Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025822.2 Cucumis melo HOM05D000448 ORTHO05D000291 3.1e-99 365.5 243 100.0
CsaV3_3G043600 Cucumis sativus L. HOM05D000448 ORTHO05D000291 8.2e-44 181.4 238 56.3
ClCG07G013960 Citrullus lanatus HOM05D000448 ORTHO05D000291 1.2e-39 167.5 237 62.0
Sed0015187 Sechium edule HOM05D000448 ORTHO05D000291 2.3e-38 163.3 231 63.2
CsaV3_2G016990 Cucumis sativus L. HOM05D000448 ORTHO05D000291 5.9e-34 148.7 215 43.3
MELO3C013066.2 Cucumis melo HOM05D000448 ORTHO05D000291 1.0e-33 147.9 217 42.9
MELO3C025837.2 Cucumis melo HOM05D000448 ORTHO05D000291 4.0e-22 109.4 200 39.0
Cfa018491 Carpinus fangiana HOM05D000448 ORTHO05D000291 1.1e-19 101.3 205 55.6
Cfa019709 Carpinus fangiana HOM05D000448 ORTHO05D000291 3.3e-16 89.7 205 55.6
CsaV3_3G043630 Cucumis sativus L. HOM05D000448 ORTHO05D000291 5.6e-16 89.0 233 49.4
Sed0014154 Sechium edule HOM05D000448 ORTHO05D000291 7.3e-16 88.6 215 53.5
MELO3C025825.2 Cucumis melo HOM05D000448 ORTHO05D000291 9.5e-16 88.2 92 47.8
Haze_18775 Corylus avellana HOM05D000448 ORTHO05D000291 2.1e-15 87.0 198 54.5
Haze_18770 Corylus avellana HOM05D000448 ORTHO05D000291 2.8e-15 86.7 191 56.5
Haze_18731 Corylus avellana HOM05D000448 ORTHO05D000291 1.4e-14 84.3 201 53.7
CiPaw.04G072700 Carya illinoinensis HOM05D000448 ORTHO05D000291 2.3e-14 83.6 203 52.2
Haze_18758 Corylus avellana HOM05D000448 ORTHO05D000291 2.3e-14 83.6 201 54.7
Hund18695 Selenicereus undatus HOM05D000448 ORTHO05D000291 6.8e-14 82.0 209 48.8
CiPaw.03G112300 Carya illinoinensis HOM05D000448 ORTHO05D000291 1.2e-13 81.3 205 53.7
arahy.Tifrunner.gnm1.ann1.27XKAM Arachis hypogaea HOM05D000448 ORTHO05D000291 5.8e-13 79.0 219 49.3
CSS0038637 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 5.8e-13 79.0 216 50.9
CANSAT56G0856 Cannabis sativa HOM05D000448 ORTHO05D000291 7.5e-13 78.6 206 51.5
Glyma.13G202000 Glycine max HOM05D000448 ORTHO05D000291 7.5e-13 78.6 152 46.7
Ciclev10027103m.g Citrus clementina HOM05D000448 ORTHO05D000291 1.3e-12 77.8 205 37.1
RcHm_v2.0_Chr1g0341001 Rosa chinensis HOM05D000448 ORTHO05D000291 1.7e-12 77.4 207 49.3
CiPaw.03G112000 Carya illinoinensis HOM05D000448 ORTHO05D000291 2.2e-12 77.0 205 53.2
CSS0043523 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 2.9e-12 76.6 211 50.7
QL05p009005 Quercus lobata HOM05D000448 ORTHO05D000291 2.9e-12 76.6 223 48.4
CSS0035404 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 6.4e-12 75.5 217 49.8
MELO3C025814.2 Cucumis melo HOM05D000448 ORTHO05D000291 6.4e-12 75.5 74 50.0
TPR.G7562 Trifolium pratense HOM05D000448 ORTHO05D000291 6.4e-12 75.5 218 50.5
RcHm_v2.0_Chr1g0342341 Rosa chinensis HOM05D000448 ORTHO05D000291 1.4e-11 74.3 195 29.2
VMungo1127G0734 Vigna mungo HOM05D000448 ORTHO05D000291 1.9e-11 73.9 194 55.2
Cfa007125 Carpinus fangiana HOM05D000448 ORTHO05D000291 2.4e-11 73.6 216 49.1
Cfa019724 Carpinus fangiana HOM05D000448 ORTHO05D000291 3.2e-11 73.2 183 55.7
PSO170G3744 Papaver somniferum HOM05D000448 ORTHO05D000291 3.2e-11 73.2 206 24.3
PGR083G2444 Punica granatum HOM05D000448 ORTHO05D000291 4.1e-11 72.8 225 46.2
arahy.Tifrunner.gnm1.ann1.9J7SPP Arachis hypogaea HOM05D000448 ORTHO05D000291 5.4e-11 72.4 219 48.4
RcHm_v2.0_Chr3g0490431 Rosa chinensis HOM05D000448 ORTHO05D000291 5.4e-11 72.4 207 50.2
CiPaw.03G110600 Carya illinoinensis HOM05D000448 ORTHO05D000291 7.0e-11 72.0 205 52.2
vmacro17436 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 7.0e-11 72.0 238 27.3
Cfa019118 Carpinus fangiana HOM05D000448 ORTHO05D000291 9.2e-11 71.6 205 50.2
FvH4_7g06240 Fragaria vesca HOM05D000448 ORTHO05D000291 9.2e-11 71.6 200 52.0
Lj1g0011572 Lotus japonicus HOM05D000448 ORTHO05D000291 9.2e-11 71.6 189 53.4
Haze_18779 Corylus avellana HOM05D000448 ORTHO05D000291 1.2e-10 71.2 195 44.6
PSO384G2515 Papaver somniferum HOM05D000448 ORTHO05D000291 1.2e-10 71.2 217 47.5
PSO781G0012 Papaver somniferum HOM05D000448 ORTHO05D000291 2.0e-10 70.5 211 47.4
AUR62001506 Chenopodium quinoa HOM05D000448 ORTHO05D000291 2.7e-10 70.1 207 46.4
Glyma.03G170400 Glycine max HOM05D000448 ORTHO05D000291 2.7e-10 70.1 206 51.0
Medtr7g099570 Medicago truncatula HOM05D000448 ORTHO05D000291 2.7e-10 70.1 205 51.2
Sc09g0010080 Simmondsia chinensis HOM05D000448 ORTHO05D000291 2.7e-10 70.1 201 49.3
arahy.Tifrunner.gnm1.ann1.FECP0X Arachis hypogaea HOM05D000448 ORTHO05D000291 3.5e-10 69.7 189 40.7
CSS0023638 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 4.6e-10 69.3 204 28.4
Cfa019716 Carpinus fangiana HOM05D000448 ORTHO05D000291 6.0e-10 68.9 152 31.6
Lj4P433T6 Lonicera japonica HOM05D000448 ORTHO05D000291 7.8e-10 68.6 200 53.0
EL10Ac7g16388 Beta vulgaris HOM05D000448 ORTHO05D000291 1.0e-09 68.2 209 43.5
Sc09g0010010 Simmondsia chinensis HOM05D000448 ORTHO05D000291 1.3e-09 67.8 204 39.2
Sc06g0006700 Simmondsia chinensis HOM05D000448 ORTHO05D000291 1.7e-09 67.4 214 44.4
Sc09g0010050 Simmondsia chinensis HOM05D000448 ORTHO05D000291 2.3e-09 67.0 201 47.3
Ah.08g216580 Amaranthus hybridus HOM05D000448 ORTHO05D000291 3.0e-09 66.6 207 44.0
COL.COLO4_30724 Corchorus olitorius HOM05D000448 ORTHO05D000291 3.0e-09 66.6 185 54.6
Cfa013308 Carpinus fangiana HOM05D000448 ORTHO05D000291 3.9e-09 66.2 83 44.6
CANSAT56G2866 Cannabis sativa HOM05D000448 ORTHO05D000291 5.0e-09 65.9 184 50.5
Eucgr.E02801 Eucalyptus grandis HOM05D000448 ORTHO05D000291 5.0e-09 65.9 211 49.3
Lj4P439T8 Lonicera japonica HOM05D000448 ORTHO05D000291 5.0e-09 65.9 201 46.3
VMungo1383G3639 Vigna mungo HOM05D000448 ORTHO05D000291 5.0e-09 65.9 211 50.2
Lj4A450T12 Lonicera japonica HOM05D000448 ORTHO05D000291 6.6e-09 65.5 217 43.8
Rhsim03G0060400 Rhododendron simsii HOM05D000448 ORTHO05D000291 6.6e-09 65.5 85 41.2
Rhsim03G0060700 Rhododendron simsii HOM05D000448 ORTHO05D000291 6.6e-09 65.5 85 41.2
RhsimUnG0057600 Rhododendron simsii HOM05D000448 ORTHO05D000291 6.6e-09 65.5 85 41.2
CANSAT25G3158 Cannabis sativa HOM05D000448 ORTHO05D000291 8.6e-09 65.1 183 32.8
Phvul.007G156400 Phaseolus vulgaris HOM05D000448 ORTHO05D000291 8.6e-09 65.1 211 49.8
Sc06g0006680 Simmondsia chinensis HOM05D000448 ORTHO05D000291 8.6e-09 65.1 194 47.9
TPR.G7565 Trifolium pratense HOM05D000448 ORTHO05D000291 8.6e-09 65.1 206 50.5
Eucgr.C03399 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.1e-08 64.7 191 30.4
EL10Ac7g16389 Beta vulgaris HOM05D000448 ORTHO05D000291 1.5e-08 64.3 208 41.3
Eucgr.L00448 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.5e-08 64.3 201 38.8
Rhsim02G0103800 Rhododendron simsii HOM05D000448 ORTHO05D000291 1.5e-08 64.3 85 41.2
FAN06G0545 Fragaria x ananassa HOM05D000448 ORTHO05D000291 1.9e-08 63.9 172 54.7
Lj4P430T2 Lonicera japonica HOM05D000448 ORTHO05D000291 1.9e-08 63.9 200 51.5
Sc09g0010030 Simmondsia chinensis HOM05D000448 ORTHO05D000291 1.9e-08 63.9 201 48.3
Ah.16g105930 Amaranthus hybridus HOM05D000448 ORTHO05D000291 2.5e-08 63.5 209 35.4
CANSAT25G2827 Cannabis sativa HOM05D000448 ORTHO05D000291 2.5e-08 63.5 192 40.1
Ciclev10003826m.g Citrus clementina HOM05D000448 ORTHO05D000291 3.3e-08 63.2 199 36.2
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 3.3e-08 63.2 218 47.7
VMungo1383G2601 Vigna mungo HOM05D000448 ORTHO05D000291 3.3e-08 63.2 206 50.0
Lsat_1_v5_gn_5_78720 Lactuca sativa HOM05D000448 ORTHO05D000291 4.3e-08 62.8 199 50.8
PSO302G0297 Papaver somniferum HOM05D000448 ORTHO05D000291 4.3e-08 62.8 206 23.8
CANSAT56G0201 Cannabis sativa HOM05D000448 ORTHO05D000291 5.6e-08 62.4 182 52.2
CAN.G756.43 Capsicum annuum HOM05D000480 ORTHO05D000313 5.6e-08 62.4 203 26.1
Lsat_1_v5_gn_5_29501 Lactuca sativa HOM05D000448 ORTHO05D000291 5.6e-08 62.4 199 36.2
vmacro20893 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 5.6e-08 62.4 224 42.9
AUR62009255 Chenopodium quinoa HOM05D000448 ORTHO05D000291 9.5e-08 61.6 212 25.0
FAN10G1575 Fragaria x ananassa HOM05D000448 ORTHO05D000291 9.5e-08 61.6 202 50.0
COL.COLO4_30786 Corchorus olitorius HOM05D000448 ORTHO05D000291 1.2e-07 61.2 181 54.7
ECA234G0709 Erigeron canadensis HOM05D000448 ORTHO05D000291 1.2e-07 61.2 206 47.6
HanXRQChr12g0358831 Helianthus annuus HOM05D000448 ORTHO05D000291 1.2e-07 61.2 222 45.9
Lsat_1_v5_gn_5_29481 Lactuca sativa HOM05D000448 ORTHO05D000291 1.2e-07 61.2 199 27.6
PGR044G2433 Punica granatum HOM05D000448 ORTHO05D000291 1.2e-07 61.2 201 48.3
PGR142G0312 Punica granatum HOM05D000448 ORTHO05D000291 1.2e-07 61.2 201 39.3
CiPaw.03G111600 Carya illinoinensis HOM05D000448 ORTHO05D000291 1.6e-07 60.8 205 50.2
Haze_18777 Corylus avellana HOM05D000448 ORTHO05D000291 1.6e-07 60.8 189 41.8
RhsimUnG0057700 Rhododendron simsii HOM05D000448 ORTHO05D000291 1.6e-07 60.8 85 41.2
AUR62008891 Chenopodium quinoa HOM05D000448 ORTHO05D000291 2.1e-07 60.5 202 29.2
Lj4C904T0 Lonicera japonica HOM05D000448 ORTHO05D000291 2.1e-07 60.5 210 44.8
Lj4P448T6 Lonicera japonica HOM05D000448 ORTHO05D000291 2.1e-07 60.5 201 44.8
Rhsim03G0059800 Rhododendron simsii HOM05D000448 ORTHO05D000291 2.1e-07 60.5 81 39.5
AUR62043586 Chenopodium quinoa HOM05D000448 ORTHO05D000291 2.8e-07 60.1 200 41.0
AUR62043845 Chenopodium quinoa HOM05D000448 ORTHO05D000291 2.8e-07 60.1 159 27.7
AUR62043857 Chenopodium quinoa HOM05D000448 ORTHO05D000291 2.8e-07 60.1 200 41.0
ECA248G1701 Erigeron canadensis HOM05D000448 ORTHO05D000291 2.8e-07 60.1 214 30.8
HanXRQChr12g0358821 Helianthus annuus HOM05D000448 ORTHO05D000291 2.8e-07 60.1 199 50.3
Duzib192G1008 Durio zibethinus HOM05D000448 ORTHO05D000291 3.6e-07 59.7 181 56.4
FvH4_7g06250 Fragaria vesca HOM05D064977 ORTHO05D000291 3.6e-07 59.7 180 53.3
Lj4P447T2 Lonicera japonica HOM05D000448 ORTHO05D000291 3.6e-07 59.7 200 50.5
Rhsim03G0061300 Rhododendron simsii HOM05D000448 ORTHO05D000291 3.6e-07 59.7 81 39.5
HanXRQChr16g0523041 Helianthus annuus HOM05D000448 ORTHO05D000291 4.7e-07 59.3 201 32.3
Cpa.g.sc277.6 Carica papaya HOM05D000448 ORTHO05D000291 6.2e-07 58.9 211 33.2
AUR62009251 Chenopodium quinoa HOM05D000448 ORTHO05D000291 6.2e-07 58.9 200 31.0
Rhsim03G0061000 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.2e-07 58.9 85 42.4
CANSAT25G2897 Cannabis sativa HOM05D000448 ORTHO05D000291 8.0e-07 58.5 184 39.1
Haze_18751 Corylus avellana HOM05D000448 ORTHO05D000291 8.0e-07 58.5 133 44.4
Duzib235G1327 Durio zibethinus HOM05D000448 ORTHO05D000291 8.0e-07 58.5 199 33.7
Glyma.19G171500 Glycine max HOM05D000448 ORTHO05D000291 8.0e-07 58.5 197 49.7
Nn6g35572 Nelumbo nucifera HOM05D000448 ORTHO05D000291 8.0e-07 58.5 195 49.2
AUR62031816 Chenopodium quinoa HOM05D000448 ORTHO05D000291 1.1e-06 58.2 201 34.3
Haze_09282 Corylus avellana HOM05D000448 ORTHO05D000291 1.1e-06 58.2 163 36.2
Haze_18750 Corylus avellana HOM05D000448 ORTHO05D000291 1.1e-06 58.2 68 44.1
Lj4C437T1 Lonicera japonica HOM05D000448 ORTHO05D000291 1.1e-06 58.2 195 52.3
PGR044G0759 Punica granatum HOM05D000448 ORTHO05D000291 1.1e-06 58.2 223 44.4
SalBow4G1636 Salvia bowleyana HOM05D000448 ORTHO05D000291 1.1e-06 58.2 206 45.1
Hund18696 Selenicereus undatus HOM05D000448 ORTHO05D000291 1.1e-06 58.2 186 41.9
Haze_18768 Corylus avellana HOM05D000448 ORTHO05D000291 1.4e-06 57.8 133 45.1
Eucgr.C00683 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.4e-06 57.8 200 49.0
Eucgr.C03594 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.4e-06 57.8 193 38.3
Sed0000310 Sechium edule HOM05D000448 ORTHO05D000291 1.4e-06 57.8 201 47.3
Thecc.09G132900 Theobroma cacao HOM05D000448 ORTHO05D000291 1.4e-06 57.8 201 50.2
MSTRG.4939 Avicennia marina HOM05D000480 ORTHO05D000313 1.8e-06 57.4 205 47.8
CiPaw.03G111800 Carya illinoinensis HOM05D000448 ORTHO05D000291 1.8e-06 57.4 75 42.7
AUR62004918 Chenopodium quinoa HOM05D000448 ORTHO05D000291 1.8e-06 57.4 151 41.1
Hma1.2p1_2284F.1_g318890 Hydrangea macrophylla HOM05D000448 ORTHO05D000313 1.8e-06 57.4 71 45.1
PGR044G0504 Punica granatum HOM05D000448 ORTHO05D000291 1.8e-06 57.4 212 45.3
Duzib192G0934 Durio zibethinus HOM05D000448 ORTHO05D000291 2.3e-06 57.0 173 56.1
Lalb_Chr25g0289651 Lupinus albus HOM05D000448 ORTHO05D000291 2.3e-06 57.0 214 48.6
QL04p090951 Quercus lobata HOM05D000448 ORTHO05D000291 2.3e-06 57.0 80 40.0
MSTRG.13297 Avicennia marina HOM05D000480 ORTHO05D000313 3.1e-06 56.6 205 47.8
RhsimUnG0112900 Rhododendron simsii HOM05D003997 ORTHO05D002698 3.1e-06 56.6 85 37.6
SalBow4G3166 Salvia bowleyana HOM05D000448 ORTHO05D000291 3.1e-06 56.6 200 46.0
COL.COLO4_30806 Corchorus olitorius HOM05D000448 ORTHO05D000291 4.0e-06 56.2 86 34.9
QL05p008761 Quercus lobata HOM05D000448 ORTHO05D000291 4.0e-06 56.2 80 40.0
Rhsim03G0061100 Rhododendron simsii HOM05D000448 ORTHO05D000291 4.0e-06 56.2 85 35.3
Rhsim03G0061600 Rhododendron simsii HOM05D003997 ORTHO05D002698 4.0e-06 56.2 85 37.6
Sc10g0008820 Simmondsia chinensis HOM05D000448 ORTHO05D000291 4.0e-06 56.2 173 45.7
ECA234G0126 Erigeron canadensis HOM05D000448 ORTHO05D000291 5.2e-06 55.8 189 50.3
Eucgr.C00686 Eucalyptus grandis HOM05D000448 ORTHO05D000291 5.2e-06 55.8 179 52.5
Lj4A903G13 Lonicera japonica HOM05D000448 ORTHO05D000291 5.2e-06 55.8 211 44.1
MD12G1213300 Malus domestica HOM05D000448 ORTHO05D000291 5.2e-06 55.8 78 43.6
Rhsim12G0208300 Rhododendron simsii HOM05D001920 ORTHO05D004895 5.2e-06 55.8 83 37.3
SalBow1G4710 Salvia bowleyana HOM05D000448 ORTHO05D000291 5.2e-06 55.8 199 45.7
HanXRQChr02g0058091 Helianthus annuus HOM05D000448 ORTHO05D000291 6.8e-06 55.5 199 30.2
Lsat_1_v5_gn_5_30860 Lactuca sativa HOM05D000448 ORTHO05D000291 6.8e-06 55.5 201 34.8
Rhsim03G0060500 Rhododendron simsii HOM05D000448 ORTHO05D000291 6.8e-06 55.5 81 42.0
Rhsim03G0060800 Rhododendron simsii HOM05D000448 ORTHO05D000291 6.8e-06 55.5 81 42.0
AUR62009250 Chenopodium quinoa HOM05D000448 ORTHO05D000291 8.9e-06 55.1 77 37.7
Eucgr.B00705 Eucalyptus grandis HOM05D000448 ORTHO05D000291 8.9e-06 55.1 179 37.4
PGR044G1390 Punica granatum HOM05D000448 ORTHO05D000291 8.9e-06 55.1 201 49.3
Rhsim11G0060000 Rhododendron simsii HOM05D000448 ORTHO05D000291 8.9e-06 55.1 86 36.0
Thecc.09G133100 Theobroma cacao HOM05D000448 ORTHO05D000291 8.9e-06 55.1 201 49.3


User provided reference genes

Program Settings