Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025942.2 Cucumis melo HOM05D006836 ORTHO05D008691 5.5e-167 590.9 296 100.0
ClCG02G009110 Citrullus lanatus HOM05D006836 ORTHO05D008691 2.1e-126 456.1 274 84.7
CsaV3_6G009720 Cucumis sativus L. HOM05D006836 ORTHO05D008691 2.5e-103 379.4 211 91.9
Sed0023251 Sechium edule HOM05D006836 ORTHO05D008691 1.9e-98 363.2 276 70.7
TAR629G0496 Trochodendron aralioides HOM05D006836 ORTHO05D008691 9.3e-82 307.8 281 58.7
Dinv21313 Davidia involucrata HOM05D006836 ORTHO05D008691 1.6e-81 307.0 275 59.6
CiPaw.03G283000 Carya illinoinensis HOM05D006836 ORTHO05D008691 7.9e-81 304.7 276 60.1
RcHm_v2.0_Chr2g0155731 Rosa chinensis HOM05D006836 ORTHO05D008691 5.1e-80 302.0 275 58.9
CANSAT64G2876 Cannabis sativa HOM05D006836 ORTHO05D008691 1.3e-78 297.4 282 57.1
FvH4_6g40480 Fragaria vesca HOM05D006836 ORTHO05D008691 1.3e-78 297.4 277 57.0
Actinidia09801 Actinidia chinensis HOM05D006836 ORTHO05D008691 3.6e-78 295.8 273 57.5
QL04p067653 Quercus lobata HOM05D006836 ORTHO05D008691 3.6e-78 295.8 277 57.4
MBI14_g24036_MAGBIO Magnolia biondii HOM05D006836 ORTHO05D008691 4.8e-78 295.4 268 58.2
Rhsim06G0178100 Rhododendron simsii HOM05D006836 ORTHO05D008691 1.1e-77 294.3 271 56.8
GSVIVG01030118001 Vitis vinifera HOM05D006836 ORTHO05D008691 2.4e-77 293.1 275 57.1
vmacro12068 Vaccinium macrocarpon HOM05D006836 ORTHO05D008691 3.1e-77 292.7 277 56.7
Manes.13G060700 Manihot esculenta HOM05D006836 ORTHO05D008691 5.3e-77 292.0 278 57.2
Gohir.D07G199300 Gossypium hirsutum HOM05D006836 ORTHO05D008691 2.9e-75 286.2 276 54.7
Lalb_Chr10g0094621 Lupinus albus HOM05D006836 ORTHO05D008691 2.9e-75 286.2 281 55.9
Gohir.A07G192900 Gossypium hirsutum HOM05D006836 ORTHO05D008691 3.8e-75 285.8 274 55.1
Gorai.001G223100 Gossypium raimondii HOM05D006836 ORTHO05D008691 3.8e-75 285.8 274 55.1
Duzib133G0147 Durio zibethinus HOM05D006836 ORTHO05D008691 4.9e-75 285.4 276 55.1
Nitab4.5_0004852g0030 Nicotiana tabacum HOM05D006836 ORTHO05D008691 4.9e-75 285.4 274 56.6
Nn1g07540 Nelumbo nucifera HOM05D006836 ORTHO05D008691 8.4e-75 284.6 279 54.5
Ciclev10015848m.g Citrus clementina HOM05D006836 ORTHO05D008691 1.1e-74 284.3 280 56.4
PSO541G5262 Papaver somniferum HOM05D006836 ORTHO05D008691 1.4e-74 283.9 283 56.5
Cfa014210 Carpinus fangiana HOM05D006836 ORTHO05D008691 3.2e-74 282.7 298 54.0
PSO675G1370 Papaver somniferum HOM05D006836 ORTHO05D008691 3.2e-74 282.7 292 55.1
Thecc.01G198300 Theobroma cacao HOM05D006836 ORTHO05D008691 4.2e-74 282.3 281 54.4
DCAR_012739 Daucus carota HOM05D006836 ORTHO05D008691 5.5e-74 282.0 176 73.9
Glyma.13G010200 Glycine max HOM05D006836 ORTHO05D008691 5.5e-74 282.0 275 57.8
MD09G1129600 Malus domestica HOM05D006836 ORTHO05D008691 2.7e-73 279.6 267 55.8
Lj6g0007987 Lotus japonicus HOM05D006836 ORTHO05D008691 3.5e-73 279.3 287 54.7
Aqoxy1G03080 Aquilegia oxysepala HOM05D006836 ORTHO05D008691 7.9e-73 278.1 174 75.9
VMungo0647G0281 Vigna mungo HOM05D006836 ORTHO05D008691 7.9e-73 278.1 265 55.8
CSS0020520 Camellia sinensis var. sinensis HOM05D006836 ORTHO05D008691 1.0e-72 277.7 283 55.5
Phvul.L001691 Phaseolus vulgaris HOM05D006836 ORTHO05D008691 2.3e-72 276.6 265 55.5
Solyc07g045300.4 Solanum lycopersicum HOM05D006836 ORTHO05D008691 2.3e-72 276.6 272 57.7
PGR031G1777 Punica granatum HOM05D006836 ORTHO05D008691 3.0e-72 276.2 271 55.7
Peaxi162Scf00612g00142 Petunia axillaris HOM05D006836 ORTHO05D008691 1.5e-71 273.9 283 54.4
Glyma.20G060000 Glycine max HOM05D006836 ORTHO05D008691 3.3e-71 272.7 272 56.2
Sopen07g023830 Solanum pennellii HOM05D006836 ORTHO05D008691 5.6e-71 271.9 188 71.8
PGSC0003DMG400017381 Solanum tuberosum HOM05D006836 ORTHO05D008691 2.1e-70 270.0 188 71.8
Ca_16339_v3 Cicer arietinum L. HOM05D006836 ORTHO05D008691 2.8e-70 269.6 264 58.3
TPR.G16170 Trifolium pratense HOM05D006836 ORTHO05D008691 6.2e-70 268.5 271 55.4
TWI75G1319 Tripterygium wilfordii HOM05D006836 ORTHO05D008691 1.1e-69 267.7 270 54.1
Eucgr.K01397 Eucalyptus grandis HOM05D006836 ORTHO05D008691 4.0e-69 265.8 271 53.1
Haze_12601 Corylus avellana HOM05D006836 ORTHO05D008691 6.9e-69 265.0 315 50.2
AUR62014994 Chenopodium quinoa HOM05D006836 ORTHO05D008691 9.0e-69 264.6 273 52.0
Potri.014G169200 Populus trichocarpa HOM05D006836 ORTHO05D008691 9.0e-69 264.6 276 54.3
Zm00001eb176810 Zea mays HOM05D006836 ORTHO05D008691 1.2e-68 264.2 175 69.1
Sc21g0000470 Simmondsia chinensis HOM05D006836 ORTHO05D008691 2.6e-68 263.1 283 53.0
Hund15463 Selenicereus undatus HOM05D006836 ORTHO05D008691 7.6e-68 261.5 275 54.5
Oeu037218.2 Olea europaea HOM05D000879 ORTHO05D008691 1.0e-67 261.2 173 68.8
arahy.Tifrunner.gnm1.ann1.M09JG2 Arachis hypogaea HOM05D006836 ORTHO05D008691 1.3e-67 260.8 281 54.1
EL10Ac9g22661 Beta vulgaris HOM05D006836 ORTHO05D008691 4.9e-67 258.8 272 52.9
SEGI_40154 Sequoiadendron giganteum HOM05D006836 ORTHO05D008691 1.9e-66 256.9 186 66.1
arahy.Tifrunner.gnm1.ann1.GSTV0Y Arachis hypogaea HOM05D006836 ORTHO05D008691 2.5e-66 256.5 281 53.0
Nitab4.5_0005354g0030 Nicotiana tabacum HOM05D006836 ORTHO05D008691 3.2e-66 256.1 279 52.7
Prupe.3G195700 Prunus persica HOM05D006836 ORTHO05D008691 3.2e-66 256.1 242 57.9
Migut.M00056 Erythranthe guttata HOM05D006836 ORTHO05D008691 5.5e-66 255.4 279 52.0
Os08g0345400 Oryza sativa ssp. japonica HOM05D006836 ORTHO05D008691 1.6e-65 253.8 170 65.9
Carub.0003s2604 Capsella rubella HOM05D006836 ORTHO05D008691 2.7e-65 253.1 278 49.6
CARHR102220 Cardamine hirsuta HOM05D006836 ORTHO05D008691 2.7e-65 253.1 278 50.7
Psat5g104760 Pisum sativum HOM05D006836 ORTHO05D008691 3.5e-65 252.7 270 52.6
Medtr3g082680 Medicago truncatula HOM05D006836 ORTHO05D008691 4.6e-65 252.3 165 72.1
BcaC06g35865 Brassica carinata HOM05D006836 ORTHO05D008691 2.3e-64 250.0 282 49.3
BolC7t41479H Brassica oleracea HOM05D006836 ORTHO05D008691 2.3e-64 250.0 282 49.3
C07p10290 Brassica napus HOM05D006836 ORTHO05D008691 3.0e-64 249.6 282 50.4
Sp3g23200 Schrenkiella parvula HOM05D006836 ORTHO05D008691 3.0e-64 249.6 280 48.9
AT2G04360 Arabidopsis thaliana HOM05D006836 ORTHO05D008691 3.9e-64 249.2 275 49.1
BcaB06g26781 Brassica carinata HOM05D006836 ORTHO05D008691 3.9e-64 249.2 273 49.5
SGA_v2.0_scaffold73G24492 Striga asiatica HOM05D006836 ORTHO05D008691 3.9e-64 249.2 169 68.6
FAN02G3194 Fragaria x ananassa HOM05D006836 ORTHO05D008691 5.1e-64 248.8 241 55.2
BraA07t28465Z Brassica rapa HOM05D006836 ORTHO05D008691 8.7e-64 248.1 282 49.6
THA.LOC104808842 Tarenaya hassleriana HOM05D006836 ORTHO05D008691 8.7e-64 248.1 269 49.1
Cc00_g01020 Coffea canephora HOM05D006836 ORTHO05D008691 5.7e-63 245.4 171 64.3
unitig_62.g23534 Utricularia gibba HOM05D000211 ORTHO05D002682 2.8e-62 243.0 288 47.6
AL3G42030 Arabidopsis lyrata HOM05D006836 ORTHO05D008691 3.7e-62 242.7 280 49.3
A07p06710 Brassica napus HOM05D006836 ORTHO05D008691 3.7e-62 242.7 280 48.6
COL.COLO4_19642 Corchorus olitorius HOM05D006836 ORTHO05D008691 6.3e-62 241.9 254 55.5
Thhalv10002607m.g Eutrema salsugineum HOM05D006836 ORTHO05D008691 1.1e-61 241.1 277 49.1
Ah.01g002500 Amaranthus hybridus HOM05D006836 ORTHO05D008691 1.8e-61 240.4 268 50.7
Sabra14G0129000 Salix brachista HOM05D006836 ORTHO05D008691 2.4e-61 240.0 306 48.4
MSTRG.14912 Avicennia marina HOM05D006836 ORTHO05D008691 1.2e-60 237.7 289 44.6
Lsat_1_v5_gn_7_97361 Lactuca sativa HOM05D006836 ORTHO05D008691 1.5e-60 237.3 270 50.4
HanXRQChr11g0329431 Helianthus annuus HOM05D006836 ORTHO05D008691 1.1e-58 231.1 277 48.7
Cpa.g.sc136.39 Carica papaya HOM05D006836 ORTHO05D008691 2.5e-58 229.9 243 54.3
FAN10G4054 Fragaria x ananassa HOM05D006836 ORTHO05D008691 2.1e-57 226.9 301 45.8
FAN14G0130 Fragaria x ananassa HOM05D006836 ORTHO05D008691 2.1e-57 226.9 301 45.8
Haze_12612 Corylus avellana HOM05D006836 ORTHO05D008691 4.6e-57 225.7 259 51.7
AUR62029127 Chenopodium quinoa HOM05D006836 ORTHO05D008691 6.1e-57 225.3 155 67.1
Lj8A137G50 Lonicera japonica HOM05D006836 ORTHO05D008691 1.0e-56 224.6 142 73.2
ATR0751G245 Amborella trichopoda HOM05D006836 ORTHO05D008691 1.9e-55 220.3 155 64.5
ECA236G0162 Erigeron canadensis HOM05D006836 ORTHO05D008691 1.8e-53 213.8 145 69.7
Aa31sc202G50 Aethionema arabicum HOM05D006836 ORTHO05D008691 1.2e-49 201.1 241 48.5
AagrBONN_evm.TU.Sc2ySwM_117.1494 Anthoceros agrestis HOM05D006836 ORTHO05D008691 5.7e-47 192.2 241 43.6
Mapoly0098s0007 Marchantia polymorpha HOM05D006836 ORTHO05D008691 2.8e-46 189.9 173 52.6
CDE10G1136 Ceratophyllum demersum HOM05D006836 ORTHO05D008691 3.4e-44 183.0 122 68.0
SMO270G0068 Selaginella moellendorffii HOM05D006836 ORTHO05D008691 3.8e-43 179.5 169 47.9
Pp3c23_16310 Physcomitrium patens HOM05D006836 ORTHO05D008691 4.2e-42 176.0 224 42.0
HPP92_003030 Vanilla planifolia HOM05D006836 ORTHO05D008691 1.3e-35 154.5 201 45.8
CBR_g3513 Chara braunii HOM05D006836 ORTHO05D000407 1.8e-32 144.1 202 37.1
SEGI_21977 Sequoiadendron giganteum HOM05D006836 ORTHO05D008691 5.2e-32 142.5 84 77.4
Cre05.g234750 Chlamydomonas reinhardtii HOM05D006836 ORTHO05D008691 1.8e-29 134.0 183 38.8
MD07G1016400 Malus domestica HOM05D006836 ORTHO05D008691 2.7e-28 130.2 173 43.9
MD17G1118400 Malus domestica HOM05D006836 ORTHO05D008691 2.7e-28 130.2 173 43.9
Hma1.2p1_0599F.1_g187040 Hydrangea macrophylla HOM05D006836 ORTHO05D008691 4.1e-13 79.7 135 42.2
PRCOL_00003549 Prasinoderma coloniale HOM05D006836 ORTHO05D008691 7.3e-10 68.9 138 34.1
arahy.Tifrunner.gnm1.ann1.FY93PX Arachis hypogaea HOM05D006836 ORTHO05D000230 1.0e-08 65.1 60 56.7
MCO08G347 Micromonas commoda HOM05D006836 ORTHO05D008691 4.9e-06 56.2 183 27.3


User provided reference genes

Program Settings