Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 1.4e-170 602.8 303 100.0
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 1.6e-158 562.8 304 93.4
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 1.9e-138 496.1 310 82.6
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 2.4e-117 426.0 306 74.8
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 5.2e-56 222.2 270 47.8
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 1.9e-53 213.8 236 50.4
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 1.0e-51 208.0 234 48.7
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 9.6e-50 201.4 236 49.6
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 1.8e-48 197.2 256 46.1
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 2.0e-47 193.7 260 46.9
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 2.6e-47 193.4 290 42.8
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 3.4e-47 193.0 242 46.3
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 5.8e-47 192.2 243 48.1
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 7.6e-47 191.8 286 41.6
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 7.6e-47 191.8 304 41.4
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 1.3e-46 191.0 242 46.7
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 1.2e-44 184.5 276 44.2
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 3.5e-44 183.0 211 48.3
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 7.9e-44 181.8 299 39.8
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 1.8e-43 180.6 311 37.3
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 2.3e-43 180.3 276 42.0
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 3.9e-43 179.5 255 42.7
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 5.1e-43 179.1 284 43.3
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 8.7e-43 178.3 240 45.8
Haze_23892 Corylus avellana HOM05D008415 ORTHO05D010601 2.5e-42 176.8 244 45.5
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 1.3e-41 174.5 246 43.9
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 4.8e-41 172.6 232 45.3
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 8.1e-41 171.8 261 43.3
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 1.1e-40 171.4 264 43.6
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 1.8e-40 170.6 225 47.6
ECA238G2082 Erigeron canadensis HOM05D008415 ORTHO05D010601 5.3e-40 169.1 240 44.6
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 1.5e-39 167.5 251 43.0
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 1.5e-39 167.5 237 43.5
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 3.4e-39 166.4 240 45.0
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 5.8e-39 165.6 242 43.8
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 6.4e-38 162.2 238 39.9
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 9.3e-37 158.3 116 64.7
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.6e-36 157.5 116 64.7
HanXRQChr14g0445691 Helianthus annuus HOM05D008415 ORTHO05D010601 2.3e-35 153.7 283 39.2
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 2.3e-35 153.7 198 47.5
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 9.6e-34 148.3 188 46.8
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 4.0e-32 142.9 235 41.3
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 6.9e-32 142.1 120 52.5
CSS0005479 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 2.1e-28 130.6 200 42.5
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 3.9e-27 126.3 92 62.0
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 8.2e-25 118.6 277 33.2
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 3.1e-24 116.7 91 61.5
CiPaw.14G078500 Carya illinoinensis HOM05D008415 ORTHO05D010601 2.0e-23 114.0 103 57.3
Potri.016G129250 Populus trichocarpa HOM05D008415 ORTHO05D010601 3.4e-23 113.2 251 36.3
Cc07_g02980 Coffea canephora HOM05D008415 ORTHO05D010601 1.6e-20 104.4 81 59.3
Os03g0288900 Oryza sativa ssp. japonica HOM05D008415 ORTHO05D010601 9.7e-18 95.1 168 34.5
TPR.G15532 Trifolium pratense HOM05D008415 ORTHO05D010601 1.3e-17 94.7 138 39.9
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 7.7e-15 85.5 91 45.1
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 2.5e-13 80.5 137 31.4
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 9.4e-13 78.6 175 30.3
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.6e-12 77.8 109 35.8
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 2.1e-12 77.4 194 29.9
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.7e-12 77.0 171 34.5
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 7.9e-12 75.5 177 32.2
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.4e-11 74.7 148 30.4
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.8e-11 74.3 109 37.6
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 2.3e-11 73.9 169 29.6
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 2.3e-11 73.9 176 29.5
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 2.3e-11 73.9 176 29.0
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 2.3e-11 73.9 109 35.8
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 2.3e-11 73.9 205 29.3
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 3.0e-11 73.6 90 40.0
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 5.1e-11 72.8 109 33.9
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 8.8e-11 72.0 174 27.6
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 1.1e-10 71.6 176 28.4
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 1.5e-10 71.2 113 33.6
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 2.0e-10 70.9 173 29.5
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.0e-10 70.9 171 30.4
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.0e-10 70.9 109 35.8
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 2.6e-10 70.5 174 29.9
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 2.6e-10 70.5 168 29.2
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 2.6e-10 70.5 168 29.2
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.6e-10 70.5 152 31.6
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 2.6e-10 70.5 249 26.1
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 3.3e-10 70.1 253 26.1
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 3.3e-10 70.1 160 29.4
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 4.4e-10 69.7 112 36.6
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 4.4e-10 69.7 107 38.3
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 5.7e-10 69.3 90 38.9
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 7.4e-10 68.9 90 40.0
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 7.4e-10 68.9 110 37.3
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 7.4e-10 68.9 237 27.4
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 9.7e-10 68.6 157 30.6
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 9.7e-10 68.6 112 35.7
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 9.7e-10 68.6 171 26.3
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 9.7e-10 68.6 169 28.4
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 9.7e-10 68.6 109 35.8
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 1.3e-09 68.2 111 35.1
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 1.3e-09 68.2 259 25.9
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 1.3e-09 68.2 193 26.4
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 1.3e-09 68.2 166 29.5
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 1.3e-09 68.2 162 29.6
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 1.7e-09 67.8 177 28.2
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.7e-09 67.8 138 31.2
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 2.2e-09 67.4 277 23.8
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 2.2e-09 67.4 162 29.6
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 2.2e-09 67.4 161 28.6
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 2.2e-09 67.4 138 31.2
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 2.8e-09 67.0 91 38.5
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 2.8e-09 67.0 156 31.4
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 2.8e-09 67.0 160 27.5
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 3.7e-09 66.6 118 32.2
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 4.8e-09 66.2 179 27.9
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 4.8e-09 66.2 156 30.8
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 6.3e-09 65.9 104 32.7
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 6.3e-09 65.9 171 25.7
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 6.3e-09 65.9 204 27.9
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 6.3e-09 65.9 171 25.7
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 6.3e-09 65.9 166 28.9
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 6.3e-09 65.9 84 36.9
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 8.2e-09 65.5 173 30.1
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 8.2e-09 65.5 167 25.7
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 8.2e-09 65.5 152 30.3
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 8.2e-09 65.5 173 30.1
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 8.2e-09 65.5 177 27.1
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 1.1e-08 65.1 160 29.4
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.1e-08 65.1 160 29.4
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 1.1e-08 65.1 89 37.1
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 1.1e-08 65.1 182 29.1
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.1e-08 65.1 250 28.0
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 1.1e-08 65.1 137 31.4
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 1.4e-08 64.7 89 36.0
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 1.4e-08 64.7 243 26.3
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 1.8e-08 64.3 243 24.3
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 1.8e-08 64.3 96 34.4
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.8e-08 64.3 160 30.0
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.4e-08 63.9 158 29.7
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 2.4e-08 63.9 88 37.5
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 3.1e-08 63.5 139 30.2
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 3.1e-08 63.5 196 27.0
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 3.1e-08 63.5 57 47.4
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 3.1e-08 63.5 183 25.1
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 4.1e-08 63.2 77 36.4
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 4.1e-08 63.2 153 28.1
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 4.1e-08 63.2 156 27.6
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 4.1e-08 63.2 170 28.8
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 4.1e-08 63.2 153 28.8
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 5.3e-08 62.8 283 25.4
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 7.0e-08 62.4 109 29.4
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 7.0e-08 62.4 142 31.0
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 7.0e-08 62.4 78 39.7
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 9.1e-08 62.0 240 27.1
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 9.1e-08 62.0 177 28.2
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 1.2e-07 61.6 118 31.4
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.5e-07 61.2 242 24.8
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 1.5e-07 61.2 154 27.9
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 1.5e-07 61.2 127 29.9
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 1.5e-07 61.2 98 36.7
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 2.0e-07 60.8 128 28.9
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 2.0e-07 60.8 84 35.7
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 2.0e-07 60.8 137 29.9
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 2.0e-07 60.8 141 29.1
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.6e-07 60.5 160 30.0
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 3.4e-07 60.1 178 27.0
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 4.5e-07 59.7 78 34.6
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 5.9e-07 59.3 146 27.4
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 5.9e-07 59.3 177 26.6
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 5.9e-07 59.3 59 44.1
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 7.7e-07 58.9 169 28.4
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 1.0e-06 58.5 146 28.1
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 1.0e-06 58.5 184 27.2
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 1.3e-06 58.2 152 28.3
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 1.3e-06 58.2 124 32.3
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 1.3e-06 58.2 157 26.8
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 1.3e-06 58.2 157 26.8
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 1.3e-06 58.2 157 26.8
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 1.3e-06 58.2 88 35.2
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 1.7e-06 57.8 203 27.1
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 2.2e-06 57.4 81 35.8
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 6.5e-06 55.8 107 28.0
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 6.5e-06 55.8 169 29.0
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 6.5e-06 55.8 107 29.9
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 8.5e-06 55.5 175 25.7


User provided reference genes

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