Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 2.7e-47 191.8 108 100.0
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 3.9e-46 188.0 107 89.7
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 6.5e-41 170.6 107 80.4
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 3.9e-30 134.8 107 65.4
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 4.2e-24 114.8 107 50.5
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 1.6e-23 112.8 108 50.0
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 2.1e-23 112.5 107 49.5
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 7.9e-23 110.5 107 48.6
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 1.7e-20 102.8 107 49.5
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 1.7e-20 102.8 108 49.1
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 2.8e-20 102.1 108 47.2
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 3.7e-20 101.7 107 48.6
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 4.8e-20 101.3 107 47.7
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 8.2e-20 100.5 108 47.2
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 8.2e-20 100.5 107 48.6
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 1.4e-19 99.8 107 46.7
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 1.8e-19 99.4 107 46.7
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 2.4e-19 99.0 108 46.3
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.1e-19 98.6 107 44.9
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.1e-19 98.6 107 44.9
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.1e-19 98.6 107 44.9
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 6.9e-19 97.4 114 44.7
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 6.9e-19 97.4 107 44.9
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 6.9e-19 97.4 108 50.0
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 9.1e-19 97.1 107 43.0
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 2.0e-18 95.9 107 44.9
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.0e-18 95.9 107 43.9
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 2.0e-18 95.9 107 45.8
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 2.0e-18 95.9 108 45.4
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 5.9e-18 94.4 108 44.4
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 1.3e-17 93.2 107 43.0
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 2.2e-17 92.4 98 44.9
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 2.2e-17 92.4 108 43.5
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 6.5e-17 90.9 108 42.6
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 6.5e-17 90.9 107 44.9
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 8.5e-17 90.5 107 43.0
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 8.5e-17 90.5 108 43.5
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 8.5e-17 90.5 107 41.1
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 1.1e-16 90.1 107 43.0
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.1e-16 90.1 108 43.5
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 1.9e-16 89.4 102 44.1
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 2.5e-16 89.0 108 43.5
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 3.2e-16 88.6 98 43.9
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 3.2e-16 88.6 107 43.0
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 5.5e-16 87.8 86 48.8
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 7.2e-16 87.4 108 39.8
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 7.2e-16 87.4 102 42.2
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 1.2e-15 86.7 105 41.9
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 2.1e-15 85.9 107 41.1
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 2.1e-15 85.9 108 42.6
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 2.7e-15 85.5 107 42.1
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 2.7e-15 85.5 99 44.4
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 3.6e-15 85.1 107 42.1
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 3.6e-15 85.1 108 42.6
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 6.1e-15 84.3 107 39.3
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 6.1e-15 84.3 107 40.2
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 1.0e-14 83.6 107 41.1
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 1.4e-14 83.2 105 41.0
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 2.3e-14 82.4 107 38.3
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 2.3e-14 82.4 109 42.2
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 3.0e-14 82.0 108 41.7
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 5.2e-14 81.3 107 40.2
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 5.2e-14 81.3 107 38.3
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 6.7e-14 80.9 108 38.9
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 6.7e-14 80.9 108 39.8
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 1.1e-13 80.1 99 41.4
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 2.0e-13 79.3 107 39.3
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 2.0e-13 79.3 105 39.0
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 2.6e-13 79.0 107 38.3
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 4.4e-13 78.2 98 41.8
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 4.4e-13 78.2 106 37.7
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 5.7e-13 77.8 107 38.3
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 9.7e-13 77.0 78 44.9
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.3e-12 76.6 78 44.9
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 1.7e-12 76.3 102 41.2
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 1.7e-12 76.3 107 38.3
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.8e-12 75.5 78 44.9
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 2.8e-12 75.5 120 36.7
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 6.3e-12 74.3 100 41.0
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 6.3e-12 74.3 107 37.4
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 1.1e-11 73.6 96 39.6
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 3.1e-11 72.0 107 35.5
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 5.3e-11 71.2 100 40.0
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 9.1e-11 70.5 86 41.9
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.2e-10 70.1 99 38.4
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 1.2e-10 70.1 96 40.6
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 2.0e-10 69.3 107 36.4
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 2.6e-10 68.9 109 36.7
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.6e-10 68.9 78 43.6
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 1.0e-09 67.0 96 40.6
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 1.3e-09 66.6 105 32.4
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 3.8e-09 65.1 73 42.5
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 5.0e-09 64.7 97 36.1
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 6.5e-09 64.3 94 33.0
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 8.5e-09 63.9 101 33.7
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 1.1e-08 63.5 107 35.5
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 9.4e-08 60.5 95 33.7
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 9.4e-08 60.5 95 33.7
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 9.4e-08 60.5 94 34.0
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 2.7e-07 58.9 95 32.6
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 4.7e-07 58.2 104 32.7
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 4.7e-07 58.2 108 31.5
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 1.0e-06 57.0 101 33.7
Migut.D01629 Erythranthe guttata HOM05D004264 ORTHO05D004680 2.3e-06 55.8 108 31.5
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 4.0e-06 55.1 108 34.3
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 5.2e-06 54.7 103 32.0
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 5.2e-06 54.7 103 31.1
Migut.J00117 Erythranthe guttata HOM05D004264 ORTHO05D004680 5.2e-06 54.7 95 30.5
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 5.2e-06 54.7 48 47.9


User provided reference genes

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