.1 319 51.4
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 3.5e-71 272.7 308 52.3
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 3.5e-71 272.7 321 52.3
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.0e-70 271.2 329 52.3
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.3e-70 270.8 309 48.9
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.8e-70 270.4 308 51.6
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 2.3e-70 270.0 297 52.9
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 3.0e-70 269.6 308 51.3
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 3.0e-70 269.6 321 51.1
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 8.7e-70 268.1 337 49.3
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 1.1e-69 267.7 300 50.0
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 3.3e-69 266.2 296 50.3
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 4.3e-69 265.8 345 47.5
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 9.6e-69 264.6 309 48.2
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 1.3e-68 264.2 272 55.5
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.6e-68 263.8 316 50.0
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 2.1e-68 263.5 299 51.5
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 3.7e-68 262.7 314 51.6
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 1.1e-67 261.2 306 53.6
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.4e-67 260.8 316 48.4
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 1.8e-67 260.4 314 51.0
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 3.1e-67 259.6 315 49.8
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 3.1e-67 259.6 272 54.0
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 6.9e-67 258.5 309 48.5
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 1.2e-66 257.7 321 47.4
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.2e-66 257.7 265 57.7
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 2.0e-66 256.9 298 49.3
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.6e-66 256.5 296 52.7
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 3.4e-66 256.1 321 47.4
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.0e-65 254.6 296 53.4
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 1.3e-65 254.2 302 51.3
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 2.2e-65 253.4 303 47.9
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 3.8e-65 252.7 272 54.0
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 4.9e-65 252.3 307 47.6
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 1.1e-64 251.1 320 49.1
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 1.1e-64 251.1 313 49.8
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.5e-64 250.0 272 52.9
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 3.2e-64 249.6 332 46.4
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 4.2e-64 249.2 313 45.4
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 5.5e-64 248.8 304 49.7
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 1.6e-63 247.3 309 48.9
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.1e-63 246.9 316 48.7
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 2.7e-63 246.5 310 48.1
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 4.6e-63 245.7 335 47.8
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 6.0e-63 245.4 308 46.8
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 3.0e-62 243.0 315 46.7
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 3.0e-62 243.0 290 49.3
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 3.3e-61 239.6 310 47.7
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 4.3e-61 239.2 266 50.8
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 5.7e-61 238.8 301 48.8
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 9.6e-61 238.0 314 46.8
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 1.6e-60 237.3 314 46.2
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 2.1e-60 236.9 300 47.0
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 2.1e-60 236.9 321 45.8
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 2.8e-60 236.5 312 48.1
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 6.2e-60 235.3 339 41.6
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 6.2e-60 235.3 284 49.3
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.1e-59 234.6 243 51.0
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 1.8e-59 233.8 300 48.7
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 3.1e-59 233.0 319 48.3
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 1.5e-58 230.7 316 46.2
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 1.7e-57 227.3 313 46.3
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 1.7e-57 227.3 320 44.1
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 6.5e-57 225.3 299 45.8
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 1.4e-56 224.2 316 45.6
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 1.4e-56 224.2 308 44.5
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 1.4e-56 224.2 294 44.9
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 3.2e-56 223.0 301 45.8
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 4.2e-56 222.6 235 49.8
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 5.5e-56 222.2 304 45.7
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 2.1e-55 220.3 310 44.2
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 2.1e-55 220.3 358 42.5
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 2.3e-54 216.9 366 41.0
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 3.0e-54 216.5 349 41.8
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 3.9e-54 216.1 311 44.4
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 3.9e-54 216.1 245 53.5
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 1.9e-53 213.8 312 43.9
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 3.3e-53 213.0 279 47.0
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.6e-52 210.7 297 45.5
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 2.2e-52 210.3 311 43.1
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 2.8e-52 209.9 313 43.5
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 1.4e-51 207.6 309 42.4
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 1.8e-51 207.2 318 43.4
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 4.1e-51 206.1 311 42.4
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 4.1e-51 206.1 309 43.0
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 5.3e-51 205.7 309 43.0
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 5.3e-51 205.7 312 42.9
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 5.3e-51 205.7 317 41.3
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 6.9e-51 205.3 312 42.6
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 1.2e-50 204.5 310 41.9
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 1.3e-49 201.1 234 51.3
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 3.8e-49 199.5 315 41.9
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 4.2e-48 196.1 314 40.4
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.6e-47 194.1 266 44.7
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 1.6e-47 194.1 305 42.0
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 2.1e-47 193.7 310 41.9
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 3.6e-47 193.0 310 41.6
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.0e-46 191.4 254 44.5
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 3.0e-46 189.9 296 44.9
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 2.2e-44 183.7 238 47.1
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 6.3e-44 182.2 237 46.8
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 8.2e-44 181.8 188 50.5
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 1.2e-39 167.9 182 51.1
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 1.6e-39 167.5 309 38.2
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 1.0e-38 164.9 195 51.3
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 1.5e-37 161.0 292 35.3
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 5.7e-37 159.1 286 37.8
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 2.8e-36 156.8 253 41.5
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 8.2e-36 155.2 137 56.2
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 7.0e-35 152.1 248 39.9
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 3.2e-32 143.3 293 36.2
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 7.2e-32 142.1 311 36.3
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 3.0e-30 136.7 225 42.2
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 3.0e-30 136.7 223 39.0
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 1.8e-27 127.5 251 34.3
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 2.4e-27 127.1 144 47.2
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 2.0e-26 124.0 150 50.0
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 6.1e-23 112.5 268 32.5
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 3.4e-21 106.7 188 37.8
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 3.4e-21 106.7 133 43.6
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 3.7e-20 103.2 238 32.8
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 5.4e-19 99.4 225 33.8
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 3.5e-18 96.7 195 36.9
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 1.5e-16 91.3 186 34.4
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 1.6e-15 87.8 206 29.1
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 2.6e-13 80.5 73 54.8
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 1.1e-11 75.1 83 47.0
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 4.1e-11 73.2 98 50.0
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 7.7e-10 68.9 111 36.0
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.1e-08 65.1 200 26.5
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 4.2e-08 63.2 149 25.5
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 2.8e-07 60.5 100 40.0
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 2.3e-06 57.4 180 28.3


User provided reference genes

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