Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 4.0e-254 880.9 447 100.0
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 3.9e-249 864.4 447 95.1
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 2.2e-236 822.0 449 92.2
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 1.1e-211 740.0 428 82.9
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 1.4e-201 706.4 415 82.2
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 3.1e-174 615.5 427 69.3
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.0e-169 600.5 427 67.4
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 3.0e-169 599.0 427 67.4
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 3.4e-168 595.5 427 67.2
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 1.3e-164 583.6 426 66.2
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 4.7e-162 575.1 430 65.1
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 1.5e-160 570.1 429 64.3
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 4.4e-160 568.5 427 65.6
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 9.2e-158 560.8 427 62.5
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 2.7e-157 559.3 427 63.2
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 4.6e-157 558.5 427 64.6
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 4.6e-157 558.5 427 62.5
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.7e-156 556.6 427 62.5
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 4.3e-155 552.0 427 62.3
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 2.8e-154 549.3 436 62.8
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 8.0e-154 547.7 429 62.9
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 4.0e-153 545.4 439 61.3
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 6.8e-153 544.7 438 62.8
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 1.3e-151 540.4 427 61.4
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 1.1e-150 537.3 435 61.8
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 2.4e-150 536.2 433 61.0
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 5.4e-150 535.0 430 63.0
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 9.2e-150 534.3 435 61.6
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 2.1e-149 533.1 438 62.8
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 2.1e-149 533.1 431 60.8
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 1.2e-146 523.9 428 58.4
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 4.7e-146 521.9 453 60.0
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 1.4e-145 520.4 432 61.1
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 5.2e-145 518.5 438 57.3
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 5.8e-144 515.0 430 59.5
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 1.7e-143 513.5 420 61.0
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 2.2e-143 513.1 423 58.4
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 6.4e-143 511.5 430 60.5
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 3.2e-142 509.2 439 58.1
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 1.6e-141 506.9 432 57.6
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 2.7e-141 506.1 432 57.9
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 2.7e-141 506.1 376 64.9
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 4.6e-141 505.4 432 57.4
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 7.8e-141 504.6 434 58.1
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 1.0e-140 504.2 431 59.2
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.3e-140 503.8 423 57.9
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 1.7e-140 503.4 436 58.7
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 5.6e-139 498.4 431 58.5
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 1.6e-138 496.9 433 58.0
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 6.2e-138 495.0 435 57.0
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.1e-137 494.2 377 62.3
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 1.1e-137 494.2 467 53.3
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 3.1e-137 492.7 433 58.0
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 8.9e-137 491.1 431 57.8
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 8.9e-137 491.1 425 57.4
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 4.4e-136 488.8 433 57.3
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 4.4e-136 488.8 433 57.3
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 5.8e-136 488.4 433 57.3
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 2.2e-135 486.5 433 57.0
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 2.9e-135 486.1 439 57.9
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 3.8e-135 485.7 433 56.8
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 5.4e-134 481.9 472 52.8
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 1.7e-132 476.9 414 56.8
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 8.7e-132 474.6 431 56.4
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 5.6e-131 471.9 418 57.4
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 6.2e-130 468.4 431 55.7
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 4.4e-128 462.2 383 57.7
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 2.2e-127 459.9 383 60.1
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.4e-126 457.2 385 56.6
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 3.2e-126 456.1 439 51.3
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 2.1e-125 453.4 491 49.9
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 6.0e-125 451.8 398 57.0
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 7.8e-125 451.4 430 55.6
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 9.6e-123 444.5 437 53.5
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 3.6e-122 442.6 439 50.3
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 1.1e-121 441.0 439 52.8
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.4e-121 440.7 443 53.0
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 1.4e-121 440.7 442 53.2
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 9.0e-121 438.0 382 56.3
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 2.6e-120 436.4 421 50.8
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 1.7e-119 433.7 379 56.5
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 2.2e-119 433.3 432 53.7
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 3.8e-119 432.6 433 51.5
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 1.9e-118 430.3 378 56.6
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 4.2e-118 429.1 381 57.0
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 2.7e-117 426.4 432 51.9
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 1.3e-116 424.1 433 50.8
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 3.9e-116 422.5 378 54.0
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 6.7e-116 421.8 372 57.0
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 1.5e-112 410.6 449 49.4
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 1.5e-112 410.6 436 50.9
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 2.0e-112 410.2 507 44.6
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 5.8e-112 408.7 378 54.0
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 3.8e-111 406.0 350 57.7
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 1.1e-110 404.4 427 50.1
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 2.5e-110 403.3 430 49.5
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 3.2e-110 402.9 430 49.8
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 9.3e-110 401.4 417 52.0
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 1.3e-108 397.5 346 60.7
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 2.3e-108 396.7 430 49.1
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 5.1e-108 395.6 324 59.6
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 2.6e-104 383.3 444 47.7
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 3.4e-104 382.9 377 50.4
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 6.5e-103 378.6 294 61.6
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 1.3e-100 370.9 392 50.0
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 3.9e-100 369.4 403 49.6
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 7.4e-99 365.2 443 45.4
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 5.9e-96 355.5 438 46.6
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 2.9e-95 353.2 438 46.6
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 1.6e-93 347.4 434 47.7
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 1.0e-92 344.7 418 43.3
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 2.5e-91 340.1 448 45.1
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 9.7e-91 338.2 454 40.5
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 1.7e-90 337.4 388 48.5
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 2.8e-90 336.7 415 44.3
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 3.7e-90 336.3 430 41.2
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 6.3e-90 335.5 434 41.9
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 1.1e-89 334.7 425 47.1
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 3.2e-86 323.2 346 50.6
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 5.0e-79 299.3 426 38.5
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.5e-70 271.2 387 38.8
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 7.2e-70 268.9 271 52.0
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 8.0e-61 238.8 431 33.6
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 1.0e-47 195.3 287 42.5
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 2.1e-29 134.4 130 54.6
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 3.3e-22 110.5 146 43.8
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.0e-15 89.0 86 48.8
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 1.7e-15 88.2 55 78.2
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 1.3e-13 82.0 51 74.5
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 4.8e-13 80.1 52 73.1
Dinv21288 Davidia involucrata HOM05D005756 ORTHO05D018916 3.8e-10 70.5 67 52.2
DCAR_019685 Daucus carota HOM05D005756 ORTHO05D018916 1.4e-09 68.6 53 64.2
Oeu027645.1 Olea europaea HOM05D005756 ORTHO05D018916 1.4e-09 68.6 52 67.3
Sc21g0000680 Simmondsia chinensis HOM05D005756 ORTHO05D018916 5.6e-06 56.6 39 66.7
Solyc07g045560.1 Solanum lycopersicum HOM05D005756 ORTHO05D018916 9.6e-06 55.8 39 64.1


User provided reference genes

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