Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 8.8e-69 263.5 130 100.0
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 1.2e-68 263.1 130 99.2
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.4e-66 256.1 129 97.7
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 5.9e-65 250.8 130 93.1
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 5.4e-58 227.6 130 80.8
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 1.2e-57 226.5 130 80.8
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.0e-57 225.7 130 80.0
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.0e-57 225.7 130 81.5
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.7e-57 225.3 130 80.8
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 4.5e-57 224.6 129 82.2
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.9e-57 224.2 130 80.8
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.9e-57 224.2 130 80.8
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.9e-57 224.2 130 80.8
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.3e-56 222.2 131 80.2
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 2.3e-56 222.2 133 81.2
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 6.6e-56 220.7 132 80.3
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 6.6e-56 220.7 130 80.8
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 1.1e-55 219.9 134 78.4
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 1.5e-55 219.5 131 80.9
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 1.5e-55 219.5 131 80.2
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 1.5e-55 219.5 131 80.2
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 1.5e-55 219.5 131 80.2
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 1.5e-55 219.5 130 80.8
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 1.9e-55 219.2 130 80.8
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 1.9e-55 219.2 130 77.7
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 3.3e-55 218.4 130 80.0
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 5.5e-55 217.6 130 79.2
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 5.5e-55 217.6 130 78.5
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 7.2e-55 217.2 131 79.4
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 7.2e-55 217.2 134 79.1
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.2e-54 216.5 131 79.4
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 1.2e-54 216.5 130 79.2
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 1.2e-54 216.5 132 77.3
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 1.2e-54 216.5 131 75.6
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 1.6e-54 216.1 130 77.7
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 1.6e-54 216.1 130 77.7
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 2.1e-54 215.7 130 81.5
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 4.7e-54 214.5 133 78.2
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 4.7e-54 214.5 133 78.9
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 6.1e-54 214.2 129 80.6
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 8.0e-54 213.8 131 78.6
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 8.0e-54 213.8 130 80.0
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 1.0e-53 213.4 131 80.2
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.0e-53 213.4 131 80.2
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.8e-53 212.6 130 80.0
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 1.8e-53 212.6 130 79.2
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 1.8e-53 212.6 130 80.0
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 2.3e-53 212.2 130 77.7
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.3e-53 212.2 131 79.4
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 2.3e-53 212.2 130 78.5
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 3.0e-53 211.8 130 80.0
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 3.0e-53 211.8 130 77.7
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 4.0e-53 211.5 131 74.8
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 4.0e-53 211.5 131 78.6
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 5.2e-53 211.1 130 78.5
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 5.2e-53 211.1 131 75.6
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 5.2e-53 211.1 130 77.7
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 5.2e-53 211.1 130 77.7
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 8.9e-53 210.3 130 78.5
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 8.9e-53 210.3 132 77.3
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 1.2e-52 209.9 132 78.0
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 1.2e-52 209.9 130 78.5
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 1.2e-52 209.9 130 77.7
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 2.0e-52 209.1 130 76.2
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 2.6e-52 208.8 132 76.5
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 3.4e-52 208.4 130 76.9
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 3.4e-52 208.4 130 76.2
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.4e-52 208.0 130 77.7
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 4.4e-52 208.0 134 72.4
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 4.4e-52 208.0 130 76.9
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 5.7e-52 207.6 130 76.9
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 5.7e-52 207.6 130 78.5
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 5.7e-52 207.6 130 76.9
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 9.8e-52 206.8 130 74.6
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 1.7e-51 206.1 130 74.6
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 2.2e-51 205.7 130 72.3
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 2.2e-51 205.7 130 74.6
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 4.9e-51 204.5 132 74.2
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 4.9e-51 204.5 130 71.5
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 4.9e-51 204.5 130 75.4
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 6.3e-51 204.1 130 76.2
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 6.3e-51 204.1 130 76.9
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 1.4e-50 203.0 130 74.6
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 1.4e-50 203.0 130 73.1
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 2.4e-50 202.2 130 72.3
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 5.4e-50 201.1 130 76.2
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 7.0e-50 200.7 130 72.3
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 7.0e-50 200.7 130 71.5
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 7.0e-50 200.7 134 72.4
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 9.2e-50 200.3 130 75.4
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 9.2e-50 200.3 130 73.1
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 1.2e-49 199.9 114 80.7
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.7e-49 198.7 130 73.8
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 3.5e-49 198.4 130 73.1
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 3.5e-49 198.4 122 78.7
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 3.5e-49 198.4 132 73.5
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 4.5e-49 198.0 132 73.5
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 4.5e-49 198.0 133 71.4
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 5.9e-49 197.6 118 78.0
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 7.8e-49 197.2 145 69.0
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 1.0e-48 196.8 130 70.8
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 1.3e-48 196.4 127 74.8
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 1.3e-48 196.4 130 70.8
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 1.7e-48 196.1 130 70.8
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 2.3e-48 195.7 134 72.4
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 2.3e-48 195.7 130 72.3
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 2.9e-48 195.3 134 72.4
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 3.9e-48 194.9 134 71.6
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 6.6e-48 194.1 138 72.5
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 6.6e-48 194.1 134 70.1
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 6.6e-48 194.1 136 71.3
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 8.6e-48 193.7 134 70.1
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 1.5e-47 193.0 134 69.4
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 1.5e-47 193.0 134 69.4
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 1.5e-47 193.0 134 69.4
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.9e-47 192.6 133 70.7
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 2.5e-47 192.2 130 69.2
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 3.3e-47 191.8 133 68.4
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 3.3e-47 191.8 134 69.4
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 3.3e-47 191.8 133 69.2
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 4.3e-47 191.4 134 70.1
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 4.3e-47 191.4 134 69.4
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 4.3e-47 191.4 134 69.4
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 5.6e-47 191.0 134 69.4
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 5.6e-47 191.0 134 69.4
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 2.8e-46 188.7 134 70.1
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 3.6e-46 188.3 131 68.7
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 3.6e-46 188.3 126 72.2
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 4.7e-46 188.0 117 76.9
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 4.7e-46 188.0 126 72.2
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 6.1e-46 187.6 130 66.2
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.4e-45 186.4 119 73.1
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.3e-45 185.7 132 66.7
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 3.1e-45 185.3 112 75.0
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 6.8e-45 184.1 120 70.8
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 9.8e-44 180.3 125 69.6
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 4.9e-43 177.9 127 69.3
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 6.4e-43 177.6 118 66.1
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 1.1e-42 176.8 122 69.7
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 1.9e-42 176.0 122 69.7
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 1.6e-41 172.9 130 60.8
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 6.0e-41 171.0 126 62.7
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 5.0e-40 167.9 130 62.3
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 1.5e-39 166.4 130 58.5
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 1.5e-39 166.4 118 66.1
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 3.3e-39 165.2 139 60.4
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 8.0e-38 160.6 115 67.8
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 3.7e-35 151.8 91 75.8
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 1.1e-34 150.2 131 57.3
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.5e-31 139.8 116 56.9
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 1.2e-28 130.2 78 76.9
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 1.5e-28 129.8 77 77.9
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 4.1e-26 121.7 85 72.9
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 1.3e-24 116.7 79 69.6
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 3.3e-23 112.1 75 72.0
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 5.2e-21 104.8 75 64.0
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 6.8e-21 104.4 77 64.9
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 2.0e-20 102.8 76 59.2
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 1.7e-19 99.8 56 83.9
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 4.9e-19 98.2 60 80.0
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 4.4e-12 75.1 50 68.0
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 6.4e-11 71.2 95 34.7
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 8.4e-11 70.9 62 54.8
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 4.8e-06 55.1 42 61.9


User provided reference genes

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