Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 3.6e-222 774.6 394 100.0
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 4.1e-194 681.4 394 89.3
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 2.7e-193 678.7 401 87.5
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.4e-146 523.5 382 74.1
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 4.3e-119 432.2 395 58.7
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 1.3e-118 430.6 395 58.7
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 4.1e-117 425.6 397 59.9
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 6.9e-117 424.9 380 59.5
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 7.7e-116 421.4 394 58.4
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 3.8e-115 419.1 399 59.1
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 9.4e-114 414.5 375 59.2
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 9.4e-114 414.5 390 58.2
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 2.1e-113 413.3 374 60.2
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 3.6e-113 412.5 373 59.2
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 4.7e-113 412.1 374 58.8
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.0e-112 411.0 396 56.6
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 1.8e-112 410.2 386 56.0
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.8e-112 410.2 379 58.8
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 8.8e-112 407.9 411 54.7
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 2.8e-110 402.9 384 56.8
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 3.7e-110 402.5 384 55.2
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 6.3e-110 401.7 392 55.6
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 8.2e-110 401.4 378 55.8
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 4.1e-109 399.1 389 54.2
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 9.1e-109 397.9 386 58.5
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 2.0e-108 396.7 384 54.7
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 3.4e-108 396.0 386 57.0
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 4.5e-108 395.6 377 56.5
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.2e-107 393.3 372 60.5
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 2.9e-107 392.9 413 54.2
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 9.4e-106 387.9 380 53.7
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 1.2e-105 387.5 404 53.7
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 1.6e-105 387.1 379 55.7
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 2.1e-105 386.7 366 56.6
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.0e-104 384.4 373 56.6
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 1.4e-104 384.0 372 56.7
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 5.2e-104 382.1 377 54.1
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 1.5e-103 380.6 379 55.7
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 2.0e-103 380.2 380 54.2
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 4.4e-103 379.0 395 53.2
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 4.4e-103 379.0 386 54.7
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 9.7e-103 377.9 379 55.9
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 1.1e-101 374.4 383 53.5
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 4.5e-100 369.0 384 53.1
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 5.9e-100 368.6 374 54.3
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 1.3e-99 367.5 389 54.0
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 5.0e-99 365.5 373 55.8
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 1.1e-98 364.4 381 50.9
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 2.5e-98 363.2 404 49.3
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 3.2e-98 362.8 367 55.9
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 3.2e-98 362.8 377 54.1
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 5.5e-98 362.1 404 50.7
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 9.4e-98 361.3 403 50.6
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 2.1e-97 360.1 404 52.0
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 1.0e-96 357.8 296 59.1
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 1.4e-96 357.5 384 52.3
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 2.3e-96 356.7 350 56.9
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 1.2e-95 354.4 367 55.3
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 1.5e-95 354.0 369 54.2
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 1.5e-95 354.0 405 49.6
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 5.7e-95 352.1 393 52.4
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 5.7e-95 352.1 373 53.6
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 3.7e-94 349.4 360 51.9
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 3.7e-94 349.4 373 54.2
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 6.3e-94 348.6 350 54.9
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 1.1e-93 347.8 377 51.7
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 3.1e-93 346.3 378 51.6
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 3.1e-93 346.3 399 50.6
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 9.1e-93 344.7 381 50.9
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 1.6e-92 344.0 378 49.7
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 1.6e-92 344.0 373 52.8
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.3e-91 340.9 406 46.6
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 2.2e-91 340.1 379 51.2
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 6.5e-91 338.6 376 48.9
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.1e-90 337.8 398 49.5
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 1.1e-90 337.8 398 48.0
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 5.5e-90 335.5 379 50.7
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 6.1e-89 332.0 376 49.2
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 6.1e-89 332.0 310 61.9
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 8.0e-89 331.6 378 49.5
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 8.0e-89 331.6 378 48.9
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 1.2e-87 327.8 389 50.6
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.5e-87 327.4 346 52.3
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 7.5e-87 325.1 348 54.3
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 1.7e-86 323.9 396 46.5
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 4.8e-86 322.4 365 50.4
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 3.1e-85 319.7 260 62.3
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 1.6e-84 317.4 375 46.9
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 2.7e-84 316.6 398 46.2
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 4.5e-84 315.8 371 47.2
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 1.6e-81 307.4 402 47.0
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 2.8e-81 306.6 260 61.2
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 1.8e-80 303.9 458 41.7
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.5e-79 300.8 307 56.4
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 2.0e-79 300.4 353 45.6
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 3.4e-79 299.7 376 47.6
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 3.4e-79 299.7 392 44.4
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 4.4e-79 299.3 391 44.8
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 9.8e-79 298.1 374 48.4
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 1.0e-75 288.1 364 46.4
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 2.9e-75 286.6 386 43.5
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 1.1e-74 284.6 288 52.4
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 3.3e-74 283.1 233 59.2
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 8.9e-72 275.0 307 46.9
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 1.5e-71 274.2 294 48.0
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 5.8e-71 272.3 352 43.5
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 2.9e-70 270.0 258 53.1
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 1.6e-68 264.2 370 46.2
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 2.3e-67 260.4 391 40.4
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 2.3e-67 260.4 369 42.0
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 7.3e-66 255.4 303 45.5
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 2.3e-64 250.4 275 46.9
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 2.9e-62 243.4 347 42.1
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 7.8e-60 235.3 283 51.6
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.7e-59 234.2 360 40.6
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 8.6e-59 231.9 282 43.3
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 2.2e-54 217.2 190 56.3
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 5.4e-53 212.6 238 54.2
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 7.8e-52 208.8 182 57.1
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 4.7e-49 199.5 179 52.5
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.7e-44 183.7 180 49.4
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 1.9e-42 177.6 213 52.6
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 2.2e-38 164.1 240 46.7
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 5.4e-37 159.5 135 57.0
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 5.1e-35 152.9 226 39.4
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 1.4e-29 134.8 110 60.0
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 3.9e-27 126.7 90 60.0
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 8.7e-27 125.6 93 58.1
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 2.1e-25 120.9 91 59.3
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 3.8e-22 110.2 151 51.0
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 5.5e-21 106.3 113 45.1
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 1.2e-20 105.1 138 49.3
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 6.7e-19 99.4 108 44.4
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.5e-18 98.2 108 46.3
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 3.3e-18 97.1 102 47.1
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.3e-17 95.1 102 45.1
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 1.6e-17 94.7 76 60.5
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 6.2e-17 92.8 89 51.7
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 1.0e-14 85.5 86 41.9
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 1.7e-06 58.2 132 39.4
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 5.0e-06 56.6 139 39.6


User provided reference genes

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