Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 1.4e-66 256.5 172 100.0
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 9.6e-63 243.8 172 96.5
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 6.0e-57 224.6 170 96.5
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 1.8e-37 159.8 168 79.2
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 3.2e-34 149.1 186 61.3
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 5.5e-34 148.3 175 74.3
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 9.3e-34 147.5 178 71.9
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 2.1e-33 146.4 181 73.5
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 2.1e-33 146.4 175 73.1
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 3.5e-33 145.6 182 71.4
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 3.5e-33 145.6 180 68.3
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 7.9e-33 144.4 172 65.7
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 1.8e-32 143.3 176 71.6
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 1.8e-32 143.3 181 56.9
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 5.1e-32 141.7 176 68.2
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 9.7e-31 137.5 176 63.1
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 1.3e-30 137.1 178 66.3
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 4.8e-30 135.2 179 65.9
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 8.2e-30 134.4 174 60.3
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 1.8e-29 133.3 176 58.5
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 3.1e-29 132.5 180 70.0
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 5.3e-29 131.7 178 69.1
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 1.5e-28 130.2 179 62.0
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 1.5e-28 130.2 178 66.3
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 2.0e-28 129.8 155 70.3
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 3.4e-28 129.0 182 68.7
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 4.5e-28 128.6 175 63.4
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 7.6e-28 127.9 176 49.4
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 1.3e-27 127.1 181 60.8
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 1.3e-27 127.1 178 68.0
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 1.7e-27 126.7 182 64.3
TWI23G0456 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 1.7e-27 126.7 175 68.6
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 2.2e-27 126.3 178 68.0
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 5.0e-27 125.2 174 65.5
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 6.5e-27 124.8 181 66.3
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 4.2e-26 122.1 173 54.3
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 9.3e-26 120.9 175 64.6
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 6.1e-25 118.2 160 63.1
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 7.9e-25 117.9 174 53.4
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.0e-24 117.5 170 64.1
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 1.0e-24 117.5 175 60.6
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 1.3e-24 117.1 171 62.0
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 1.8e-24 116.7 173 66.5
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.9e-24 115.5 176 62.5
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 3.9e-24 115.5 176 62.5
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 1.1e-23 114.0 174 60.9
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 1.9e-23 113.2 177 46.9
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 4.3e-23 112.1 169 47.3
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 4.3e-23 112.1 175 45.7
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 5.7e-23 111.7 175 50.9
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 7.4e-23 111.3 172 61.0
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 7.4e-23 111.3 175 58.3
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 7.4e-23 111.3 178 60.1
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 9.7e-23 110.9 175 45.1
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 9.7e-23 110.9 176 59.1
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 9.7e-23 110.9 176 59.1
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 1.3e-22 110.5 176 62.5
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 1.3e-22 110.5 179 61.5
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 2.2e-22 109.8 185 51.4
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 2.2e-22 109.8 185 56.8
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 2.8e-22 109.4 177 59.9
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 6.3e-22 108.2 119 59.7
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 8.2e-22 107.8 164 59.8
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 1.4e-21 107.1 175 53.1
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.4e-21 107.1 175 43.4
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 3.1e-21 105.9 172 61.6
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 4.1e-21 105.5 170 55.3
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 1.2e-20 104.0 174 60.9
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 1.5e-20 103.6 170 51.8
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 4.5e-20 102.1 173 62.4
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 5.9e-20 101.7 172 56.4
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 5.9e-20 101.7 172 61.6
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 7.7e-20 101.3 142 45.1
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 7.7e-20 101.3 173 42.8
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 7.7e-20 101.3 171 61.4
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.0e-19 100.9 176 42.0
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 1.0e-19 100.9 172 50.0
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.7e-19 100.1 176 42.0
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 3.8e-19 99.0 175 54.9
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 3.8e-19 99.0 180 58.3
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 3.8e-19 99.0 172 60.5
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 8.5e-19 97.8 171 60.2
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 1.1e-18 97.4 173 62.4
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 1.1e-18 97.4 173 45.7
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 1.4e-18 97.1 178 58.4
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 2.5e-18 96.3 183 59.0
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 7.2e-18 94.7 169 40.2
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 7.2e-18 94.7 91 90.1
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 9.4e-18 94.4 183 58.5
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 1.6e-17 93.6 118 55.1
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 3.6e-17 92.4 180 52.2
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 3.6e-17 92.4 160 56.9
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 6.1e-17 91.7 168 54.8
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 7.9e-17 91.3 174 39.7
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 7.9e-17 91.3 174 39.7
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.0e-16 90.9 129 50.4
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 3.9e-16 89.0 130 46.2
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 3.9e-16 89.0 174 39.7
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 6.7e-16 88.2 152 59.2
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 8.8e-16 87.8 170 39.4
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 8.8e-16 87.8 152 40.8
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 2.0e-15 86.7 122 44.3
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 2.6e-15 86.3 182 53.8
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 3.3e-15 85.9 170 38.8
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 3.3e-15 85.9 174 56.9
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 3.3e-15 85.9 169 38.5
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 3.3e-15 85.9 169 38.5
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 4.4e-15 85.5 169 37.9
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 4.4e-15 85.5 169 37.9
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 4.4e-15 85.5 169 37.9
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 5.7e-15 85.1 167 40.1
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 9.7e-15 84.3 248 43.1
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 9.7e-15 84.3 122 45.1
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 1.7e-14 83.6 200 47.5
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 1.7e-14 83.6 179 56.4
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 2.2e-14 83.2 174 50.6
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 2.8e-14 82.8 163 39.9
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 3.7e-14 82.4 169 38.5
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 3.7e-14 82.4 200 46.5
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 6.3e-14 81.6 169 37.9
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 8.2e-14 81.3 130 42.3
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 1.4e-13 80.5 168 53.6
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 5.3e-13 78.6 86 50.0
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 1.2e-12 77.4 187 37.4
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 3.4e-12 75.9 124 43.5
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 1.0e-11 74.3 125 41.6
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 1.3e-11 73.9 170 32.9
HanXRQChr05g0155191 Helianthus annuus HOM05D005335 ORTHO05D006472 3.8e-11 72.4 171 51.5
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 1.2e-09 67.4 174 54.6
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 1.2e-09 67.4 176 47.7
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 1.6e-09 67.0 116 44.8
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 3.6e-09 65.9 117 47.9
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 6.1e-09 65.1 122 38.5
SGA_v2.0_scaffold5G02870 Striga asiatica HOM05D005335 ORTHO05D006472 3.3e-07 59.3 170 47.1
Lsat_1_v5_gn_1_28901 Lactuca sativa HOM05D005335 ORTHO05D006472 1.7e-06 57.0 113 39.8


User provided reference genes

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