Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 1.8e-76 289.3 156 100.0
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 1.2e-75 286.6 156 98.7
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 5.6e-62 241.1 153 85.0
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 9.0e-44 180.6 104 91.3
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 3.4e-43 178.7 156 66.0
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 7.6e-43 177.6 166 65.1
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 8.4e-42 174.1 166 66.9
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 3.2e-41 172.2 157 65.0
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 2.1e-40 169.5 160 61.2
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 2.1e-40 169.5 159 64.8
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.8e-39 166.4 159 62.3
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 1.8e-39 166.4 162 63.0
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 8.7e-39 164.1 159 59.7
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 2.5e-38 162.5 161 62.1
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 2.5e-38 162.5 160 61.2
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 2.5e-38 162.5 160 61.2
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 3.3e-38 162.2 156 60.9
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 5.7e-38 161.4 160 62.5
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 1.3e-37 160.2 156 62.8
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 1.3e-37 160.2 157 61.8
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 1.3e-37 160.2 162 60.5
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 2.8e-37 159.1 156 64.1
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 4.8e-37 158.3 156 62.2
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 4.8e-37 158.3 160 60.0
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 4.8e-37 158.3 154 60.4
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.1e-36 157.1 153 62.7
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 1.1e-36 157.1 152 60.5
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 2.4e-36 156.0 150 62.7
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 2.4e-36 156.0 156 62.8
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 3.1e-36 155.6 152 64.5
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 3.1e-36 155.6 160 61.9
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 4.1e-36 155.2 158 59.5
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 5.3e-36 154.8 164 57.3
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 9.0e-36 154.1 146 62.3
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.2e-35 153.7 164 59.1
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 1.5e-35 153.3 154 58.4
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.6e-35 152.5 149 62.4
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 3.4e-35 152.1 154 61.7
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 5.9e-35 151.4 159 57.9
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 7.7e-35 151.0 153 58.8
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 1.0e-34 150.6 161 60.2
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 1.3e-34 150.2 161 59.6
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 2.2e-34 149.4 156 59.6
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 2.2e-34 149.4 166 59.0
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 2.9e-34 149.1 165 61.8
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 2.9e-34 149.1 146 58.9
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 2.9e-34 149.1 150 60.7
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.8e-34 148.7 149 63.1
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 3.8e-34 148.7 160 56.9
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 1.1e-33 147.1 156 56.4
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 1.1e-33 147.1 152 63.2
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.4e-33 146.7 158 57.6
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.9e-33 146.4 157 55.4
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 2.5e-33 146.0 157 58.0
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 2.5e-33 146.0 160 56.9
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 5.5e-33 144.8 155 56.8
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 5.5e-33 144.8 152 57.9
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 5.5e-33 144.8 158 58.2
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 9.4e-33 144.1 153 59.5
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 1.2e-32 143.7 162 58.6
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 1.6e-32 143.3 154 59.1
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 3.6e-32 142.1 146 58.9
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 4.6e-32 141.7 148 61.5
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 1.0e-31 140.6 160 56.2
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 1.4e-31 140.2 129 65.1
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 1.1e-30 137.1 142 57.7
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.1e-30 137.1 159 56.0
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 1.5e-30 136.7 179 54.2
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 1.5e-30 136.7 191 48.7
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 2.5e-30 136.0 142 56.3
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 2.5e-30 136.0 148 56.8
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 3.3e-30 135.6 160 53.8
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 7.4e-30 134.4 143 60.8
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 9.7e-30 134.0 142 57.0
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 9.7e-30 134.0 142 57.0
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 9.7e-30 134.0 156 55.8
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 1.7e-29 133.3 149 56.4
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 2.2e-29 132.9 157 53.5
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 2.2e-29 132.9 152 55.9
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 2.2e-29 132.9 140 62.1
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 2.8e-29 132.5 148 56.8
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 4.8e-29 131.7 146 54.1
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 4.8e-29 131.7 159 54.7
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 6.9e-28 127.9 142 55.6
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 9.1e-28 127.5 142 54.9
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.5e-27 126.7 142 54.9
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 2.0e-27 126.3 155 52.3
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 2.0e-27 126.3 153 52.9
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 2.6e-27 125.9 146 56.2
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 4.5e-27 125.2 126 60.3
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 5.9e-27 124.8 142 54.2
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 5.9e-27 124.8 162 51.9
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 7.7e-27 124.4 143 54.5
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 2.9e-26 122.5 121 61.2
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 5.0e-26 121.7 134 59.7
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 5.0e-26 121.7 134 59.7
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.4e-25 120.2 142 58.5
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 1.4e-25 120.2 169 49.7
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 5.5e-25 118.2 136 56.6
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 9.4e-25 117.5 146 54.1
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 9.4e-25 117.5 156 50.6
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 9.4e-25 117.5 161 47.2
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 2.7e-24 115.9 155 52.9
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 4.7e-24 115.2 161 47.2
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 1.4e-23 113.6 161 50.9
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 2.3e-23 112.8 138 52.2
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 6.7e-23 111.3 147 46.9
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 3.3e-22 109.0 154 46.8
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.7e-22 108.2 137 54.0
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 8.2e-21 104.4 162 44.4
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.1e-20 104.0 169 49.1
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 1.4e-20 103.6 153 47.7
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 2.4e-20 102.8 114 61.4
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.3e-18 97.1 115 54.8
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 1.7e-18 96.7 148 45.3
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 2.2e-18 96.3 137 47.4
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 2.9e-18 95.9 161 44.7
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 2.9e-18 95.9 94 60.6
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 3.8e-18 95.5 148 49.3
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 5.0e-18 95.1 64 73.4
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.5e-17 92.8 99 60.6
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 3.2e-17 92.4 157 45.2
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 4.2e-17 92.0 153 42.5
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 9.4e-17 90.9 78 62.8
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 1.6e-16 90.1 169 40.8
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 1.1e-14 84.0 110 49.1
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 1.1e-14 84.0 84 59.5
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 5.7e-14 81.6 110 48.2
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 1.8e-12 76.6 107 46.7
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 2.6e-11 72.8 145 40.0
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 3.5e-11 72.4 150 38.0
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 2.2e-10 69.7 56 67.9
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 3.8e-10 68.9 89 55.1
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.5e-10 68.2 77 55.8
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 8.5e-10 67.8 58 69.0
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 8.5e-10 67.8 58 69.0
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.5e-09 66.2 58 67.2
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.2e-09 65.5 56 69.6
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 9.4e-09 64.3 83 48.2
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 6.1e-08 61.6 77 50.6
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 6.7e-07 58.2 39 74.4
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 6.7e-07 58.2 79 55.7
Cre02.g097334 Chlamydomonas reinhardtii HOM05D004927 ORTHO05D005798 3.3e-06 55.8 154 32.5
ECA232G0032 Erigeron canadensis HOM05D004927 ORTHO05D005798 5.7e-06 55.1 96 42.7


User provided reference genes

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