Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026242.2 Cucumis melo HOM05D007328 ORTHO05D009246 2.5e-53 211.8 107 100.0
CsaV3_1G000900 Cucumis sativus L. HOM05D007328 ORTHO05D009246 2.3e-46 188.7 108 93.5
ClCG06G017550 Citrullus lanatus HOM05D007328 ORTHO05D009246 6.8e-43 177.2 107 88.8
Sed0026647 Sechium edule HOM05D007328 ORTHO05D009246 1.1e-37 159.8 107 82.2
Haze_07631 Corylus avellana HOM05D007328 ORTHO05D009246 3.8e-33 144.8 106 71.7
CANSAT80G1532 Cannabis sativa HOM05D007328 ORTHO05D009246 5.4e-32 141.0 107 70.1
Prupe.5G161600 Prunus persica HOM05D007328 ORTHO05D009246 7.1e-32 140.6 108 72.2
GSVIVG01007592001 Vitis vinifera HOM05D007328 ORTHO05D009246 4.6e-31 137.9 104 71.2
FAN18G0524 Fragaria x ananassa HOM05D007328 ORTHO05D009246 1.7e-30 136.0 106 69.8
QL10p005926 Quercus lobata HOM05D007328 ORTHO05D009246 1.7e-30 136.0 105 69.5
Sc04g0001180 Simmondsia chinensis HOM05D007328 ORTHO05D009246 2.3e-30 135.6 105 70.5
CSS0000986 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 3.0e-30 135.2 107 68.2
Dinv38499 Davidia involucrata HOM05D007328 ORTHO05D009246 5.1e-30 134.4 102 70.6
FvH4_5g06690 Fragaria vesca HOM05D007328 ORTHO05D009246 6.6e-30 134.0 106 68.9
CiPaw.12G033600 Carya illinoinensis HOM05D007328 ORTHO05D009246 1.5e-29 132.9 102 68.6
Ciclev10022963m.g Citrus clementina HOM05D007328 ORTHO05D009246 1.5e-29 132.9 109 67.9
Rhsim12G0170200 Rhododendron simsii HOM05D007328 ORTHO05D009246 1.6e-28 129.4 107 67.3
TAR629G2292 Trochodendron aralioides HOM05D007328 ORTHO05D009246 1.6e-28 129.4 105 69.5
Duzib205G1420 Durio zibethinus HOM05D007328 ORTHO05D009246 2.1e-28 129.0 104 71.2
FAN04G3262 Fragaria x ananassa HOM05D007328 ORTHO05D009246 2.1e-28 129.0 106 67.0
RcHm_v2.0_Chr7g0191941 Rosa chinensis HOM05D007328 ORTHO05D009246 2.1e-28 129.0 102 71.6
FAN13G1360 Fragaria x ananassa HOM05D007328 ORTHO05D009246 2.8e-28 128.6 106 66.0
PSO063G4259 Papaver somniferum HOM05D007328 ORTHO05D009246 8.1e-28 127.1 99 68.7
Potri.012G090600 Populus trichocarpa HOM05D007328 ORTHO05D009246 1.4e-27 126.3 107 66.4
PSO067G0004 Papaver somniferum HOM05D007328 ORTHO05D009246 1.8e-27 125.9 106 63.2
TWI23G0848 Tripterygium wilfordii HOM05D007328 ORTHO05D009246 4.0e-27 124.8 107 64.5
Aqoxy5G03651 Aquilegia oxysepala HOM05D007328 ORTHO05D009246 5.3e-27 124.4 102 63.7
PGR044G2544 Punica granatum HOM05D007328 ORTHO05D009246 6.9e-27 124.0 106 67.0
CAN.G126.95 Capsicum annuum HOM05D007328 ORTHO05D009246 9.0e-27 123.6 106 65.1
Nitab4.5_0003542g0010 Nicotiana tabacum HOM05D007328 ORTHO05D009246 1.2e-26 123.2 106 65.1
Nitab4.5_0000510g0070 Nicotiana tabacum HOM05D007328 ORTHO05D009246 1.5e-26 122.9 106 65.1
Hma1.2p1_2431F.1_g322030 Hydrangea macrophylla HOM05D007328 ORTHO05D009246 2.0e-26 122.5 101 65.3
THA.LOC104809276 Tarenaya hassleriana HOM05D007328 ORTHO05D009246 9.9e-26 120.2 107 63.6
Gohir.D12G189600 Gossypium hirsutum HOM05D007328 ORTHO05D009246 1.3e-25 119.8 106 62.3
Solyc03g111790.4 Solanum lycopersicum HOM05D007328 ORTHO05D009246 1.3e-25 119.8 106 63.2
Sopen03g030890 Solanum pennellii HOM05D007328 ORTHO05D009246 1.3e-25 119.8 106 63.2
Ah.08g218420 Amaranthus hybridus HOM05D007328 ORTHO05D009246 2.9e-25 118.6 108 64.8
DCAR_007459 Daucus carota HOM05D007328 ORTHO05D009246 3.8e-25 118.2 102 64.7
Gohir.A12G186600 Gossypium hirsutum HOM05D007328 ORTHO05D009246 3.8e-25 118.2 102 63.7
Gorai.008G203400 Gossypium raimondii HOM05D007328 ORTHO05D009246 3.8e-25 118.2 106 61.3
PGSC0003DMG400015227 Solanum tuberosum HOM05D007328 ORTHO05D009246 3.8e-25 118.2 106 62.3
Glyma.05G043400 Glycine max HOM05D007328 ORTHO05D009246 4.9e-25 117.9 107 64.5
COL.COLO4_19806 Corchorus olitorius HOM05D007328 ORTHO05D009246 8.4e-25 117.1 112 65.2
MSTRG.4340 Avicennia marina HOM05D007328 ORTHO05D009246 1.1e-24 116.7 107 60.7
arahy.Tifrunner.gnm1.ann1.RLPB8M Arachis hypogaea HOM05D007328 ORTHO05D009246 1.4e-24 116.3 107 62.6
Hund05612 Selenicereus undatus HOM05D007328 ORTHO05D009246 1.4e-24 116.3 109 62.4
SGA_v2.0_scaffold7G04170 Striga asiatica HOM05D007328 ORTHO05D009246 1.4e-24 116.3 107 61.7
Thecc.03G118600 Theobroma cacao HOM05D007328 ORTHO05D009246 1.9e-24 115.9 102 66.7
Cc04_g10870 Coffea canephora HOM05D007328 ORTHO05D009246 4.2e-24 114.8 105 63.8
Glyma.17G125900 Glycine max HOM05D007328 ORTHO05D009246 4.2e-24 114.8 107 62.6
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 5.4e-24 114.4 102 65.7
Sp5g33820 Schrenkiella parvula HOM05D007328 ORTHO05D009246 5.4e-24 114.4 102 65.7
ECA246G4123 Erigeron canadensis HOM05D007328 ORTHO05D009246 7.1e-24 114.0 105 59.0
FAN08G2248 Fragaria x ananassa HOM05D007328 ORTHO05D009246 7.1e-24 114.0 123 56.9
Lsat_1_v5_gn_5_12821 Lactuca sativa HOM05D007328 ORTHO05D009246 9.3e-24 113.6 105 59.0
BcaC08g47455 Brassica carinata HOM05D007328 ORTHO05D009246 1.6e-23 112.8 102 64.7
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 1.6e-23 112.8 102 64.7
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 1.6e-23 112.8 102 64.7
BraA07t31907Z Brassica rapa HOM05D007328 ORTHO05D009246 1.6e-23 112.8 102 64.7
Lsat_1_v5_gn_3_90700 Lactuca sativa HOM05D007328 ORTHO05D009246 1.6e-23 112.8 105 60.0
TPR.G37571 Trifolium pratense HOM05D007328 ORTHO05D009246 1.6e-23 112.8 107 57.0
arahy.Tifrunner.gnm1.ann1.VT7US1 Arachis hypogaea HOM05D007328 ORTHO05D009246 3.5e-23 111.7 98 65.3
Carub.0002s1493 Capsella rubella HOM05D007328 ORTHO05D009246 3.5e-23 111.7 102 63.7
AL2G39190 Arabidopsis lyrata HOM05D007328 ORTHO05D009246 4.6e-23 111.3 102 62.7
AT1G78790 Arabidopsis thaliana HOM05D007328 ORTHO05D009246 4.6e-23 111.3 102 63.7
Duzib068G0271 Durio zibethinus HOM05D007328 ORTHO05D009246 6.0e-23 110.9 102 62.7
Lj4g0027684 Lotus japonicus HOM05D007328 ORTHO05D009246 1.0e-22 110.2 107 59.8
Ca_19431_v3 Cicer arietinum L. HOM05D007328 ORTHO05D009246 1.3e-22 109.8 107 60.7
Migut.D02033 Erythranthe guttata HOM05D007328 ORTHO05D009246 1.3e-22 109.8 107 57.9
Phvul.003G206900 Phaseolus vulgaris HOM05D007328 ORTHO05D009246 1.3e-22 109.8 107 60.7
Gorai.006G269700 Gossypium raimondii HOM05D007328 ORTHO05D009246 3.0e-22 108.6 104 63.5
CARHR072340 Cardamine hirsuta HOM05D007328 ORTHO05D009246 6.7e-22 107.5 102 60.8
Gohir.A09G244400 Gossypium hirsutum HOM05D007328 ORTHO05D009246 6.7e-22 107.5 104 63.5
SHI17354 Sapria himalayana HOM05D007328 ORTHO05D009246 6.7e-22 107.5 106 60.4
Medtr4g104430 Medicago truncatula HOM05D007328 ORTHO05D009246 1.5e-21 106.3 107 57.9
Gohir.D09G245301 Gossypium hirsutum HOM05D007328 ORTHO05D009246 3.3e-21 105.1 104 61.5
CSS0030634 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 9.6e-21 103.6 99 59.6
HanXRQChr08g0235201 Helianthus annuus HOM05D007328 ORTHO05D009246 1.3e-20 103.2 101 58.4
Lalb_Chr07g0183141 Lupinus albus HOM05D007328 ORTHO05D009246 2.8e-20 102.1 107 57.9
SalBow6G3374 Salvia bowleyana HOM05D007328 ORTHO05D009246 1.1e-19 100.1 99 56.6
Sabra12G0065400 Salix brachista HOM05D007328 ORTHO05D009246 1.8e-19 99.4 83 68.7
CDE02G4603 Ceratophyllum demersum HOM05D007328 ORTHO05D009246 6.9e-19 97.4 114 50.9
HPP92_017655 Vanilla planifolia HOM05D007328 ORTHO05D009246 6.9e-19 97.4 105 54.3
Os04g0481500 Oryza sativa ssp. japonica HOM05D007328 ORTHO05D009246 2.0e-18 95.9 102 55.9
Psat4g062040 Pisum sativum HOM05D007328 ORTHO05D009246 1.7e-17 92.8 89 60.7
AagrBONN_evm.TU.Sc2ySwM_369.482 Anthoceros agrestis HOM05D007328 ORTHO05D009246 1.1e-16 90.1 109 50.5
Pp3c15_7370 Physcomitrium patens HOM05D007328 ORTHO05D009246 1.1e-16 90.1 102 49.0
BolC6t40286H Brassica oleracea HOM05D007328 ORTHO05D009246 2.4e-16 89.0 84 63.1
C03p92780 Brassica napus HOM05D007328 ORTHO05D009246 7.1e-16 87.4 84 61.9
Manes.06G112300 Manihot esculenta HOM05D007328 ORTHO05D009246 1.2e-15 86.7 89 56.2
unitig_62.g23226 Utricularia gibba HOM05D007328 ORTHO05D009246 1.2e-15 86.7 99 52.5
vmacro16689 Vaccinium macrocarpon HOM05D007328 ORTHO05D009246 1.2e-15 86.7 66 74.2
Aa31LG4G2240 Aethionema arabicum HOM05D007328 ORTHO05D009246 2.7e-15 85.5 64 73.4
Nn3g16640 Nelumbo nucifera HOM05D007328 ORTHO05D009246 6.7e-14 80.9 68 64.7
AUR62001234 Chenopodium quinoa HOM05D007328 ORTHO05D009246 3.3e-13 78.6 69 68.1
QL10p005934 Quercus lobata HOM05D007328 ORTHO05D009246 9.6e-13 77.0 66 65.2
Ca_30674_v3 Cicer arietinum L. HOM05D007328 ORTHO05D009246 2.1e-12 75.9 69 63.8
SEGI_23865 Sequoiadendron giganteum HOM05D007328 ORTHO05D009246 8.2e-12 73.9 66 63.6
Mapoly0166s0013 Marchantia polymorpha HOM05D007328 ORTHO05D009246 3.1e-11 72.0 83 50.6
Atru.chr9.1808 Acer truncatum HOM05D007328 ORTHO05D009246 5.3e-11 71.2 55 72.7
Thhalv10019789m.g Eutrema salsugineum HOM05D007328 ORTHO05D009246 9.0e-11 70.5 53 73.6
Actinidia08840 Actinidia chinensis HOM05D007328 ORTHO05D009246 1.2e-10 70.1 51 70.6
ATR0199G045 Amborella trichopoda HOM05D007328 ORTHO05D009246 1.3e-09 66.6 51 72.5
MBI10_g15972_MAGBIO Magnolia biondii HOM05D007328 ORTHO05D009246 1.3e-09 66.6 54 70.4
SMO203G0244 Selaginella moellendorffii HOM05D007328 ORTHO05D009246 7.1e-08 60.8 54 64.8
ECA233G5563 Erigeron canadensis HOM05D000006 ORTHO05D000001 9.3e-08 60.5 56 64.3
CSS0039715 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 4.6e-07 58.2 104 38.5
MCO11G116 Micromonas commoda HOM05D007328 ORTHO05D009246 7.9e-07 57.4 102 37.3


User provided reference genes

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