Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 5.3e-162 574.3 294 100.0
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 1.3e-131 473.4 294 85.4
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 3.3e-103 379.0 289 71.6
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 1.7e-83 313.5 279 62.0
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 1.7e-83 313.5 284 61.6
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 4.9e-83 312.0 288 61.1
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 2.5e-79 299.7 288 59.0
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 2.8e-78 296.2 281 56.9
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 2.8e-78 296.2 297 58.9
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 8.1e-78 294.7 283 59.4
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 1.2e-76 290.8 239 63.6
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 1.2e-76 290.8 288 57.3
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 1.5e-76 290.4 292 56.2
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 1.5e-76 290.4 242 61.6
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 3.4e-76 289.3 239 64.0
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 5.8e-76 288.5 297 56.6
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 1.3e-75 287.3 279 59.1
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 2.2e-75 286.6 243 62.6
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 3.8e-75 285.8 242 60.7
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 4.9e-75 285.4 242 60.7
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 2.4e-74 283.1 291 56.4
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 2.4e-74 283.1 291 56.4
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 3.2e-74 282.7 242 60.3
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 9.2e-74 281.2 292 57.2
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 2.7e-73 279.6 277 57.4
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 3.5e-73 279.3 242 59.5
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 1.7e-72 276.9 287 53.0
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 1.5e-71 273.9 286 55.6
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 1.9e-71 273.5 289 56.1
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 2.5e-71 273.1 286 53.5
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 4.3e-71 272.3 289 54.7
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 4.3e-71 272.3 287 54.7
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 5.6e-71 271.9 291 55.3
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 1.6e-70 270.4 234 62.4
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 2.1e-70 270.0 292 56.5
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 2.1e-70 270.0 265 58.1
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 3.6e-70 269.2 288 52.1
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 6.2e-70 268.5 292 54.1
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 2.4e-69 266.5 281 54.8
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 3.1e-69 266.2 243 60.1
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 4.0e-69 265.8 281 53.7
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 6.9e-69 265.0 249 59.8
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 2.6e-68 263.1 236 58.9
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 2.6e-68 263.1 292 53.4
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 5.8e-68 261.9 351 47.0
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 7.6e-68 261.5 292 53.1
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 7.6e-68 261.5 292 52.7
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 2.2e-67 260.0 280 54.3
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 2.9e-67 259.6 303 51.8
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 8.4e-67 258.1 279 55.6
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 8.4e-67 258.1 279 55.6
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 8.4e-67 258.1 276 55.8
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 4.2e-66 255.8 276 52.9
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 1.6e-65 253.8 290 51.0
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 1.6e-65 253.8 276 54.0
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 3.5e-65 252.7 279 53.0
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 6.0e-65 251.9 290 50.0
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 6.0e-65 251.9 290 53.4
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 7.8e-65 251.5 288 51.4
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 1.0e-64 251.1 279 52.0
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 6.6e-64 248.4 293 51.9
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 8.7e-64 248.1 220 61.8
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 1.1e-63 247.7 241 57.3
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 1.9e-63 246.9 239 59.4
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 5.6e-63 245.4 288 50.0
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 1.6e-62 243.8 232 58.6
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 3.6e-62 242.7 276 49.6
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 4.8e-62 242.3 232 60.3
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 6.2e-62 241.9 280 51.4
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 8.1e-62 241.5 276 49.6
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 8.1e-62 241.5 275 53.8
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 8.1e-62 241.5 282 52.1
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 1.1e-61 241.1 230 56.5
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 6.9e-61 238.4 284 51.1
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 2.6e-60 236.5 277 54.2
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 9.9e-60 234.6 247 55.5
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 1.3e-59 234.2 215 58.6
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 1.7e-59 233.8 178 73.0
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 3.2e-58 229.6 276 50.7
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 7.1e-58 228.4 293 48.8
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 4.6e-57 225.7 311 47.6
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 6.7e-56 221.9 237 54.0
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 1.9e-55 220.3 235 53.2
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 2.8e-54 216.5 266 49.6
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 2.8e-54 216.5 247 53.0
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 2.4e-53 213.4 231 56.7
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 4.0e-53 212.6 282 47.5
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 2.7e-49 199.9 277 45.1
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 8.7e-48 194.9 248 48.4
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 8.7e-48 194.9 260 48.8
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 2.5e-47 193.4 291 44.0
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 5.6e-47 192.2 227 52.0
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 9.0e-45 184.9 291 43.3
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 1.5e-44 184.1 283 44.2
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 2.6e-44 183.3 290 43.8
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 4.5e-44 182.6 283 44.9
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 1.0e-43 181.4 234 47.0
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 1.0e-43 181.4 290 43.4
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 1.3e-43 181.0 234 49.6
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 1.7e-43 180.6 234 49.6
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 4.9e-43 179.1 290 41.7
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 6.5e-43 178.7 267 41.9
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 1.1e-42 177.9 292 43.8
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 1.1e-42 177.9 292 43.8
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 4.6e-41 172.6 282 42.6
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 4.6e-41 172.6 244 44.7
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 1.0e-40 171.4 271 42.4
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 3.9e-40 169.5 271 41.3
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 5.1e-40 169.1 369 36.0
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 1.5e-39 167.5 173 55.5
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 3.3e-39 166.4 163 55.2
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 2.6e-36 156.8 125 64.8
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 4.5e-36 156.0 206 50.0
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 2.9e-35 153.3 105 77.1
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 2.8e-30 136.7 189 45.5
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 1.4e-29 134.4 169 47.3
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 1.8e-29 134.0 112 64.3
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 1.0e-24 118.2 169 43.8
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 3.3e-23 113.2 198 40.9
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 1.3e-22 111.3 126 50.8
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 3.7e-22 109.8 81 74.1
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 1.8e-21 107.5 78 74.4
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 1.2e-20 104.8 212 35.8
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 1.4e-18 97.8 245 35.9
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 1.6e-17 94.4 63 74.6
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 2.7e-17 93.6 230 33.5
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 2.3e-16 90.5 88 60.2
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 3.5e-12 76.6 71 57.7
TPR.G39004 Trifolium pratense HOM05D006629 ORTHO05D008430 4.5e-12 76.3 99 47.5
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 1.3e-11 74.7 64 67.2
SHI19145 Sapria himalayana HOM05D000002 ORTHO05D000001 6.1e-09 65.9 110 40.9
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 8.0e-09 65.5 80 46.2
CARHR102160 Cardamine hirsuta HOM05D005913 ORTHO05D007138 3.7e-06 56.6 59 54.2


User provided reference genes

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